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Items: 27

1.

Gene Meter: Accurate abundance calculations of gene expression.

Pozhitkov AE, Noble PA.

Commun Integr Biol. 2017 Sep 6;10(4):e1329785. doi: 10.1080/19420889.2017.1329785. eCollection 2017.

2.

Gene expression in the twilight of death: The increase of thousands of transcripts has implications to transplantation, cancer, and forensic research.

Pozhitkov AE, Noble PA.

Bioessays. 2017 Sep;39(9). doi: 10.1002/bies.201700066. Epub 2017 Aug 8. Review.

PMID:
28787088
3.

Accurate predictions of postmortem interval using linear regression analyses of gene meter expression data.

Hunter MC, Pozhitkov AE, Noble PA.

Forensic Sci Int. 2017 Jun;275:90-101. doi: 10.1016/j.forsciint.2017.02.027. Epub 2017 Mar 4.

PMID:
28329724
4.

Tracing the dynamics of gene transcripts after organismal death.

Pozhitkov AE, Neme R, Domazet-LoŇ°o T, Leroux BG, Soni S, Tautz D, Noble PA.

Open Biol. 2017 Jan;7(1). pii: 160267. doi: 10.1098/rsob.160267.

5.

Datasets used to discover the microbial signatures of oral dysbiosis, periodontitis and edentulism in humans.

Colby Hunter M, Pozhitkov AE, Noble PA.

Data Brief. 2016 Nov 19;10:30-32. eCollection 2017 Feb.

6.

Increased Levels of Dissolved Titanium Are Associated With Peri-Implantitis - A Cross-Sectional Study.

Safioti LM, Kotsakis GA, Pozhitkov AE, Chung WO, Daubert DM.

J Periodontol. 2017 May;88(5):436-442. doi: 10.1902/jop.2016.160524. Epub 2016 Nov 18.

PMID:
27858551
7.

Microbial signatures of oral dysbiosis, periodontitis and edentulism revealed by Gene Meter methodology.

Hunter MC, Pozhitkov AE, Noble PA.

J Microbiol Methods. 2016 Dec;131:85-101. doi: 10.1016/j.mimet.2016.09.019. Epub 2016 Oct 4.

PMID:
27717873
8.

Towards microbiome transplant as a therapy for periodontitis: an exploratory study of periodontitis microbial signature contrasted by oral health, caries and edentulism.

Pozhitkov AE, Leroux BG, Randolph TW, Beikler T, Flemmig TF, Noble PA.

BMC Oral Health. 2015 Oct 14;15:125. doi: 10.1186/s12903-015-0109-4.

9.

Interruption of Electrical Conductivity of Titanium Dental Implants Suggests a Path Towards Elimination Of Corrosion.

Pozhitkov AE, Daubert D, Brochwicz Donimirski A, Goodgion D, Vagin MY, Leroux BG, Hunter CM, Flemmig TF, Noble PA, Bryers JD.

PLoS One. 2015 Oct 13;10(10):e0140393. doi: 10.1371/journal.pone.0140393. eCollection 2015.

10.

Identification of genes involved in taura syndrome virus resistance in litopenaeus vannamei.

Boube I, Lotz JM, Pozhitkov AE, Li S, Griffitt RJ.

J Aquat Anim Health. 2014 Sep;26(3):137-43. doi: 10.1080/08997659.2013.860058.

PMID:
25229483
11.

Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans.

Can I, Javan GT, Pozhitkov AE, Noble PA.

J Microbiol Methods. 2014 Nov;106:1-7. doi: 10.1016/j.mimet.2014.07.026. Epub 2014 Aug 1.

PMID:
25091187
12.

A revised design for microarray experiments to account for experimental noise and uncertainty of probe response.

Pozhitkov AE, Noble PA, Bryk J, Tautz D.

PLoS One. 2014 Mar 11;9(3):e91295. doi: 10.1371/journal.pone.0091295. eCollection 2014.

13.

Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.

Harrison A, Binder H, Buhot A, Burden CJ, Carlon E, Gibas C, Gamble LJ, Halperin A, Hooyberghs J, Kreil DP, Levicky R, Noble PA, Ott A, Pettitt BM, Tautz D, Pozhitkov AE.

Nucleic Acids Res. 2013 Mar 1;41(5):2779-96. doi: 10.1093/nar/gks1358. Epub 2013 Jan 9. Review.

14.

High-throughput methods for analysis of the human oral microbiome.

Pozhitkov AE, Beikler T, Flemmig T, Noble PA.

Periodontol 2000. 2011 Feb;55(1):70-86. doi: 10.1111/j.1600-0757.2010.00380.x. Review. No abstract available.

PMID:
21134229
15.

Scanner calibration revisited.

Pozhitkov AE.

BMC Bioinformatics. 2010 Jul 1;11:361. doi: 10.1186/1471-2105-11-361.

16.

Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities.

Pozhitkov AE, Boube I, Brouwer MH, Noble PA.

Nucleic Acids Res. 2010 Mar;38(5):e28. doi: 10.1093/nar/gkp1122. Epub 2009 Dec 6.

17.

Use of hidden correlations in short oligonucleotide array data are insufficient for accurate quantification of nucleic acid targets in complex target mixtures.

Rule RA, Pozhitkov AE, Noble PA.

J Microbiol Methods. 2009 Feb;76(2):188-95. doi: 10.1016/j.mimet.2008.10.011. Epub 2008 Oct 30.

PMID:
19007823
18.

Simultaneous quantification of multiple nucleic acid targets in complex rRNA mixtures using high density microarrays and nonspecific hybridization as a source of information.

Pozhitkov AE, Nies G, Kleinhenz B, Tautz D, Noble PA.

J Microbiol Methods. 2008 Sep;75(1):92-102. doi: 10.1016/j.mimet.2008.05.013. Epub 2008 May 19.

PMID:
18579240
19.

Concentration dependency of nonequilibrium thermal dissociation curves in complex target samples.

Pozhitkov AE, Rule RA, Stedtfeld RD, Hashsham SA, Noble PA.

J Microbiol Methods. 2008 Aug;74(2-3):82-8. doi: 10.1016/j.mimet.2008.03.010. Epub 2008 Apr 4.

PMID:
18471911
20.

Oligonucleotide microarrays: widely applied--poorly understood.

Pozhitkov AE, Tautz D, Noble PA.

Brief Funct Genomic Proteomic. 2007 Jun;6(2):141-8. Epub 2007 Jul 20. Review.

PMID:
17644526
21.

High variability in melting profiles from gel pad arrays.

Pozhitkov AE, Noble PA.

Environ Microbiol. 2007 Jul;9(7):1865; author reply 1866-7. No abstract available.

PMID:
17564621
22.

Development of a statistically robust quantification method for microorganisms in mixtures using oligonucleotide microarrays.

Pozhitkov AE, Bailey KD, Noble PA.

J Microbiol Methods. 2007 Aug;70(2):292-300. Epub 2007 May 10.

PMID:
17553581
23.
24.

Comment on "Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays".

Pozhitkov AE, Noble PA.

Environ Sci Technol. 2007 Mar 1;41(5):1797-8; author reply 1799-1800. No abstract available.

PMID:
17396676
25.

Effect of high pressure and reversed micelles on the fluorescent proteins.

Verkhusha VV, Pozhitkov AE, Smirnov SA, Borst JW, van Hoek A, Klyachko NL, Levashov AV, Visser AJ.

Biochim Biophys Acta. 2003 Aug 22;1622(3):192-5.

PMID:
12928115
26.
27.

[Kinetic analysis of reaction catalyzed by the phage T7 RNA polymerase].

Pozhitkov AE, Lavrik IN, Sergeev MM, Kochetkov SN.

Mol Biol (Mosk). 1998 Jan-Feb;32(1):93-7. Russian. No abstract available.

PMID:
9566255

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