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Items: 26

1.

Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program.

Chagoyen M, Poyatos JF.

PLoS Comput Biol. 2019 Sep 17;15(9):e1007353. doi: 10.1371/journal.pcbi.1007353. eCollection 2019 Sep.

2.

Deconstructing a multiple antibiotic resistance regulation through the quantification of its input function.

Rodrigo G, Bajić D, Elola I, Poyatos JF.

NPJ Syst Biol Appl. 2017 Oct 6;3:30. doi: 10.1038/s41540-017-0031-2. eCollection 2017.

3.

Eco-evolutionary feedbacks can rescue cooperation in microbial populations.

Moreno-Fenoll C, Cavaliere M, Martínez-García E, Poyatos JF.

Sci Rep. 2017 Feb 13;7:42561. doi: 10.1038/srep42561.

4.

Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli.

Rodrigo G, Bajic D, Elola I, Poyatos JF.

Sci Rep. 2016 Oct 31;6:36196. doi: 10.1038/srep36196.

5.

Genetic Redundancies Enhance Information Transfer in Noisy Regulatory Circuits.

Rodrigo G, Poyatos JF.

PLoS Comput Biol. 2016 Oct 14;12(10):e1005156. doi: 10.1371/journal.pcbi.1005156. eCollection 2016 Oct.

6.

Exploring the Dynamics and Mutational Landscape of Riboregulation with a Minimal Synthetic Circuit in Living Cells.

Rodrigo G, Majer E, Prakash S, Daròs JA, Jaramillo A, Poyatos JF.

Biophys J. 2015 Sep 1;109(5):1070-6. doi: 10.1016/j.bpj.2015.07.021.

7.

Rewiring of genetic networks in response to modification of genetic background.

Bajić D, Moreno-Fenoll C, Poyatos JF.

Genome Biol Evol. 2014 Nov 27;6(12):3267-80. doi: 10.1093/gbe/evu255.

8.

Plasticity facilitates sustainable growth in the commons.

Cavaliere M, Poyatos JF.

J R Soc Interface. 2013 Jan 30;10(81):20121006. doi: 10.1098/rsif.2012.1006. Print 2013 Apr 6.

9.

Balancing noise and plasticity in eukaryotic gene expression.

Bajić D, Poyatos JF.

BMC Genomics. 2012 Jul 27;13:343. doi: 10.1186/1471-2164-13-343.

10.

On the search for design principles in biological systems.

Poyatos JF.

Adv Exp Med Biol. 2012;751:183-93. doi: 10.1007/978-1-4614-3567-9_9.

PMID:
22821459
11.

The balance of weak and strong interactions in genetic networks.

Poyatos JF.

PLoS One. 2011 Feb 10;6(2):e14598. doi: 10.1371/journal.pone.0014598.

12.

Local gene regulation details a recognition code within the LacI transcriptional factor family.

Camas FM, Alm EJ, Poyatos JF.

PLoS Comput Biol. 2010 Nov 11;6(11):e1000989. doi: 10.1371/journal.pcbi.1000989.

13.

Trade-offs and noise tolerance in signal detection by genetic circuits.

Guantes R, Estrada J, Poyatos JF.

PLoS One. 2010 Aug 26;5(8):e12314. doi: 10.1371/journal.pone.0012314. Erratum in: PLoS One. 2010;5(9)doi: 10.1371/annotation/1c817cc7-4fb8-4fd5-a9c6-04b8d0e6c3fb..

14.

Persistent competition among stem cells and their daughters in the Drosophila ovary germline niche.

Rhiner C, Díaz B, Portela M, Poyatos JF, Fernández-Ruiz I, López-Gay JM, Gerlitz O, Moreno E.

Development. 2009 Mar;136(6):995-1006. doi: 10.1242/dev.033340. Epub 2009 Feb 11.

15.

Multistable decision switches for flexible control of epigenetic differentiation.

Guantes R, Poyatos JF.

PLoS Comput Biol. 2008 Nov;4(11):e1000235. doi: 10.1371/journal.pcbi.1000235. Epub 2008 Nov 28.

16.

What determines the assembly of transcriptional network motifs in Escherichia coli?

Camas FM, Poyatos JF.

PLoS One. 2008;3(11):e3657. doi: 10.1371/journal.pone.0003657. Epub 2008 Nov 6.

17.

The determinants of gene order conservation in yeasts.

Poyatos JF, Hurst LD.

Genome Biol. 2007;8(11):R233.

18.

Autogenous and nonautogenous control of response in a genetic network.

Camas FM, Blázquez J, Poyatos JF.

Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12718-23. Epub 2006 Aug 14.

19.

Is optimal gene order impossible?

Poyatos JF, Hurst LD.

Trends Genet. 2006 Aug;22(8):420-3. Epub 2006 Jun 27.

PMID:
16806566
20.

Dynamical principles of two-component genetic oscillators.

Guantes R, Poyatos JF.

PLoS Comput Biol. 2006 Mar;2(3):e30. Epub 2006 Mar 31.

21.

How biologically relevant are interaction-based modules in protein networks?

Poyatos JF, Hurst LD.

Genome Biol. 2004;5(11):R93. Epub 2004 Nov 1.

22.

Non-neutral role of replicative senescence in tissue homeostasis and tumorigenesis.

Poyatos JF, Carnero A.

J Theor Biol. 2004 Oct 7;230(3):333-41.

PMID:
15302543
23.

Quantum Reservoir Engineering with Laser Cooled Trapped Ions.

Poyatos JF, Cirac JI, Zoller P.

Phys Rev Lett. 1996 Dec 2;77(23):4728-4731. No abstract available.

PMID:
10062616
24.

Trapped ions in the strong-excitation regime: Ion interferometry and nonclassical states.

Poyatos JF, Cirac JI, Blatt R, Zoller P.

Phys Rev A. 1996 Aug;54(2):1532-1540. No abstract available.

PMID:
9913623
25.

Motion tomography of a single trapped ion.

Poyatos JF, Walser R, Cirac JI, Zoller P, Blatt R.

Phys Rev A. 1996 Apr;53(4):R1966-R1969. No abstract available.

PMID:
9913226
26.

Generation of sub-Poissonian and squeezed fields in the thermal superposition Jaynes-Cummings model.

Kozierowski M, Poyatos JF, Sánchez-Soto LL.

Phys Rev A. 1995 Mar;51(3):2450-2458. No abstract available.

PMID:
9911862

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