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Items: 17

1.

Recovering Wind-Induced Plant Motion in Dense Field Environments via Deep Learning and Multiple Object Tracking.

Gibbs JA, Burgess AJ, Pound MP, Pridmore TP, Murchie EH.

Plant Physiol. 2019 Sep;181(1):28-42. doi: 10.1104/pp.19.00141. Epub 2019 Jul 22.

2.

Erratum to: Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.

Pound MP, Atkinson JA, Townsend AJ, Wilson MH, Griffiths M, Jackson AS, Bulat A, Tzimiropoulos G, Wells DM, Murchie EH, Pridmore TP, French AP.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy042. No abstract available.

3.

Uncovering the hidden half of plants using new advances in root phenotyping.

Atkinson JA, Pound MP, Bennett MJ, Wells DM.

Curr Opin Biotechnol. 2019 Feb;55:1-8. doi: 10.1016/j.copbio.2018.06.002. Epub 2018 Jul 19. Review.

4.

Deep machine learning provides state-of-the-art performance in image-based plant phenotyping.

Pound MP, Atkinson JA, Townsend AJ, Wilson MH, Griffiths M, Jackson AS, Bulat A, Tzimiropoulos G, Wells DM, Murchie EH, Pridmore TP, French AP.

Gigascience. 2017 Oct 1;6(10):1-10. doi: 10.1093/gigascience/gix083. Erratum in: Gigascience. 2018 Jul 1;7(7):.

5.

AutoRoot: open-source software employing a novel image analysis approach to support fully-automated plant phenotyping.

Pound MP, Fozard S, Torres Torres M, Forde BG, French AP.

Plant Methods. 2017 Mar 8;13:12. doi: 10.1186/s13007-017-0161-y. eCollection 2017.

6.

The Microphenotron: a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology.

Burrell T, Fozard S, Holroyd GH, French AP, Pound MP, Bigley CJ, James Taylor C, Forde BG.

Plant Methods. 2017 Mar 1;13:10. doi: 10.1186/s13007-017-0158-6. eCollection 2017.

7.

Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems.

Burgess AJ, Retkute R, Pound MP, Mayes S, Murchie EH.

Ann Bot. 2017 Mar 1;119(4):517-532. doi: 10.1093/aob/mcw242.

8.

The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis.

Burgess AJ, Retkute R, Preston SP, Jensen OE, Pound MP, Pridmore TP, Murchie EH.

Front Plant Sci. 2016 Sep 21;7:1392. eCollection 2016.

9.

High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field.

Burgess AJ, Retkute R, Pound MP, Foulkes J, Preston SP, Jensen OE, Pridmore TP, Murchie EH.

Plant Physiol. 2015 Oct;169(2):1192-204. doi: 10.1104/pp.15.00722. Epub 2015 Aug 17.

10.

Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat.

Atkinson JA, Wingen LU, Griffiths M, Pound MP, Gaju O, Foulkes MJ, Le Gouis J, Griffiths S, Bennett MJ, King J, Wells DM.

J Exp Bot. 2015 Apr;66(8):2283-92. doi: 10.1093/jxb/erv006. Epub 2015 Mar 4.

11.

Root system markup language: toward a unified root architecture description language.

Lobet G, Pound MP, Diener J, Pradal C, Draye X, Godin C, Javaux M, Leitner D, Meunier F, Nacry P, Pridmore TP, Schnepf A.

Plant Physiol. 2015 Mar;167(3):617-27. doi: 10.1104/pp.114.253625. Epub 2015 Jan 22.

12.

Automated recovery of three-dimensional models of plant shoots from multiple color images.

Pound MP, French AP, Murchie EH, Pridmore TP.

Plant Physiol. 2014 Dec;166(4):1688-98. doi: 10.1104/pp.114.248971. Epub 2014 Oct 20.

13.

Systems analysis of auxin transport in the Arabidopsis root apex.

Band LR, Wells DM, Fozard JA, Ghetiu T, French AP, Pound MP, Wilson MH, Yu L, Li W, Hijazi HI, Oh J, Pearce SP, Perez-Amador MA, Yun J, Kramer E, Alonso JM, Godin C, Vernoux T, Hodgman TC, Pridmore TP, Swarup R, King JR, Bennett MJ.

Plant Cell. 2014 Mar;26(3):862-75. doi: 10.1105/tpc.113.119495. Epub 2014 Mar 14.

14.

Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots.

Muraro D, Mellor N, Pound MP, Help H, Lucas M, Chopard J, Byrne HM, Godin C, Hodgman TC, King JR, Pridmore TP, Helariutta Y, Bennett MJ, Bishopp A.

Proc Natl Acad Sci U S A. 2014 Jan 14;111(2):857-62. doi: 10.1073/pnas.1221766111. Epub 2013 Dec 31.

15.

RootNav: navigating images of complex root architectures.

Pound MP, French AP, Atkinson JA, Wells DM, Bennett MJ, Pridmore T.

Plant Physiol. 2013 Aug;162(4):1802-14. doi: 10.1104/pp.113.221531. Epub 2013 Jun 13.

16.

What lies beneath: underlying assumptions in bioimage analysis.

Pridmore TP, French AP, Pound MP.

Trends Plant Sci. 2012 Dec;17(12):688-92. doi: 10.1016/j.tplants.2012.07.003. Epub 2012 Aug 17. Review.

PMID:
22902890
17.

CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images.

Pound MP, French AP, Wells DM, Bennett MJ, Pridmore TP.

Plant Cell. 2012 Apr;24(4):1353-61. doi: 10.1105/tpc.112.096289. Epub 2012 Apr 3.

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