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Items: 1 to 50 of 142

1.

Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse.

Zhang L, He X, Liu X, Zhang F, Huang LF, Potter AS, Xu L, Zhou W, Zheng T, Luo Z, Berry KP, Pribnow A, Smith SM, Fuller C, Jones BV, Fouladi M, Drissi R, Yang ZJ, Gustafson WC, Remke M, Pomeroy SL, Girard EJ, Olson JM, Morrissy AS, Vladoiu MC, Zhang J, Tian W, Xin M, Taylor MD, Potter SS, Roussel MF, Weiss WA, Lu QR.

Cancer Cell. 2019 Aug 14. pii: S1535-6108(19)30336-8. doi: 10.1016/j.ccell.2019.07.009. [Epub ahead of print]

PMID:
31474569
2.

A bigenic mouse model of FSGS reveals perturbed pathways in podocytes, mesangial cells and endothelial cells.

Potter AS, Drake K, Brunskill EW, Potter SS.

PLoS One. 2019 Aug 28;14(8):e0216261. doi: 10.1371/journal.pone.0216261. eCollection 2019.

3.

Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis.

Weng Q, Wang J, Wang J, He D, Cheng Z, Zhang F, Verma R, Xu L, Dong X, Liao Y, He X, Potter A, Zhang L, Zhao C, Xin M, Zhou Q, Aronow BJ, Blackshear PJ, Rich JN, He Q, Zhou W, Suvà ML, Waclaw RR, Potter SS, Yu G, Lu QR.

Cell Stem Cell. 2019 May 2;24(5):707-723.e8. doi: 10.1016/j.stem.2019.03.006. Epub 2019 Apr 11.

PMID:
30982771
4.

Integrating gene regulatory pathways into differential network analysis of gene expression data.

Grimes T, Potter SS, Datta S.

Sci Rep. 2019 Apr 2;9(1):5479. doi: 10.1038/s41598-019-41918-3.

5.

The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.

Taylor DM, Aronow BJ, Tan K, Bernt K, Salomonis N, Greene CS, Frolova A, Henrickson SE, Wells A, Pei L, Jaiswal JK, Whitsett J, Hamilton KE, MacParland SA, Kelsen J, Heuckeroth RO, Potter SS, Vella LA, Terry NA, Ghanem LR, Kennedy BC, Helbig I, Sullivan KE, Castelo-Soccio L, Kreigstein A, Herse F, Nawijn MC, Koppelman GH, Haendel M, Harris NL, Rokita JL, Zhang Y, Regev A, Rozenblatt-Rosen O, Rood JE, Tickle TL, Vento-Tormo R, Alimohamed S, Lek M, Mar JC, Loomes KM, Barrett DM, Uapinyoying P, Beggs AH, Agrawal PB, Chen YW, Muir AB, Garmire LX, Snapper SB, Nazarian J, Seeholzer SH, Fazelinia H, Singh LN, Faryabi RB, Raman P, Dawany N, Xie HM, Devkota B, Diskin SJ, Anderson SA, Rappaport EF, Peranteau W, Wikenheiser-Brokamp KA, Teichmann S, Wallace D, Peng T, Ding YY, Kim MS, Xing Y, Kong SW, Bönnemann CG, Mandl KD, White PS.

Dev Cell. 2019 Apr 8;49(1):10-29. doi: 10.1016/j.devcel.2019.03.001. Epub 2019 Mar 28. Review.

6.

Single cell RNA-seq study of wild type and Hox9,10,11 mutant developing uterus.

Mucenski ML, Mahoney R, Adam M, Potter AS, Potter SS.

Sci Rep. 2019 Mar 14;9(1):4557. doi: 10.1038/s41598-019-40923-w.

7.

Maturation of heart valve cell populations during postnatal remodeling.

Hulin A, Hortells L, Gomez-Stallons MV, O'Donnell A, Chetal K, Adam M, Lancellotti P, Oury C, Potter SS, Salomonis N, Yutzey KE.

Development. 2019 Mar 12;146(12). pii: dev173047. doi: 10.1242/dev.173047.

8.

Single cell RNA analysis identifies cellular heterogeneity and adaptive responses of the lung at birth.

Guo M, Du Y, Gokey JJ, Ray S, Bell SM, Adam M, Sudha P, Perl AK, Deshmukh H, Potter SS, Whitsett JA, Xu Y.

Nat Commun. 2019 Jan 3;10(1):37. doi: 10.1038/s41467-018-07770-1.

9.

Hnf4a deletion in the mouse kidney phenocopies Fanconi renotubular syndrome.

Marable SS, Chung E, Adam M, Potter SS, Park JS.

JCI Insight. 2018 Jul 26;3(14). pii: 97497. doi: 10.1172/jci.insight.97497. eCollection 2018 Jul 26.

10.

Single-cell RNA sequencing for the study of development, physiology and disease.

Potter SS.

Nat Rev Nephrol. 2018 Aug;14(8):479-492. doi: 10.1038/s41581-018-0021-7. Review.

11.

Disruption of Hox9,10,11 function results in cellular level lineage infidelity in the kidney.

Drake KA, Adam M, Mahoney R, Potter SS.

Sci Rep. 2018 Apr 20;8(1):6306. doi: 10.1038/s41598-018-24782-5.

12.

Reduced Abd-B Hox function during kidney development results in lineage infidelity.

Magella B, Mahoney R, Adam M, Potter SS.

Dev Biol. 2018 Jun 15;438(2):84-93. doi: 10.1016/j.ydbio.2018.03.020. Epub 2018 Mar 26.

13.

Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf.

Magella B, Adam M, Potter AS, Venkatasubramanian M, Chetal K, Hay SB, Salomonis N, Potter SS.

Dev Biol. 2018 Feb 1;434(1):36-47. doi: 10.1016/j.ydbio.2017.11.006. Epub 2017 Nov 26.

14.

Activated Hedgehog-GLI Signaling Causes Congenital Ureteropelvic Junction Obstruction.

Sheybani-Deloui S, Chi L, Staite MV, Cain JE, Nieman BJ, Henkelman RM, Wainwright BJ, Potter SS, Bagli DJ, Lorenzo AJ, Rosenblum ND.

J Am Soc Nephrol. 2018 Feb;29(2):532-544. doi: 10.1681/ASN.2017050482. Epub 2017 Nov 6.

15.

Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development.

Adam M, Potter AS, Potter SS.

Development. 2017 Oct 1;144(19):3625-3632. doi: 10.1242/dev.151142. Epub 2017 Aug 29.

16.

LungMAP: The Molecular Atlas of Lung Development Program.

Ardini-Poleske ME, Clark RF, Ansong C, Carson JP, Corley RA, Deutsch GH, Hagood JS, Kaminski N, Mariani TJ, Potter SS, Pryhuber GS, Warburton D, Whitsett JA, Palmer SM, Ambalavanan N; LungMAP Consortium.

Am J Physiol Lung Cell Mol Physiol. 2017 Nov 1;313(5):L733-L740. doi: 10.1152/ajplung.00139.2017. Epub 2017 Aug 10. Review.

17.

Repression of Interstitial Identity in Nephron Progenitor Cells by Pax2 Establishes the Nephron-Interstitium Boundary during Kidney Development.

Naiman N, Fujioka K, Fujino M, Valerius MT, Potter SS, McMahon AP, Kobayashi A.

Dev Cell. 2017 May 22;41(4):349-365.e3. doi: 10.1016/j.devcel.2017.04.022.

18.

Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development.

Du Y, Kitzmiller JA, Sridharan A, Perl AK, Bridges JP, Misra RS, Pryhuber GS, Mariani TJ, Bhattacharya S, Guo M, Potter SS, Dexheimer P, Aronow B, Jobe AH, Whitsett JA, Xu Y.

Thorax. 2017 May;72(5):481-484. doi: 10.1136/thoraxjnl-2016-209598. Epub 2017 Jan 9.

19.

Uterine inactivation of muscle segment homeobox (Msx) genes alters epithelial cell junction proteins during embryo implantation.

Sun X, Park CB, Deng W, Potter SS, Dey SK.

FASEB J. 2016 Apr;30(4):1425-35. doi: 10.1096/fj.15-282798. Epub 2015 Dec 14.

20.

Defects in the Fanconi Anemia Pathway in Head and Neck Cancer Cells Stimulate Tumor Cell Invasion through DNA-PK and Rac1 Signaling.

Romick-Rosendale LE, Hoskins EE, Privette Vinnedge LM, Foglesong GD, Brusadelli MG, Potter SS, Komurov K, Brugmann SA, Lambert PF, Kimple RJ, Virts EL, Hanenberg H, Gillison ML, Wells SI.

Clin Cancer Res. 2016 Apr 15;22(8):2062-73. doi: 10.1158/1078-0432.CCR-15-2209. Epub 2015 Nov 24.

21.

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis.

Guo M, Wang H, Potter SS, Whitsett JA, Xu Y.

PLoS Comput Biol. 2015 Nov 24;11(11):e1004575. doi: 10.1371/journal.pcbi.1004575. eCollection 2015 Nov.

22.

Intrinsic Age-Dependent Changes and Cell-Cell Contacts Regulate Nephron Progenitor Lifespan.

Chen S, Brunskill EW, Potter SS, Dexheimer PJ, Salomonis N, Aronow BJ, Hong CI, Zhang T, Kopan R.

Dev Cell. 2015 Oct 12;35(1):49-62. doi: 10.1016/j.devcel.2015.09.009.

23.

Key pathways regulated by HoxA9,10,11/HoxD9,10,11 during limb development.

Raines AM, Magella B, Adam M, Potter SS.

BMC Dev Biol. 2015 Jul 19;15:28. doi: 10.1186/s12861-015-0078-5.

24.

Molecular Anatomy of Palate Development.

Potter AS, Potter SS.

PLoS One. 2015 Jul 13;10(7):e0132662. doi: 10.1371/journal.pone.0132662. eCollection 2015.

25.
26.

Single cell dissection of early kidney development: multilineage priming.

Brunskill EW, Park JS, Chung E, Chen F, Magella B, Potter SS.

Development. 2014 Aug;141(15):3093-101. doi: 10.1242/dev.110601.

27.

A gene expression atlas of early craniofacial development.

Brunskill EW, Potter AS, Distasio A, Dexheimer P, Plassard A, Aronow BJ, Potter SS.

Dev Biol. 2014 Jul 15;391(2):133-46. doi: 10.1016/j.ydbio.2014.04.016. Epub 2014 Apr 26.

28.

Building an atlas of gene expression driving kidney development: pushing the limits of resolution.

Potter SS, Brunskill EW.

Pediatr Nephrol. 2014 Apr;29(4):581-8. doi: 10.1007/s00467-013-2602-9. Epub 2013 Sep 1. Review.

PMID:
23996451
29.

Overexpression of vascular endothelial growth factor in the germinal matrix induces neurovascular proteases and intraventricular hemorrhage.

Yang D, Baumann JM, Sun YY, Tang M, Dunn RS, Akeson AL, Kernie SG, Kallapur S, Lindquist DM, Huang EJ, Potter SS, Liang HC, Kuan CY.

Sci Transl Med. 2013 Jul 10;5(193):193ra90. doi: 10.1126/scitranslmed.3005794.

30.

Recombineering-based dissection of flanking and paralogous Hox gene functions in mouse reproductive tracts.

Raines AM, Adam M, Magella B, Meyer SE, Grimes HL, Dey SK, Potter SS.

Development. 2013 Jul;140(14):2942-52. doi: 10.1242/dev.092569. Epub 2013 Jun 12.

31.

Changes in the gene expression programs of renal mesangial cells during diabetic nephropathy.

Brunskill EW, Potter SS.

BMC Nephrol. 2012 Jul 28;13:70. doi: 10.1186/1471-2369-13-70.

32.

RNA-Seq defines novel genes, RNA processing patterns and enhancer maps for the early stages of nephrogenesis: Hox supergenes.

Brunskill EW, Potter SS.

Dev Biol. 2012 Aug 1;368(1):4-17. doi: 10.1016/j.ydbio.2012.05.030. Epub 2012 Jun 1.

33.

Laser capture.

Potter SS, Brunskill EW.

Methods Mol Biol. 2012;886:211-21. doi: 10.1007/978-1-61779-851-1_19.

34.

Genes that confer the identity of the renin cell.

Brunskill EW, Sequeira-Lopez ML, Pentz ES, Lin E, Yu J, Aronow BJ, Potter SS, Gomez RA.

J Am Soc Nephrol. 2011 Dec;22(12):2213-25. doi: 10.1681/ASN.2011040401. Epub 2011 Oct 27. Erratum in: J Am Soc Nephrol. 2012 Mar;23(3):567.

35.

Defining the molecular character of the developing and adult kidney podocyte.

Brunskill EW, Georgas K, Rumballe B, Little MH, Potter SS.

PLoS One. 2011;6(9):e24640. doi: 10.1371/journal.pone.0024640. Epub 2011 Sep 8.

36.

The GUDMAP database--an online resource for genitourinary research.

Harding SD, Armit C, Armstrong J, Brennan J, Cheng Y, Haggarty B, Houghton D, Lloyd-MacGilp S, Pi X, Roochun Y, Sharghi M, Tindal C, McMahon AP, Gottesman B, Little MH, Georgas K, Aronow BJ, Potter SS, Brunskill EW, Southard-Smith EM, Mendelsohn C, Baldock RA, Davies JA, Davidson D.

Development. 2011 Jul;138(13):2845-53. doi: 10.1242/dev.063594.

37.

Microarrays and RNA-Seq identify molecular mechanisms driving the end of nephron production.

Brunskill EW, Lai HL, Jamison DC, Potter SS, Patterson LT.

BMC Dev Biol. 2011 Mar 12;11:15. doi: 10.1186/1471-213X-11-15.

38.

Defining the genetic blueprint of kidney development.

Potter SS, Brunskill EW, Patterson LT.

Pediatr Nephrol. 2011 Sep;26(9):1469-78. doi: 10.1007/s00467-011-1807-z. Epub 2011 Feb 19. Review.

PMID:
21336810
39.

Microdissection of the gene expression codes driving nephrogenesis.

Potter SS, Brunskill EW, Patterson LT.

Organogenesis. 2010 Oct-Dec;6(4):263-9. doi: 10.4161/org.6.4.12682.

40.

Gene expression programs of mouse endothelial cells in kidney development and disease.

Brunskill EW, Potter SS.

PLoS One. 2010 Aug 10;5(8):e12034. doi: 10.1371/journal.pone.0012034.

41.

Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment.

Georgas K, Rumballe B, Valerius MT, Chiu HS, Thiagarajan RD, Lesieur E, Aronow BJ, Brunskill EW, Combes AN, Tang D, Taylor D, Grimmond SM, Potter SS, McMahon AP, Little MH.

Dev Biol. 2009 Aug 15;332(2):273-86. doi: 10.1016/j.ydbio.2009.05.578. Epub 2009 Jun 6.

42.

Atlas of gene expression in the developing kidney at microanatomic resolution.

Brunskill EW, Aronow BJ, Georgas K, Rumballe B, Valerius MT, Aronow J, Kaimal V, Jegga AG, Yu J, Grimmond S, McMahon AP, Patterson LT, Little MH, Potter SS.

Dev Cell. 2008 Nov;15(5):781-91. doi: 10.1016/j.devcel.2008.09.007. Erratum in: Dev Cell. 2009 Mar;16(3):482. Yu, Jing [added].

43.

GUDMAP: the genitourinary developmental molecular anatomy project.

McMahon AP, Aronow BJ, Davidson DR, Davies JA, Gaido KW, Grimmond S, Lessard JL, Little MH, Potter SS, Wilder EL, Zhang P; GUDMAP project.

J Am Soc Nephrol. 2008 Apr;19(4):667-71. doi: 10.1681/ASN.2007101078. Epub 2008 Feb 20.

44.

Epigenetic inheritance based evolution of antibiotic resistance in bacteria.

Adam M, Murali B, Glenn NO, Potter SS.

BMC Evol Biol. 2008 Feb 18;8:52. doi: 10.1186/1471-2148-8-52.

45.

Laser capture microdissection-microarray analysis of focal segmental glomerulosclerosis glomeruli.

Bennett MR, Czech KA, Arend LJ, Witte DP, Devarajan P, Potter SS.

Nephron Exp Nephrol. 2007;107(1):e30-40. Epub 2007 Aug 6.

PMID:
17684420
46.

Laser capture-microarray analysis of Lim1 mutant kidney development.

Potter SS, Hartman HA, Kwan KM, Behringer RR, Patterson LT.

Genesis. 2007 Jul;45(7):432-9.

PMID:
17610272
47.

pygopus 2 has a crucial, Wnt pathway-independent function in lens induction.

Song N, Schwab KR, Patterson LT, Yamaguchi T, Lin X, Potter SS, Lang RA.

Development. 2007 May;134(10):1873-85. Epub 2007 Apr 11.

48.

Pygo1 and Pygo2 roles in Wnt signaling in mammalian kidney development.

Schwab KR, Patterson LT, Hartman HA, Song N, Lang RA, Lin X, Potter SS.

BMC Biol. 2007 Apr 10;5:15.

49.

Comprehensive microarray analysis of Hoxa11/Hoxd11 mutant kidney development.

Schwab K, Hartman HA, Liang HC, Aronow BJ, Patterson LT, Potter SS.

Dev Biol. 2006 May 15;293(2):540-54. Epub 2006 Apr 11.

50.

The zinc finger transcription factor Sp8 regulates the generation and diversity of olfactory bulb interneurons.

Waclaw RR, Allen ZJ 2nd, Bell SM, Erdélyi F, Szabó G, Potter SS, Campbell K.

Neuron. 2006 Feb 16;49(4):503-16.

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