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Items: 18

1.

Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems.

Sieracki ME, Poulton NJ, Jaillon O, Wincker P, de Vargas C, Rubinat-Ripoll L, Stepanauskas R, Logares R, Massana R.

Sci Rep. 2019 Apr 15;9(1):6025. doi: 10.1038/s41598-019-42487-1.

2.

Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site.

Nagarkar M, Countway PD, Du Yoo Y, Daniels E, Poulton NJ, Palenik B.

ISME J. 2018 Sep;12(9):2278-2291. doi: 10.1038/s41396-018-0172-3. Epub 2018 Jun 13.

3.

Author Correction: Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Dec 12;8(1):2134. doi: 10.1038/s41467-017-02128-5.

4.

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Jul 20;8(1):84. doi: 10.1038/s41467-017-00128-z. Erratum in: Nat Commun. 2017 Dec 12;8(1):2134.

5.

Genomic exploration of individual giant ocean viruses.

Wilson WH, Gilg IC, Moniruzzaman M, Field EK, Koren S, LeCleir GR, Martínez Martínez J, Poulton NJ, Swan BK, Stepanauskas R, Wilhelm SW.

ISME J. 2017 Aug;11(8):1736-1745. doi: 10.1038/ismej.2017.61. Epub 2017 May 12.

6.

FlowCam: Quantification and Classification of Phytoplankton by Imaging Flow Cytometry.

Poulton NJ.

Methods Mol Biol. 2016;1389:237-47. doi: 10.1007/978-1-4939-3302-0_17.

PMID:
27460250
7.

Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus.

Martin P, Dyhrman ST, Lomas MW, Poulton NJ, Van Mooy BA.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8089-94. doi: 10.1073/pnas.1321719111. Epub 2014 Apr 21.

8.

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.

Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R.

PLoS One. 2014 Apr 17;9(4):e95380. doi: 10.1371/journal.pone.0095380. eCollection 2014.

9.

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.

Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, Moran MA, Hallam SJ, Cavicchioli R, Woyke T, Stepanauskas R.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11463-8. doi: 10.1073/pnas.1304246110. Epub 2013 Jun 25.

10.

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PS, Reitenga KG, Xie G, Poulton NJ, Lluesma Gomez M, Masland DE, Thompson B, Bellows WK, Ziervogel K, Lo CC, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R.

PLoS One. 2012;7(4):e35314. doi: 10.1371/journal.pone.0035314. Epub 2012 Apr 20.

11.

Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis.

Bhattacharya D, Price DC, Yoon HS, Yang EC, Poulton NJ, Andersen RA, Das SP.

Sci Rep. 2012;2:356. doi: 10.1038/srep00356. Epub 2012 Apr 10.

12.

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing.

Martinez-Garcia M, Brazel D, Poulton NJ, Swan BK, Gomez ML, Masland D, Sieracki ME, Stepanauskas R.

ISME J. 2012 Mar;6(3):703-7. doi: 10.1038/ismej.2011.126. Epub 2011 Sep 22.

13.

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland ED, Gomez ML, Sieracki ME, DeLong EF, Herndl GJ, Stepanauskas R.

Science. 2011 Sep 2;333(6047):1296-300. doi: 10.1126/science.1203690.

14.

Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi.

Martínez Martínez J, Poulton NJ, Stepanauskas R, Sieracki ME, Wilson WH.

PLoS One. 2011;6(7):e22520. doi: 10.1371/journal.pone.0022520. Epub 2011 Jul 26.

15.

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

Martinez-Garcia M, Swan BK, Poulton NJ, Gomez ML, Masland D, Sieracki ME, Stepanauskas R.

ISME J. 2012 Jan;6(1):113-23. doi: 10.1038/ismej.2011.84. Epub 2011 Jun 30.

16.

What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH.

Fleming EJ, Langdon AE, Martinez-Garcia M, Stepanauskas R, Poulton NJ, Masland ED, Emerson D.

PLoS One. 2011 Mar 17;6(3):e17769. doi: 10.1371/journal.pone.0017769.

17.

Capturing diversity of marine heterotrophic protists: one cell at a time.

Heywood JL, Sieracki ME, Bellows W, Poulton NJ, Stepanauskas R.

ISME J. 2011 Apr;5(4):674-84. doi: 10.1038/ismej.2010.155. Epub 2010 Oct 21.

18.

Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton.

Jasti S, Sieracki ME, Poulton NJ, Giewat MW, Rooney-Varga JN.

Appl Environ Microbiol. 2005 Jul;71(7):3483-94.

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