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Items: 34

1.

Haplotype Loci Under Selection in Canadian Durum Wheat Germplasm Over 60 Years of Breeding: Association With Grain Yield, Quality Traits, Protein Loss, and Plant Height.

N'Diaye A, Haile JK, Nilsen KT, Walkowiak S, Ruan Y, Singh AK, Clarke FR, Clarke JM, Pozniak CJ.

Front Plant Sci. 2018 Nov 5;9:1589. doi: 10.3389/fpls.2018.01589. eCollection 2018.

2.

High density genetic mapping of Fusarium head blight resistance QTL in tetraploid wheat.

Sari E, Berraies S, Knox RE, Singh AK, Ruan Y, Cuthbert RD, Pozniak CJ, Henriquez MA, Kumar S, Burt AJ, N'Diaye A, Konkin DJ, Cabral AL, Campbell HL, Wiebe K, Condie J, Lokuruge P, Meyer B, Fedak G, Clarke FR, Clarke JM, Somers DJ, Fobert PR.

PLoS One. 2018 Oct 11;13(10):e0204362. doi: 10.1371/journal.pone.0204362. eCollection 2018.

3.

Structural features of two major nucleolar organizer regions (NORs), Nor-B1 and Nor-B2, and chromosome-specific rRNA gene expression in wheat.

Handa H, Kanamori H, Tanaka T, Murata K, Kobayashi F, Robinson SJ, Koh CS, Pozniak CJ, Sharpe AG, Paux E; International Wheat Genome Sequencing Consortium, Wu J, Nasuda S.

Plant J. 2018 Dec;96(6):1148-1159. doi: 10.1111/tpj.14094. Epub 2018 Oct 27.

PMID:
30238531
4.

Genetic analysis of resistance to stripe rust in durum wheat (Triticum turgidum L. var. durum).

Lin X, N'Diaye A, Walkowiak S, Nilsen KT, Cory AT, Haile J, Kutcher HR, Ammar K, Loladze A, Huerta-Espino J, Clarke JM, Ruan Y, Knox R, Fobert P, Sharpe AG, Pozniak CJ.

PLoS One. 2018 Sep 19;13(9):e0203283. doi: 10.1371/journal.pone.0203283. eCollection 2018.

5.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
6.

The transcriptional landscape of polyploid wheat.

Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A; International Wheat Genome Sequencing Consortium, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar6089. doi: 10.1126/science.aar6089.

PMID:
30115782
7.

Starch digestibility and apparent metabolizable energy of western Canadian wheat market classes in broiler chickens.

Karunaratne ND, Abbott DA, Hucl PJ, Chibbar RN, Pozniak CJ, Classen HL.

Poult Sci. 2018 Aug 1;97(8):2818-2828. doi: 10.3382/ps/pey115.

PMID:
29771370
8.

Characterization and mapping of leaf rust resistance in four durum wheat cultivars.

Kthiri D, Loladze A, MacLachlan PR, N'Diaye A, Walkowiak S, Nilsen K, Dreisigacker S, Ammar K, Pozniak CJ.

PLoS One. 2018 May 10;13(5):e0197317. doi: 10.1371/journal.pone.0197317. eCollection 2018.

9.

High-density genetic mapping of a major QTL for resistance to multiple races of loose smut in a tetraploid wheat cross.

Kumar S, Knox RE, Singh AK, DePauw RM, Campbell HL, Isidro-Sanchez J, Clarke FR, Pozniak CJ, N'Daye A, Meyer B, Sharpe A, Ruan Y, Cuthbert RD, Somers D, Fedak G.

PLoS One. 2018 Feb 27;13(2):e0192261. doi: 10.1371/journal.pone.0192261. eCollection 2018.

10.

Genome re-sequencing and simple sequence repeat markers reveal the existence of divergent lineages in the Canadian Puccinia striiformis f. sp. tritici population with extensive DNA methylation.

Brar GS, Ali S, Qutob D, Ambrose S, Lou K, Maclachlan R, Pozniak CJ, Fu YB, Sharpe AG, Kutcher HR.

Environ Microbiol. 2018 Apr;20(4):1498-1515. doi: 10.1111/1462-2920.14067. Epub 2018 Mar 25.

PMID:
29411480
11.

Correction: Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.

N'Diaye A, Haile JK, Cory AT, Clarke FR, Clarke JM, Knox RE, Pozniak CJ.

PLoS One. 2017 Oct 24;12(10):e0187178. doi: 10.1371/journal.pone.0187178. eCollection 2017.

12.

Total Phenolic and Yellow Pigment Contents and Antioxidant Activities of Durum Wheat Milling Fractions.

Fu BX, Chiremba C, Pozniak CJ, Wang K, Nam S.

Antioxidants (Basel). 2017 Oct 14;6(4). pii: E78. doi: 10.3390/antiox6040078.

13.

Quantitative trait loci for resistance to stripe rust of wheat revealed using global field nurseries and opportunities for stacking resistance genes.

Bokore FE, Cuthbert RD, Knox RE, Randhawa HS, Hiebert CW, DePauw RM, Singh AK, Singh A, Sharpe AG, N'Diaye A, Pozniak CJ, McCartney C, Ruan Y, Berraies S, Meyer B, Munro C, Hay A, Ammar K, Huerta-Espino J, Bhavani S.

Theor Appl Genet. 2017 Dec;130(12):2617-2635. doi: 10.1007/s00122-017-2980-7. Epub 2017 Sep 14.

PMID:
28913655
14.

Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.

N'Diaye A, Haile JK, Fowler DB, Ammar K, Pozniak CJ.

Front Plant Sci. 2017 Aug 23;8:1434. doi: 10.3389/fpls.2017.01434. eCollection 2017.

15.

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

Avni R, Nave M, Barad O, Baruch K, Twardziok SO, Gundlach H, Hale I, Mascher M, Spannagl M, Wiebe K, Jordan KW, Golan G, Deek J, Ben-Zvi B, Ben-Zvi G, Himmelbach A, MacLachlan RP, Sharpe AG, Fritz A, Ben-David R, Budak H, Fahima T, Korol A, Faris JD, Hernandez A, Mikel MA, Levy AA, Steffenson B, Maccaferri M, Tuberosa R, Cattivelli L, Faccioli P, Ceriotti A, Kashkush K, Pourkheirandish M, Komatsuda T, Eilam T, Sela H, Sharon A, Ohad N, Chamovitz DA, Mayer KFX, Stein N, Ronen G, Peleg Z, Pozniak CJ, Akhunov ED, Distelfeld A.

Science. 2017 Jul 7;357(6346):93-97. doi: 10.1126/science.aan0032.

PMID:
28684525
16.

High density mapping and haplotype analysis of the major stem-solidness locus SSt1 in durum and common wheat.

Nilsen KT, N'Diaye A, MacLachlan PR, Clarke JM, Ruan Y, Cuthbert RD, Knox RE, Wiebe K, Cory AT, Walkowiak S, Beres BL, Graf RJ, Clarke FR, Sharpe AG, Distelfeld A, Pozniak CJ.

PLoS One. 2017 Apr 11;12(4):e0175285. doi: 10.1371/journal.pone.0175285. eCollection 2017.

17.

Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16.

Kassa MT, You FM, Hiebert CW, Pozniak CJ, Fobert PR, Sharpe AG, Menzies JG, Humphreys DG, Rezac Harrison N, Fellers JP, McCallum BD, McCartney CA.

BMC Plant Biol. 2017 Feb 15;17(1):45. doi: 10.1186/s12870-017-0993-7.

18.

Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map.

N'Diaye A, Haile JK, Cory AT, Clarke FR, Clarke JM, Knox RE, Pozniak CJ.

PLoS One. 2017 Jan 30;12(1):e0170941. doi: 10.1371/journal.pone.0170941. eCollection 2017. Erratum in: PLoS One. 2017 Oct 24;12 (10 ):e0187178.

19.

Fusarium Head Blight Resistance QTL in the Spring Wheat Cross Kenyon/86ISMN 2137.

McCartney CA, Brûlé-Babel AL, Fedak G, Martin RA, McCallum BD, Gilbert J, Hiebert CW, Pozniak CJ.

Front Microbiol. 2016 Oct 13;7:1542. eCollection 2016.

20.

A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1.

Kassa MT, Haas S, Schliephake E, Lewis C, You FM, Pozniak CJ, Krämer I, Perovic D, Sharpe AG, Fobert PR, Koch M, Wise IL, Fenwick P, Berry S, Simmonds J, Hourcade D, Senellart P, Duchalais L, Robert O, Förster J, Thomas JB, Friedt W, Ordon F, Uauy C, McCartney CA.

Theor Appl Genet. 2016 Aug;129(8):1507-17. doi: 10.1007/s00122-016-2720-4. Epub 2016 May 9.

PMID:
27160855
21.

Genetic mapping of SrCad and SNP marker development for marker-assisted selection of Ug99 stem rust resistance in wheat.

Kassa MT, You FM, Fetch TG, Fobert P, Sharpe A, Pozniak CJ, Menzies JG, Jordan MC, Humphreys G, Zhu T, Luo MC, McCartney CA, Hiebert CW.

Theor Appl Genet. 2016 Jul;129(7):1373-1382. doi: 10.1007/s00122-016-2709-z. Epub 2016 Apr 18.

PMID:
27091129
22.

Quantitative Trait Loci Associated with Phenological Development, Low-Temperature Tolerance, Grain Quality, and Agronomic Characters in Wheat (Triticum aestivum L.).

Fowler DB, N'Diaye A, Laudencia-Chingcuanco D, Pozniak CJ.

PLoS One. 2016 Mar 28;11(3):e0152185. doi: 10.1371/journal.pone.0152185. eCollection 2016.

23.

Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).

Cabral AL, Jordan MC, McCartney CA, You FM, Humphreys DG, MacLachlan R, Pozniak CJ.

BMC Plant Biol. 2014 Nov 29;14:340. doi: 10.1186/s12870-014-0340-1.

24.

A consensus framework map of durum wheat (Triticum durum Desf.) suitable for linkage disequilibrium analysis and genome-wide association mapping.

Maccaferri M, Cane' MA, Sanguineti MC, Salvi S, Colalongo MC, Massi A, Clarke F, Knox R, Pozniak CJ, Clarke JM, Fahima T, Dubcovsky J, Xu S, Ammar K, Karsai I, Vida G, Tuberosa R.

BMC Genomics. 2014 Oct 7;15:873. doi: 10.1186/1471-2164-15-873.

25.

Identification and mapping of leaf, stem and stripe rust resistance quantitative trait loci and their interactions in durum wheat.

Singh A, Pandey MP, Singh AK, Knox RE, Ammar K, Clarke JM, Clarke FR, Singh RP, Pozniak CJ, Depauw RM, McCallum BD, Cuthbert RD, Randhawa HS, Fetch TG Jr.

Mol Breed. 2013 Feb;31(2):405-418. Epub 2012 Oct 20.

26.

Identification of novel QTL for resistance to Fusarium head blight in a tetraploid wheat population.

Ruan Y, Comeau A, Langevin F, Hucl P, Clarke JM, Brule-Babel A, Pozniak CJ.

Genome. 2012 Dec;55(12):853-64. doi: 10.1139/gen-2012-0110. Epub 2012 Nov 1.

PMID:
23231604
27.

Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum).

Wiebe K, Harris NS, Faris JD, Clarke JM, Knox RE, Taylor GJ, Pozniak CJ.

Theor Appl Genet. 2010 Oct;121(6):1047-58. doi: 10.1007/s00122-010-1370-1. Epub 2010 Jun 18.

PMID:
20559817
28.

Chromosomal location of the cadmium uptake gene (Cdu1) in durum wheat.

Knox RE, Pozniak CJ, Clarke FR, Clarke JM, Houshmand S, Singh AK.

Genome. 2009 Sep;52(9):741-7. doi: 10.1139/g09-042.

PMID:
19935921
29.

Identification and validation of quantitative trait loci for grain protein concentration in adapted Canadian durum wheat populations.

Suprayogi Y, Pozniak CJ, Clarke FR, Clarke JM, Knox RE, Singh AK.

Theor Appl Genet. 2009 Aug;119(3):437-48. doi: 10.1007/s00122-009-1050-1. Epub 2009 May 12.

PMID:
19462147
30.

Comparative expression of Cbf genes in the Triticeae under different acclimation induction temperatures.

Campoli C, Matus-Cádiz MA, Pozniak CJ, Cattivelli L, Fowler DB.

Mol Genet Genomics. 2009 Aug;282(2):141-52. doi: 10.1007/s00438-009-0451-9. Epub 2009 May 7.

31.

Allelic variation at Psy1-A1 and association with yellow pigment in durum wheat grain.

Singh A, Reimer S, Pozniak CJ, Clarke FR, Clarke JM, Knox RE, Singh AK.

Theor Appl Genet. 2009 May;118(8):1539-48. doi: 10.1007/s00122-009-1001-x. Epub 2009 Mar 25.

PMID:
19319504
32.

Association mapping of yellow pigment in an elite collection of durum wheat cultivars and breeding lines.

Reimer S, Pozniak CJ, Clarke FR, Clarke JM, Somers DJ, Knox RE, Singh AK.

Genome. 2008 Dec;51(12):1016-25. doi: 10.1139/G08-083.

PMID:
19088814
33.

Mapping quantitative trait loci associated with barley net blotch resistance.

Grewal TS, Rossnagel BG, Pozniak CJ, Scoles GJ.

Theor Appl Genet. 2008 Feb;116(4):529-39. Epub 2007 Dec 11.

PMID:
18071668
34.

Identification of QTL and association of a phytoene synthase gene with endosperm colour in durum wheat.

Pozniak CJ, Knox RE, Clarke FR, Clarke JM.

Theor Appl Genet. 2007 Feb;114(3):525-37. Epub 2006 Nov 28.

PMID:
17131106

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