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Items: 31

1.

Centromeric retrotransposons and centromere function.

Presting GG.

Curr Opin Genet Dev. 2018 Apr;49:79-84. doi: 10.1016/j.gde.2018.03.004. Epub 2018 Mar 27. Review.

PMID:
29597064
2.

Improved maize reference genome with single-molecule technologies.

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Presting GG, McMullen M, Ross-Ibarra J, Dawe RK, Hastie A, Rank DR, Ware D.

Nature. 2017 Jun 22;546(7659):524-527. doi: 10.1038/nature22971. Epub 2017 Jun 12.

PMID:
28605751
3.

High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events.

Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG.

Front Plant Sci. 2016 Mar 23;7:308. doi: 10.3389/fpls.2016.00308. eCollection 2016.

4.

Inbreeding drives maize centromere evolution.

Schneider KL, Xie Z, Wolfgruber TK, Presting GG.

Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):E987-96. doi: 10.1073/pnas.1522008113. Epub 2016 Feb 8.

5.

The Hawaiian freshwater algae biodiversity survey (2009-2014): systematic and biogeographic trends with an emphasis on the macroalgae.

Sherwood AR, Carlile AL, Neumann JM, Kociolek JP, Johansen JR, Lowe RL, Conklin KY, Presting GG.

BMC Ecol. 2014 Oct 25;14:28. doi: 10.1186/s12898-014-0028-2.

6.

Evolution of centromeric retrotransposons in grasses.

Sharma A, Presting GG.

Genome Biol Evol. 2014 May 9;6(6):1335-52. doi: 10.1093/gbe/evu096.

7.

Tandem repeats derived from centromeric retrotransposons.

Sharma A, Wolfgruber TK, Presting GG.

BMC Genomics. 2013 Mar 4;14:142. doi: 10.1186/1471-2164-14-142.

8.

The Hawaiian Freshwater Algal Database (HfwADB): a laboratory LIMS and online biodiversity resource.

Sherwood AR, Wang N, Carlile AL, Neumann JM, Wolfgruber TK, Presting GG.

BMC Ecol. 2012 Oct 25;12:22. doi: 10.1186/1472-6785-12-22.

9.

Retrotransposon insertion targeting: a mechanism for homogenization of centromere sequences on nonhomologous chromosomes.

Birchler JA, Presting GG.

Genes Dev. 2012 Apr 1;26(7):638-40. doi: 10.1101/gad.191049.112.

10.

Classification of plant associated bacteria using RIF, a computationally derived DNA marker.

Schneider KL, Marrero G, Alvarez AM, Presting GG.

PLoS One. 2011 Apr 21;6(4):e18496. doi: 10.1371/journal.pone.0018496.

11.

Epigenetic aspects of centromere function in plants.

Birchler JA, Gao Z, Sharma A, Presting GG, Han F.

Curr Opin Plant Biol. 2011 Apr;14(2):217-22. doi: 10.1016/j.pbi.2011.02.004. Epub 2011 Mar 14. Review.

PMID:
21411364
12.

Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning.

Gent JI, Schneider KL, Topp CN, Rodriguez C, Presting GG, Dawe RK.

Epigenetics Chromatin. 2011 Feb 25;4:3. doi: 10.1186/1756-8935-4-3.

13.

The Hawaiian Rhodophyta Biodiversity Survey (2006-2010): a summary of principal findings.

Sherwood AR, Kurihara A, Conklin KY, Sauvage T, Presting GG.

BMC Plant Biol. 2010 Nov 22;10:258. doi: 10.1186/1471-2229-10-258.

14.

Widespread gene conversion in centromere cores.

Shi J, Wolf SE, Burke JM, Presting GG, Ross-Ibarra J, Dawe RK.

PLoS Biol. 2010 Mar 9;8(3):e1000327. doi: 10.1371/journal.pbio.1000327.

15.

JunctionViewer: customizable annotation software for repeat-rich genomic regions.

Wolfgruber TK, Presting GG.

BMC Bioinformatics. 2010 Jan 12;11:23. doi: 10.1186/1471-2105-11-23.

16.

The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.

17.

Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons.

Wolfgruber TK, Sharma A, Schneider KL, Albert PS, Koo DH, Shi J, Gao Z, Han F, Lee H, Xu R, Allison J, Birchler JA, Jiang J, Dawe RK, Presting GG.

PLoS Genet. 2009 Nov;5(11):e1000743. doi: 10.1371/journal.pgen.1000743. Epub 2009 Nov 20.

18.

The Hawaiian Algal Database: a laboratory LIMS and online resource for biodiversity data.

Wang N, Sherwood AR, Kurihara A, Conklin KY, Sauvage T, Presting GG.

BMC Plant Biol. 2009 Sep 4;9:117. doi: 10.1186/1471-2229-9-117.

19.

Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations.

Sharma A, Schneider KL, Presting GG.

Proc Natl Acad Sci U S A. 2008 Oct 7;105(40):15470-4. doi: 10.1073/pnas.0805694105. Epub 2008 Oct 1.

20.

Application of universally amplifying plastid primers to environmental sampling of a stream periphyton community.

Sherwood AR, Chan YL, Presting GG.

Mol Ecol Resour. 2008 Sep;8(5):1011-4. doi: 10.1111/j.1755-0998.2008.02138.x. Epub 2008 Jun 28.

PMID:
21585957
21.

Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity.

Sharma A, Presting GG.

Mol Genet Genomics. 2008 Feb;279(2):133-47. Epub 2007 Nov 14.

PMID:
18000683
22.

Precise centromere mapping using a combination of repeat junction markers and chromatin immunoprecipitation-polymerase chain reaction.

Luce AC, Sharma A, Mollere OS, Wolfgruber TK, Nagaki K, Jiang J, Presting GG, Dawe RK.

Genetics. 2006 Oct;174(2):1057-61. Epub 2006 Sep 1.

23.

Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome.

Lai CW, Yu Q, Hou S, Skelton RL, Jones MR, Lewis KL, Murray J, Eustice M, Guan P, Agbayani R, Moore PH, Ming R, Presting GG.

Mol Genet Genomics. 2006 Jul;276(1):1-12. Epub 2006 May 16.

PMID:
16703363
24.

Mapping multiple co-sequenced T-DNA integration sites within the Arabidopsis genome.

Presting GG.

Bioinformatics. 2003 Mar 22;19(5):579-86.

PMID:
12651715
25.

Sequence organization of barley centromeres.

Hudakova S, Michalek W, Presting GG, ten Hoopen R, dos Santos K, Jasencakova Z, Schubert I.

Nucleic Acids Res. 2001 Dec 15;29(24):5029-35.

26.

A framework for sequencing the rice genome.

Presting GG, Budiman MA, Wood T, Yu Y, Kim HR, Goicoechea JL, Fang E, Blackman B, Jiang J, Woo SS, Dean RA, Frisch D, Wing RA.

Novartis Found Symp. 2001;236:13-24; discussion 24-7. Review.

PMID:
11387975
28.

Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.

Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH.

Plant Physiol. 2001 Mar;125(3):1325-41.

29.

A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes.

Presting GG, Malysheva L, Fuchs J, Schubert I.

Plant J. 1998 Dec;16(6):721-8.

30.

Telomere-homologous sequences occur near the centromeres of many tomato chromosomes.

Presting GG, Frary A, Pillen K, Tanksley SD.

Mol Gen Genet. 1996 Jul 19;251(5):526-31.

PMID:
8709958
31.

Molecular mapping of the centromeres of tomato chromosomes 7 and 9.

Frary A, Presting GG, Tanksley SD.

Mol Gen Genet. 1996 Feb 25;250(3):295-304.

PMID:
8602144

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