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Items: 13

1.

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry.

Potthast F, Gerrits B, Häkkinen J, Rutishauser D, Ahrens CH, Roschitzki B, Baerenfaller K, Munton RP, Walther P, Gehrig P, Seif P, Seeberger PH, Schlapbach R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jul 1;854(1-2):173-82. Epub 2007 Apr 25.

PMID:
17513179
2.

A high-quality catalog of the Drosophila melanogaster proteome.

Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, Krijgsveld J, Kregenow F, Heck AJ, Hafen E, Schlapbach R, Aebersold R.

Nat Biotechnol. 2007 May;25(5):576-83. Epub 2007 Apr 22.

PMID:
17450130
3.

Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations.

Munton RP, Tweedie-Cullen R, Livingstone-Zatchej M, Weinandy F, Waidelich M, Longo D, Gehrig P, Potthast F, Rutishauser D, Gerrits B, Panse C, Schlapbach R, Mansuy IM.

Mol Cell Proteomics. 2007 Feb;6(2):283-93. Epub 2006 Nov 17.

4.

Towards the proteome of Burkholderia cenocepacia H111: setting up a 2-DE reference map.

Riedel K, Carranza P, Gehrig P, Potthast F, Eberl L.

Proteomics. 2006 Jan;6(1):207-16.

PMID:
16294309
5.

Further steps in standardisation. Report of the second annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005).

Orchard S, Hermjakob H, Taylor CF, Potthast F, Jones P, Zhu W, Julian RK Jr, Apweiler R.

Proteomics. 2005 Sep;5(14):3552-5.

PMID:
16167370
6.

Second proteomics standards initiative spring workshop.

Orchard S, Hermjakob H, Taylor CF, Potthast F, Jones P, Zhu W, Julian RK Jr, Apweiler R.

Expert Rev Proteomics. 2005 Jun;2(3):287-9. No abstract available.

PMID:
16000075
7.

Identification and relative quantification of membrane proteins by surface biotinylation and two-dimensional peptide mapping.

Scheurer SB, Rybak JN, Roesli C, Brunisholz RA, Potthast F, Schlapbach R, Neri D, Elia G.

Proteomics. 2005 Jul;5(11):2718-28.

PMID:
15986331
8.

Database independent detection of isotopically labeled MS/MS spectrum peptide pairs.

Potthast F, Ocenasek J, Rutishauser D, Pelikan M, Schlapbach R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Mar 25;817(2):225-30.

PMID:
15686989
9.

Improving automatic peptide mass fingerprint protein identification by combining many peak sets.

Rögnvaldsson T, Häkkinen J, Lindberg C, Marko-Varga G, Potthast F, Samuelsson J.

J Chromatogr B Analyt Technol Biomed Life Sci. 2004 Aug 5;807(2):209-15.

PMID:
15203031
10.

Thiourea enhances mapping of the proteome from murine white adipose tissue.

Lanne B, Potthast F, Höglund A, Brockenhuus von Löwenhielm H, Nyström AC, Nilsson F, Dahllöf B.

Proteomics. 2001 Jul;1(7):819-28.

PMID:
11503206
11.

Design of sequences with good folding properties in coarse-grained protein models.

Irbäck A, Peterson C, Potthast F, Sandelin E.

Structure. 1999 Mar 15;7(3):347-60.

12.

Binary assignments of amino acids from pattern conservation.

Irbäck A, Potthast F.

Protein Eng. 1997 Sep;10(9):1013-7.

PMID:
9464565
13.

Evidence for nonrandom hydrophobicity structures in protein chains.

Irbäck A, Peterson C, Potthast F.

Proc Natl Acad Sci U S A. 1996 Sep 3;93(18):9533-8.

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