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Items: 1 to 50 of 239

1.

Measurement of residual dipolar couplings in methyl groups via carbon detection.

Williams RV, Yang JY, Moremen KW, Amster IJ, Prestegard JH.

J Biomol NMR. 2019 Apr;73(3-4):191-198. doi: 10.1007/s10858-019-00245-5. Epub 2019 Apr 30.

PMID:
31041649
2.

NMR Resonance Assignment Methodology: Characterizing Large Sparsely Labeled Glycoproteins.

Chalmers GR, Eletsky A, Morris LC, Yang JY, Tian F, Woods RJ, Moremen KW, Prestegard JH.

J Mol Biol. 2019 May 31;431(12):2369-2382. doi: 10.1016/j.jmb.2019.04.029. Epub 2019 Apr 26.

PMID:
31034888
3.

Paramagnetic Tag for Glycosylation Sites in Glycoproteins: Structural Constraints on Heparan Sulfate Binding to Robo1.

Moure MJ, Eletsky A, Gao Q, Morris LC, Yang JY, Chapla D, Zhao Y, Zong C, Amster IJ, Moremen KW, Boons GJ, Prestegard JH.

ACS Chem Biol. 2018 Sep 21;13(9):2560-2567. doi: 10.1021/acschembio.8b00511. Epub 2018 Aug 16.

4.

Structural Characterization of a Heparan Sulfate Pentamer Interacting with LAR-Ig1-2.

Gao Q, Yang JY, Moremen KW, Flanagan JG, Prestegard JH.

Biochemistry. 2018 Apr 17;57(15):2189-2199. doi: 10.1021/acs.biochem.8b00241. Epub 2018 Apr 3.

5.

Glycosylation Promotes the Random Coil to Helix Transition in a Region of a Protist Skp1 Associated with F-Box Binding.

Xu X, Eletsky A, Sheikh MO, Prestegard JH, West CM.

Biochemistry. 2018 Feb 6;57(5):511-515. doi: 10.1021/acs.biochem.7b01033. Epub 2017 Dec 28.

6.

Perdeuterated and 13C-enriched myo-inositol for DNP assisted monitoring of enzymatic phosphorylation by inositol-3-kinase.

Moure MJ, Zhuo Y, Boons GJ, Prestegard JH.

Chem Commun (Camb). 2017 Nov 16;53(92):12398-12401. doi: 10.1039/c7cc07023c.

7.

O2 sensing-associated glycosylation exposes the F-box-combining site of the Dictyostelium Skp1 subunit in E3 ubiquitin ligases.

Sheikh MO, Thieker D, Chalmers G, Schafer CM, Ishihara M, Azadi P, Woods RJ, Glushka JN, Bendiak B, Prestegard JH, West CM.

J Biol Chem. 2017 Nov 17;292(46):18897-18915. doi: 10.1074/jbc.M117.809160. Epub 2017 Sep 19.

8.

Dynamic nuclear polarization facilitates monitoring of pyruvate metabolism in Trypanosoma brucei.

Zhuo Y, Cordeiro CD, Hekmatyar SK, Docampo R, Prestegard JH.

J Biol Chem. 2017 Nov 3;292(44):18161-18168. doi: 10.1074/jbc.M117.807495. Epub 2017 Sep 8.

9.

Oligosaccharides and Polysaccharides.

Prestegard JH, Liu J, Widmalm G.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 3.
2017.

10.

Mistakes in translation: Reflections on mechanism.

Liu Y, Sharp JS, Do DH, Kahn RA, Schwalbe H, Buhr F, Prestegard JH.

PLoS One. 2017 Jun 29;12(6):e0180566. doi: 10.1371/journal.pone.0180566. eCollection 2017.

11.

NMR characterization of HtpG, the E. coli Hsp90, using sparse labeling with 13C-methyl alanine.

Pederson K, Chalmers GR, Gao Q, Elnatan D, Ramelot TA, Ma LC, Montelione GT, Kennedy MA, Agard DA, Prestegard JH.

J Biomol NMR. 2017 Jul;68(3):225-236. doi: 10.1007/s10858-017-0123-8. Epub 2017 Jun 26.

12.

Extension and validation of the GLYCAM force field parameters for modeling glycosaminoglycans.

Singh A, Tessier MB, Pederson K, Wang X, Venot AP, Boons GJ, Prestegard JH, Woods RJ.

Can J Chem. 2016 Nov;94(11):927-935. doi: 10.1139/cjc-2015-0606. Epub 2016 Feb 9.

13.

NMR assignments of sparsely labeled proteins using a genetic algorithm.

Gao Q, Chalmers GR, Moremen KW, Prestegard JH.

J Biomol NMR. 2017 Apr;67(4):283-294. doi: 10.1007/s10858-017-0101-1. Epub 2017 Mar 13.

14.

Structural Aspects of Heparan Sulfate Binding to Robo1-Ig1-2.

Gao Q, Chen CY, Zong C, Wang S, Ramiah A, Prabhakar P, Morris LC, Boons GJ, Moremen KW, Prestegard JH.

ACS Chem Biol. 2016 Nov 18;11(11):3106-3113. Epub 2016 Sep 29.

15.

Glycosylation Alters Dimerization Properties of a Cell-surface Signaling Protein, Carcinoembryonic Antigen-related Cell Adhesion Molecule 1 (CEACAM1).

Zhuo Y, Yang JY, Moremen KW, Prestegard JH.

J Biol Chem. 2016 Sep 16;291(38):20085-95. doi: 10.1074/jbc.M116.740050. Epub 2016 Jul 28.

16.

Direct NOE simulation from long MD trajectories.

Chalmers G, Glushka JN, Foley BL, Woods RJ, Prestegard JH.

J Magn Reson. 2016 Apr;265:1-9. doi: 10.1016/j.jmr.2016.01.006. Epub 2016 Jan 21.

17.

Nuclear Magnetic Resonance Insight into the Multiple Glycosaminoglycan Binding Modes of the Link Module from Human TSG-6.

Park Y, Jowitt TA, Day AJ, Prestegard JH.

Biochemistry. 2016 Jan 19;55(2):262-76. doi: 10.1021/acs.biochem.5b01148. Epub 2016 Jan 6.

18.

Spin Diffusion Editing for Structural Fingerprints of Therapeutic Antibodies.

Franks J, Glushka JN, Jones MT, Live DH, Zou Q, Prestegard JH.

Anal Chem. 2016 Jan 19;88(2):1320-7. doi: 10.1021/acs.analchem.5b03777. Epub 2015 Dec 22.

19.

A community resource of experimental data for NMR / X-ray crystal structure pairs.

Everett JK, Tejero R, Murthy SB, Acton TB, Aramini JM, Baran MC, Benach J, Cort JR, Eletsky A, Forouhar F, Guan R, Kuzin AP, Lee HW, Liu G, Mani R, Mao B, Mills JL, Montelione AF, Pederson K, Powers R, Ramelot T, Rossi P, Seetharaman J, Snyder D, Swapna GV, Vorobiev SM, Wu Y, Xiao R, Yang Y, Arrowsmith CH, Hunt JF, Kennedy MA, Prestegard JH, Szyperski T, Tong L, Montelione GT.

Protein Sci. 2016 Jan;25(1):30-45. doi: 10.1002/pro.2774. Epub 2015 Sep 22. Review.

20.

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.

Rosato A, Vranken W, Fogh RH, Ragan TJ, Tejero R, Pederson K, Lee HW, Prestegard JH, Yee A, Wu B, Lemak A, Houliston S, Arrowsmith CH, Kennedy M, Acton TB, Xiao R, Liu G, Montelione GT, Vuister GW.

J Biomol NMR. 2015 Aug;62(4):413-24. doi: 10.1007/s10858-015-9953-4. Epub 2015 Jun 14.

21.

Interactions of the Chemokine CCL5/RANTES with Medium-Sized Chondroitin Sulfate Ligands.

Deshauer C, Morgan AM, Ryan EO, Handel TM, Prestegard JH, Wang X.

Structure. 2015 Jun 2;23(6):1066-77. doi: 10.1016/j.str.2015.03.024. Epub 2015 May 14.

22.

Impact of sulfation pattern on the conformation and dynamics of sulfated fucan oligosaccharides as revealed by NMR and MD.

Queiroz IN, Wang X, Glushka JN, Santos GR, Valente AP, Prestegard JH, Woods RJ, Mourão PA, Pomin VH.

Glycobiology. 2015 May;25(5):535-47. doi: 10.1093/glycob/cwu184. Epub 2014 Dec 19.

23.

Structural characterization of a flexible two-domain protein in solution using small angle X-ray scattering and NMR data.

Lemak A, Wu B, Yee A, Houliston S, Lee HW, Gutmanas A, Fang X, Garcia M, Semesi A, Wang YX, Prestegard JH, Arrowsmith CH.

Structure. 2014 Dec 2;22(12):1862-1874. doi: 10.1016/j.str.2014.09.013. Epub 2014 Nov 6.

24.

Direct determination of multiple ligand interactions with the extracellular domain of the calcium-sensing receptor.

Zhang C, Zhuo Y, Moniz HA, Wang S, Moremen KW, Prestegard JH, Brown EM, Yang JJ.

J Biol Chem. 2014 Nov 28;289(48):33529-42. doi: 10.1074/jbc.M114.604652. Epub 2014 Oct 10.

25.

Solution structure of a C-terminal fragment (175-257) of CV_0373 protein from Chromobacterium violaceum adopts a winged helix-turn-helix (wHTH) fold.

Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA.

J Biomol NMR. 2014 Nov;60(2-3):197-202. doi: 10.1007/s10858-014-9860-0. Epub 2014 Oct 1. No abstract available.

26.

Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain.

Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA.

J Biomol NMR. 2014 Nov;60(2-3):189-95. doi: 10.1007/s10858-014-9858-7. Epub 2014 Aug 31. No abstract available.

27.

Structural characterization of the DC-SIGN-Lewis(X) complex.

Pederson K, Mitchell DA, Prestegard JH.

Biochemistry. 2014 Sep 9;53(35):5700-9. doi: 10.1021/bi5005014. Epub 2014 Aug 22.

28.

Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the Human Cancer Protein Interaction Network.

Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T.

J Struct Funct Genomics. 2014 Dec;15(4):209-14. doi: 10.1007/s10969-014-9185-y. Epub 2014 Jul 3.

29.

Sparse labeling of proteins: structural characterization from long range constraints.

Prestegard JH, Agard DA, Moremen KW, Lavery LA, Morris LC, Pederson K.

J Magn Reson. 2014 Apr;241:32-40. doi: 10.1016/j.jmr.2013.12.012. Review.

30.

Immunoglobulin G1 Fc domain motions: implications for Fc engineering.

Frank M, Walker RC, Lanzilotta WN, Prestegard JH, Barb AW.

J Mol Biol. 2014 Apr 17;426(8):1799-811. doi: 10.1016/j.jmb.2014.01.011. Epub 2014 Feb 9.

31.

Interaction of Fapp1 with Arf1 and PI4P at a membrane surface: an example of coincidence detection.

Liu Y, Kahn RA, Prestegard JH.

Structure. 2014 Mar 4;22(3):421-30. doi: 10.1016/j.str.2013.12.011. Epub 2014 Jan 23.

32.

Solution NMR structure of CD1104B from pathogenic Clostridium difficile reveals a distinct α-helical architecture and provides first structural representative of protein domain family PF14203.

Pulavarti SV, Eletsky A, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T.

J Struct Funct Genomics. 2013 Dec;14(4):155-60. doi: 10.1007/s10969-013-9164-8. Epub 2013 Sep 19.

33.

Protein structure validation and identification from unassigned residual dipolar coupling data using 2D-PDPA.

Fahim A, Mukhopadhyay R, Yandle R, Prestegard JH, Valafar H.

Molecules. 2013 Aug 22;18(9):10162-88. doi: 10.3390/molecules180910162.

34.

Chemokine oligomerization in cell signaling and migration.

Wang X, Sharp JS, Handel TM, Prestegard JH.

Prog Mol Biol Transl Sci. 2013;117:531-78. doi: 10.1016/B978-0-12-386931-9.00020-9. Review.

35.

Probing alanine transaminase catalysis with hyperpolarized 13CD3-pyruvate.

Barb AW, Hekmatyar SK, Glushka JN, Prestegard JH.

J Magn Reson. 2013 Mar;228:59-65. doi: 10.1016/j.jmr.2012.12.013. Epub 2013 Jan 4.

36.

Refolded recombinant Siglec5 for NMR investigation of complex carbohydrate binding.

Barb AW, Wang X, Prestegard JH.

Protein Expr Purif. 2013 Apr;88(2):183-9. doi: 10.1016/j.pep.2013.01.005. Epub 2013 Jan 12.

37.

Chemical shift prediction for denatured proteins.

Prestegard JH, Sahu SC, Nkari WK, Morris LC, Live D, Gruta C.

J Biomol NMR. 2013 Feb;55(2):201-9. doi: 10.1007/s10858-012-9702-x. Epub 2013 Jan 8.

38.

Solution NMR structure of yeast succinate dehydrogenase flavinylation factor Sdh5 reveals a putative Sdh1 binding site.

Eletsky A, Jeong MY, Kim H, Lee HW, Xiao R, Pagliarini DJ, Prestegard JH, Winge DR, Montelione GT, Szyperski T.

Biochemistry. 2012 Oct 30;51(43):8475-7. doi: 10.1021/bi301171u. Epub 2012 Oct 19.

39.

Structure of a specialized acyl carrier protein essential for lipid A biosynthesis with very long-chain fatty acids in open and closed conformations.

Ramelot TA, Rossi P, Forouhar F, Lee HW, Yang Y, Ni S, Unser S, Lew S, Seetharaman J, Xiao R, Acton TB, Everett JK, Prestegard JH, Hunt JF, Montelione GT, Kennedy MA.

Biochemistry. 2012 Sep 18;51(37):7239-49. doi: 10.1021/bi300546b. Epub 2012 Sep 7.

40.

Lanthanide binding and IgG affinity construct: potential applications in solution NMR, MRI, and luminescence microscopy.

Barb AW, Ho TG, Flanagan-Steet H, Prestegard JH.

Protein Sci. 2012 Oct;21(10):1456-66. doi: 10.1002/pro.2133. Epub 2012 Aug 22.

41.

NMR characterization of immunoglobulin G Fc glycan motion on enzymatic sialylation.

Barb AW, Meng L, Gao Z, Johnson RW, Moremen KW, Prestegard JH.

Biochemistry. 2012 Jun 5;51(22):4618-26. Epub 2012 May 22.

42.

Human cyclin-dependent kinase 2-associated protein 1 (CDK2AP1) is dimeric in its disulfide-reduced state, with natively disordered N-terminal region.

Ertekin A, Aramini JM, Rossi P, Leonard PG, Janjua H, Xiao R, Maglaqui M, Lee HW, Prestegard JH, Montelione GT.

J Biol Chem. 2012 May 11;287(20):16541-9. doi: 10.1074/jbc.M112.343863. Epub 2012 Mar 14.

43.

Exploiting enzyme specificities in digestions of chondroitin sulfates A and C: production of well-defined hexasaccharides.

Pomin VH, Park Y, Huang R, Heiss C, Sharp JS, Azadi P, Prestegard JH.

Glycobiology. 2012 Jun;22(6):826-38. doi: 10.1093/glycob/cws055. Epub 2012 Feb 17.

44.

Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771.

Eletsky A, Petrey D, Zhang QC, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Honig B, Montelione GT, Szyperski T.

J Struct Funct Genomics. 2012 Mar;13(1):1-7. doi: 10.1007/s10969-011-9121-3. Epub 2012 Jan 6. Erratum in: J Struct Funct Genomics. 2012 Mar;13(1):47.

45.

Kinetics of Neuraminidase Action on Glycoproteins by 1D and 2D NMR.

Barb AW, Glushka JN, Prestegard JH.

J Chem Educ. 2011 Jan 1;88(1):95-97.

46.

NMR detection and characterization of sialylated glycoproteins and cell surface polysaccharides.

Barb AW, Freedberg DI, Battistel MD, Prestegard JH.

J Biomol NMR. 2011 Sep;51(1-2):163-71. doi: 10.1007/s10858-011-9550-0. Epub 2011 Sep 27.

47.

Effect of macronutrients, age, and obesity on 6- and 24-h postprandial glucose metabolism in cats.

Hoenig M, Jordan ET, Glushka J, Kley S, Patil A, Waldron M, Prestegard JH, Ferguson DC, Wu S, Olson DE.

Am J Physiol Regul Integr Comp Physiol. 2011 Dec;301(6):R1798-807. doi: 10.1152/ajpregu.00342.2011. Epub 2011 Sep 21.

48.

Multi-dimensional NMR without coherence transfer: minimizing losses in large systems.

Liu Y, Prestegard JH.

J Magn Reson. 2011 Oct;212(2):289-98. doi: 10.1016/j.jmr.2011.07.007. Epub 2011 Jul 21.

49.

Oligomeric structure of the chemokine CCL5/RANTES from NMR, MS, and SAXS data.

Wang X, Watson C, Sharp JS, Handel TM, Prestegard JH.

Structure. 2011 Aug 10;19(8):1138-48. doi: 10.1016/j.str.2011.06.001.

50.

Exchange facilitated indirect detection of hyperpolarized 15ND2-amido-glutamine.

Barb AW, Hekmatyar SK, Glushka JN, Prestegard JH.

J Magn Reson. 2011 Oct;212(2):304-10. doi: 10.1016/j.jmr.2011.07.008. Epub 2011 Jul 21.

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