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Items: 30

1.

Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes.

Benites LF, Poulton N, Labadie K, Sieracki ME, Grimsley N, Piganeau G.

Philos Trans R Soc Lond B Biol Sci. 2019 Nov 25;374(1786):20190089. doi: 10.1098/rstb.2019.0089. Epub 2019 Oct 7.

PMID:
31587637
2.

Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems.

Sieracki ME, Poulton NJ, Jaillon O, Wincker P, de Vargas C, Rubinat-Ripoll L, Stepanauskas R, Logares R, Massana R.

Sci Rep. 2019 Apr 15;9(1):6025. doi: 10.1038/s41598-019-42487-1.

3.

Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site.

Nagarkar M, Countway PD, Du Yoo Y, Daniels E, Poulton NJ, Palenik B.

ISME J. 2018 Sep;12(9):2278-2291. doi: 10.1038/s41396-018-0172-3. Epub 2018 Jun 13.

4.

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.

Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators, Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P.

Nat Commun. 2018 Jan 22;9(1):310. doi: 10.1038/s41467-017-02235-3.

5.

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla.

Becraft ED, Woyke T, Jarett J, Ivanova N, Godoy-Vitorino F, Poulton N, Brown JM, Brown J, Lau MCY, Onstott T, Eisen JA, Moser D, Stepanauskas R.

Front Microbiol. 2017 Nov 28;8:2264. doi: 10.3389/fmicb.2017.02264. eCollection 2017.

6.

Author Correction: Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Dec 12;8(1):2134. doi: 10.1038/s41467-017-02128-5.

7.

Pandemic 2009 H1N1 Influenza Venus reporter virus reveals broad diversity of MHC class II-positive antigen-bearing cells following infection in vivo.

DiPiazza A, Nogales A, Poulton N, Wilson PC, Martínez-Sobrido L, Sant AJ.

Sci Rep. 2017 Sep 7;7(1):10857. doi: 10.1038/s41598-017-11313-x.

8.

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

Alberti A, Poulain J, Engelen S, Labadie K, Romac S, Ferrera I, Albini G, Aury JM, Belser C, Bertrand A, Cruaud C, Da Silva C, Dossat C, Gavory F, Gas S, Guy J, Haquelle M, Jacoby E, Jaillon O, Lemainque A, Pelletier E, Samson G, Wessner M; Genoscope Technical Team, Acinas SG, Royo-Llonch M, Cornejo-Castillo FM, Logares R, Fernández-Gómez B, Bowler C, Cochrane G, Amid C, Hoopen PT, De Vargas C, Grimsley N, Desgranges E, Kandels-Lewis S, Ogata H, Poulton N, Sieracki ME, Stepanauskas R, Sullivan MB, Brum JR, Duhaime MB, Poulos BT, Hurwitz BL; Tara Oceans Consortium Coordinators, Pesant S, Karsenti E, Wincker P.

Sci Data. 2017 Aug 1;4:170093. doi: 10.1038/sdata.2017.93.

9.

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

Stepanauskas R, Fergusson EA, Brown J, Poulton NJ, Tupper B, Labonté JM, Becraft ED, Brown JM, Pachiadaki MG, Povilaitis T, Thompson BP, Mascena CJ, Bellows WK, Lubys A.

Nat Commun. 2017 Jul 20;8(1):84. doi: 10.1038/s41467-017-00128-z. Erratum in: Nat Commun. 2017 Dec 12;8(1):2134.

10.

Genomic exploration of individual giant ocean viruses.

Wilson WH, Gilg IC, Moniruzzaman M, Field EK, Koren S, LeCleir GR, Martínez Martínez J, Poulton NJ, Swan BK, Stepanauskas R, Wilhelm SW.

ISME J. 2017 Aug;11(8):1736-1745. doi: 10.1038/ismej.2017.61. Epub 2017 May 12.

11.

Avian and Human Seasonal Influenza Hemagglutinin Proteins Elicit CD4 T Cell Responses That Are Comparable in Epitope Abundance and Diversity.

DiPiazza A, Richards K, Poulton N, Sant AJ.

Clin Vaccine Immunol. 2017 Mar 6;24(3). pii: e00548-16. doi: 10.1128/CVI.00548-16. Print 2017 Mar.

12.

Characterizing the phytoplankton soup: pump and plumbing effects on the particle assemblage in underway optical seawater systems.

Cetinić I, Poulton N, Slade WH.

Opt Express. 2016 Sep 5;24(18):20703-15. doi: 10.1364/OE.24.020703.

PMID:
27607674
13.

FlowCam: Quantification and Classification of Phytoplankton by Imaging Flow Cytometry.

Poulton NJ.

Methods Mol Biol. 2016;1389:237-47. doi: 10.1007/978-1-4939-3302-0_17.

PMID:
27460250
14.

Imaging flow cytometry for phytoplankton analysis.

Dashkova V, Malashenkov D, Poulton N, Vorobjev I, Barteneva NS.

Methods. 2017 Jan 1;112:188-200. doi: 10.1016/j.ymeth.2016.05.007. Epub 2016 May 17. Review.

PMID:
27223402
15.

The ocean sampling day consortium.

Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Caçador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, Löscher CR, Kremp A, DeLorenzo ME, Øvreås L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalhães C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, Van De Kamp J, Frampton DM, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid el H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, Ten Hoopen P, Cochrane G, L'Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, Dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JA, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PA, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, El Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, Glöckner FO.

Gigascience. 2015 Jun 19;4:27. doi: 10.1186/s13742-015-0066-5. eCollection 2015.

16.

Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus.

Martin P, Dyhrman ST, Lomas MW, Poulton NJ, Van Mooy BA.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8089-94. doi: 10.1073/pnas.1321719111. Epub 2014 Apr 21.

17.

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.

Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R.

PLoS One. 2014 Apr 17;9(4):e95380. doi: 10.1371/journal.pone.0095380. eCollection 2014.

18.

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics.

Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Dmitrieff E, Malmstrom R, Stepanauskas R, Woyke T.

Nat Protoc. 2014 May;9(5):1038-48. doi: 10.1038/nprot.2014.067. Epub 2014 Apr 10.

PMID:
24722403
19.

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.

Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, Moran MA, Hallam SJ, Cavicchioli R, Woyke T, Stepanauskas R.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11463-8. doi: 10.1073/pnas.1304246110. Epub 2013 Jun 25.

20.

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

Martinez-Garcia M, Brazel DM, Swan BK, Arnosti C, Chain PS, Reitenga KG, Xie G, Poulton NJ, Lluesma Gomez M, Masland DE, Thompson B, Bellows WK, Ziervogel K, Lo CC, Ahmed S, Gleasner CD, Detter CJ, Stepanauskas R.

PLoS One. 2012;7(4):e35314. doi: 10.1371/journal.pone.0035314. Epub 2012 Apr 20.

21.

Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis.

Bhattacharya D, Price DC, Yoon HS, Yang EC, Poulton NJ, Andersen RA, Das SP.

Sci Rep. 2012;2:356. doi: 10.1038/srep00356. Epub 2012 Apr 10.

22.

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing.

Martinez-Garcia M, Brazel D, Poulton NJ, Swan BK, Gomez ML, Masland D, Sieracki ME, Stepanauskas R.

ISME J. 2012 Mar;6(3):703-7. doi: 10.1038/ismej.2011.126. Epub 2011 Sep 22.

23.

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland ED, Gomez ML, Sieracki ME, DeLong EF, Herndl GJ, Stepanauskas R.

Science. 2011 Sep 2;333(6047):1296-300. doi: 10.1126/science.1203690.

24.

Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi.

Martínez Martínez J, Poulton NJ, Stepanauskas R, Sieracki ME, Wilson WH.

PLoS One. 2011;6(7):e22520. doi: 10.1371/journal.pone.0022520. Epub 2011 Jul 26.

25.

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

Martinez-Garcia M, Swan BK, Poulton NJ, Gomez ML, Masland D, Sieracki ME, Stepanauskas R.

ISME J. 2012 Jan;6(1):113-23. doi: 10.1038/ismej.2011.84. Epub 2011 Jun 30.

26.

What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH.

Fleming EJ, Langdon AE, Martinez-Garcia M, Stepanauskas R, Poulton NJ, Masland ED, Emerson D.

PLoS One. 2011 Mar 17;6(3):e17769. doi: 10.1371/journal.pone.0017769.

27.

Capturing diversity of marine heterotrophic protists: one cell at a time.

Heywood JL, Sieracki ME, Bellows W, Poulton NJ, Stepanauskas R.

ISME J. 2011 Apr;5(4):674-84. doi: 10.1038/ismej.2010.155. Epub 2010 Oct 21.

28.

Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton.

Jasti S, Sieracki ME, Poulton NJ, Giewat MW, Rooney-Varga JN.

Appl Environ Microbiol. 2005 Jul;71(7):3483-94.

29.
30.

ATP dependence of the SNARE/caveolin 1 interaction in the hippocampus.

Magga JM, Kay JG, Davy A, Poulton NP, Robbins SM, Braun JE.

Biochem Biophys Res Commun. 2002 Mar 15;291(5):1232-8.

PMID:
11883949

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