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Items: 1 to 50 of 85

1.
2.

Development of a Quorum-Sensing Based Circuit for Control of Coculture Population Composition in a Naringenin Production System.

Dinh CV, Chen X, Prather KLJ.

ACS Synth Biol. 2020 Mar 20;9(3):590-597. doi: 10.1021/acssynbio.9b00451. Epub 2020 Feb 21.

PMID:
32040906
3.

Development of an autonomous and bifunctional quorum-sensing circuit for metabolic flux control in engineered Escherichia coli.

Dinh CV, Prather KLJ.

Proc Natl Acad Sci U S A. 2019 Dec 17;116(51):25562-25568. doi: 10.1073/pnas.1911144116. Epub 2019 Dec 3.

PMID:
31796590
4.

Development of a Vanillate Biosensor for the Vanillin Biosynthesis Pathway in E. coli.

Kunjapur AM, Prather KLJ.

ACS Synth Biol. 2019 Sep 20;8(9):1958-1967. doi: 10.1021/acssynbio.9b00071. Epub 2019 Sep 3.

PMID:
31461264
5.

From lignocellulosic residues to market: Production and commercial potential of xylooligosaccharides.

Amorim C, Silvério SC, Prather KLJ, Rodrigues LR.

Biotechnol Adv. 2019 Nov 15;37(7):107397. doi: 10.1016/j.biotechadv.2019.05.003. Epub 2019 May 7. Review. Spanish.

PMID:
31075307
6.

Engineered microbial biofuel production and recovery under supercritical carbon dioxide.

Boock JT, Freedman AJE, Tompsett GA, Muse SK, Allen AJ, Jackson LA, Castro-Dominguez B, Timko MT, Prather KLJ, Thompson JR.

Nat Commun. 2019 Feb 4;10(1):587. doi: 10.1038/s41467-019-08486-6.

7.

Chemistry as biology by design.

Prather KLJ.

Microb Biotechnol. 2019 Jan;12(1):30-31. doi: 10.1111/1751-7915.13345. Epub 2018 Nov 28. No abstract available.

8.

Downscale fermentation for xylooligosaccharides production by recombinant Bacillus subtilis 3610.

Amorim C, Silvério SC, Gonçalves RFS, Pinheiro AC, Silva S, Coelho E, Coimbra MA, Prather KLJ, Rodrigues LR.

Carbohydr Polym. 2019 Feb 1;205:176-183. doi: 10.1016/j.carbpol.2018.09.088. Epub 2018 Oct 3.

PMID:
30446093
9.

Isolation, Development, and Genomic Analysis of Bacillus megaterium SR7 for Growth and Metabolite Production Under Supercritical Carbon Dioxide.

Freedman AJE, Peet KC, Boock JT, Penn K, Prather KLJ, Thompson JR.

Front Microbiol. 2018 Sep 25;9:2152. doi: 10.3389/fmicb.2018.02152. eCollection 2018.

10.

Single-step production of arabino-xylooligosaccharides by recombinant Bacillus subtilis 3610 cultivated in brewers' spent grain.

Amorim C, Silvério SC, Silva SP, Coelho E, Coimbra MA, Prather KLJ, Rodrigues LR.

Carbohydr Polym. 2018 Nov 1;199:546-554. doi: 10.1016/j.carbpol.2018.07.017. Epub 2018 Jul 7.

PMID:
30143161
11.

Rational design of thiolase substrate specificity for metabolic engineering applications.

Bonk BM, Tarasova Y, Hicks MA, Tidor B, Prather KLJ.

Biotechnol Bioeng. 2018 Sep;115(9):2167-2182. doi: 10.1002/bit.26737. Epub 2018 Jun 29.

12.

The power of synthetic biology for bioproduction, remediation and pollution control: The UN's Sustainable Development Goals will inevitably require the application of molecular biology and biotechnology on a global scale.

de Lorenzo V, Prather KL, Chen GQ, O'Day E, von Kameke C, Oyarzún DA, Hosta-Rigau L, Alsafar H, Cao C, Ji W, Okano H, Roberts RJ, Ronaghi M, Yeung K, Zhang F, Lee SY.

EMBO Rep. 2018 Apr;19(4). pii: e45658. doi: 10.15252/embr.201745658. Epub 2018 Mar 26. No abstract available.

13.

Layered dynamic regulation for improving metabolic pathway productivity in Escherichia coli.

Doong SJ, Gupta A, Prather KLJ.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):2964-2969. doi: 10.1073/pnas.1716920115. Epub 2018 Mar 5.

14.

Synthetic biology strategies for improving microbial synthesis of "green" biopolymers.

Anderson LA, Islam MA, Prather KLJ.

J Biol Chem. 2018 Apr 6;293(14):5053-5061. doi: 10.1074/jbc.TM117.000368. Epub 2018 Jan 16. Review.

15.

A Robust CRISPR Interference Gene Repression System in Pseudomonas.

Tan SZ, Reisch CR, Prather KLJ.

J Bacteriol. 2018 Mar 12;200(7). pii: e00575-17. doi: 10.1128/JB.00575-17. Print 2018 Apr 1.

16.

Pathway towards renewable chemicals.

Haslinger K, Prather KLJ.

Nat Microbiol. 2017 Dec;2(12):1580-1581. doi: 10.1038/s41564-017-0071-9. No abstract available.

PMID:
29176700
17.

Dynamic pathway regulation: recent advances and methods of construction.

Tan SZ, Prather KL.

Curr Opin Chem Biol. 2017 Dec;41:28-35. doi: 10.1016/j.cbpa.2017.10.004. Epub 2017 Oct 20. Review.

PMID:
29059607
18.

Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit.

Gupta A, Reizman IM, Reisch CR, Prather KL.

Nat Biotechnol. 2017 Mar;35(3):273-279. doi: 10.1038/nbt.3796. Epub 2017 Feb 13.

19.

Scarless Cas9 Assisted Recombineering (no-SCAR) in Escherichia coli, an Easy-to-Use System for Genome Editing.

Reisch CR, Prather KLJ.

Curr Protoc Mol Biol. 2017 Jan 5;117:31.8.1-31.8.20. doi: 10.1002/cpmb.29.

PMID:
28060411
20.

Porting the synthetic D-glucaric acid pathway from Escherichia coli to Saccharomyces cerevisiae.

Gupta A, Hicks MA, Manchester SP, Prather KL.

Biotechnol J. 2016 Sep;11(9):1201-8. doi: 10.1002/biot.201500563. Epub 2016 Jun 29.

PMID:
27312887
21.

Towards effective non-viral gene delivery vector.

Šimčíková M, Prather KL, Prazeres DM, Monteiro GA.

Biotechnol Genet Eng Rev. 2015 Apr-Oct;31(1-2):82-107. doi: 10.1080/02648725.2016.1178011. Review.

PMID:
27160661
22.

Improvement of DNA minicircle production by optimization of the secondary structure of the 5'-UTR of ParA resolvase.

Šimčíková M, Alves CPA, Brito L, Prather KLJ, Prazeres DMF, Monteiro GA.

Appl Microbiol Biotechnol. 2016 Aug;100(15):6725-6737. doi: 10.1007/s00253-016-7565-x. Epub 2016 May 5.

PMID:
27147534
23.

Deregulation of S-adenosylmethionine biosynthesis and regeneration improves methylation in the E. coli de novo vanillin biosynthesis pathway.

Kunjapur AM, Hyun JC, Prather KL.

Microb Cell Fact. 2016 Apr 11;15:61. doi: 10.1186/s12934-016-0459-x.

24.

Modular and selective biosynthesis of gasoline-range alkanes.

Sheppard MJ, Kunjapur AM, Prather KLJ.

Metab Eng. 2016 Jan;33:28-40. doi: 10.1016/j.ymben.2015.10.010. Epub 2015 Nov 10.

PMID:
26556131
25.

Biological synthesis unbounded?

Pfleger BF, Prather KL.

Nat Biotechnol. 2015 Nov;33(11):1148-9. doi: 10.1038/nbt.3399. No abstract available.

PMID:
26544145
26.

Controlling Central Carbon Metabolism for Improved Pathway Yields in Saccharomyces cerevisiae.

Tan SZ, Manchester S, Prather KL.

ACS Synth Biol. 2016 Feb 19;5(2):116-24. doi: 10.1021/acssynbio.5b00164. Epub 2015 Nov 18.

PMID:
26544022
27.

Improvement of glucaric acid production in E. coli via dynamic control of metabolic fluxes.

Reizman IM, Stenger AR, Reisch CR, Gupta A, Connors NC, Prather KL.

Metab Eng Commun. 2015 Dec 1;2:109-116.

28.

The no-SCAR (Scarless Cas9 Assisted Recombineering) system for genome editing in Escherichia coli.

Reisch CR, Prather KL.

Sci Rep. 2015 Oct 14;5:15096. doi: 10.1038/srep15096.

29.

Screening and modular design for metabolic pathway optimization.

Boock JT, Gupta A, Prather KLj.

Curr Opin Biotechnol. 2015 Dec;36:189-98. doi: 10.1016/j.copbio.2015.08.013. Epub 2015 Oct 1. Review.

PMID:
26432992
30.

Dynamic metabolic engineering: New strategies for developing responsive cell factories.

Brockman IM, Prather KL.

Biotechnol J. 2015 Sep;10(9):1360-9. doi: 10.1002/biot.201400422. Epub 2015 Apr 13. Review.

31.

Heterologous production of caffeic acid from tyrosine in Escherichia coli.

Rodrigues JL, Araújo RG, Prather KL, Kluskens LD, Rodrigues LR.

Enzyme Microb Technol. 2015 Apr;71:36-44. doi: 10.1016/j.enzmictec.2015.01.001. Epub 2015 Jan 14.

PMID:
25765308
32.

Production of curcuminoids from tyrosine by a metabolically engineered Escherichia coli using caffeic acid as an intermediate.

Rodrigues JL, Araújo RG, Prather KL, Kluskens LD, Rodrigues LR.

Biotechnol J. 2015 Apr;10(4):599-609. doi: 10.1002/biot.201400637. Epub 2015 Feb 18.

PMID:
25641677
33.

Heterologous production of curcuminoids.

Rodrigues JL, Prather KL, Kluskens LD, Rodrigues LR.

Microbiol Mol Biol Rev. 2015 Mar;79(1):39-60. doi: 10.1128/MMBR.00031-14. Review.

34.

Microbial engineering for aldehyde synthesis.

Kunjapur AM, Prather KL.

Appl Environ Microbiol. 2015 Mar;81(6):1892-901. doi: 10.1128/AEM.03319-14. Epub 2015 Jan 9. Review.

35.

Dynamic knockdown of E. coli central metabolism for redirecting fluxes of primary metabolites.

Brockman IM, Prather KLJ.

Metab Eng. 2015 Mar;28:104-113. doi: 10.1016/j.ymben.2014.12.005. Epub 2014 Dec 24.

36.

Improving product yields on D-glucose in Escherichia coli via knockout of pgi and zwf and feeding of supplemental carbon sources.

Shiue E, Brockman IM, Prather KL.

Biotechnol Bioeng. 2015 Mar;112(3):579-87. doi: 10.1002/bit.25470. Epub 2014 Nov 24.

37.

Retro-biosynthetic screening of a modular pathway design achieves selective route for microbial synthesis of 4-methyl-pentanol.

Sheppard MJ, Kunjapur AM, Wenck SJ, Prather KL.

Nat Commun. 2014 Sep 24;5:5031. doi: 10.1038/ncomms6031.

PMID:
25248664
38.

Selection of Escherichia coli heat shock promoters toward their application as stress probes.

Rodrigues JL, Sousa M, Prather KL, Kluskens LD, Rodrigues LR.

J Biotechnol. 2014 Oct 20;188:61-71. doi: 10.1016/j.jbiotec.2014.08.005. Epub 2014 Aug 14.

PMID:
25128614
39.

Synthesis and accumulation of aromatic aldehydes in an engineered strain of Escherichia coli.

Kunjapur AM, Tarasova Y, Prather KL.

J Am Chem Soc. 2014 Aug 20;136(33):11644-54. doi: 10.1021/ja506664a. Epub 2014 Aug 8.

PMID:
25076127
40.

Plasmid DNA production with Escherichia coli GALG20, a pgi-gene knockout strain: fermentation strategies and impact on downstream processing.

Gonçalves GA, Prather KL, Monteiro GA, Carnes AE, Prazeres DM.

J Biotechnol. 2014 Sep 30;186:119-27. doi: 10.1016/j.jbiotec.2014.06.008. Epub 2014 Jul 1.

PMID:
24995846
41.

Engineering E. coli for the biosynthesis of 3-hydroxy-γ-butyrolactone (3HBL) and 3,4-dihydroxybutyric acid (3,4-DHBA) as value-added chemicals from glucose as a sole carbon source.

Dhamankar H, Tarasova Y, Martin CH, Prather KL.

Metab Eng. 2014 Sep;25:72-81. doi: 10.1016/j.ymben.2014.06.004. Epub 2014 Jun 17.

PMID:
24954784
42.

Evidence that the insertion events of IS2 transposition are biased towards abrupt compositional shifts in target DNA and modulated by a diverse set of culture parameters.

Gonçalves GA, Oliveira PH, Gomes AG, Prather KL, Lewis LA, Prazeres DM, Monteiro GA.

Appl Microbiol Biotechnol. 2014 Aug;98(15):6609-19. doi: 10.1007/s00253-014-5695-6. Epub 2014 Apr 27.

PMID:
24769900
43.

Engineering of Escherichia coli strains for plasmid biopharmaceutical production: scale-up challenges.

Gonçalves GA, Prather KL, Monteiro GA, Prazeres DM.

Vaccine. 2014 May 19;32(24):2847-50. doi: 10.1016/j.vaccine.2014.02.023. Epub 2014 Mar 2.

PMID:
24598722
44.

On the dual effect of glucose during production of pBAD/AraC-based minicircles.

Simcikova M, Prather KL, Prazeres DM, Monteiro GA.

Vaccine. 2014 May 19;32(24):2843-6. doi: 10.1016/j.vaccine.2014.02.035. Epub 2014 Mar 1.

PMID:
24593998
45.

Bioprospecting in the genomic age.

Hicks MA, Prather KL.

Adv Appl Microbiol. 2014;87:111-46. doi: 10.1016/B978-0-12-800261-2.00003-7. Review.

PMID:
24581390
46.

Improving D-glucaric acid production from myo-inositol in E. coli by increasing MIOX stability and myo-inositol transport.

Shiue E, Prather KL.

Metab Eng. 2014 Mar;22:22-31. doi: 10.1016/j.ymben.2013.12.002. Epub 2013 Dec 10.

PMID:
24333274
47.

Rate-limiting step analysis of the microbial desulfurization of dibenzothiophene in a model oil system.

Abin-Fuentes A, Leung JC, Mohamed Mel-S, Wang DI, Prather KL.

Biotechnol Bioeng. 2014 May;111(5):876-84. doi: 10.1002/bit.25148. Epub 2013 Nov 27.

48.
49.

The 'new' biotech industry.

Prather KL.

Curr Opin Biotechnol. 2013 Dec;24(6):963-4. doi: 10.1016/j.copbio.2013.10.002. Epub 2013 Oct 21. No abstract available.

PMID:
24157222
50.

Exploring the mechanism of biocatalyst inhibition in microbial desulfurization.

Abin-Fuentes A, Mohamed Mel-S, Wang DI, Prather KL.

Appl Environ Microbiol. 2013 Dec;79(24):7807-17. doi: 10.1128/AEM.02696-13. Epub 2013 Oct 4.

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