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Items: 12

1.

Electrostatic confinement and manipulation of DNA molecules for genome analysis.

Kounovsky-Shafer KL, Hernandez-Ortiz JP, Potamousis K, Tsvid G, Place M, Ravindran P, Jo K, Zhou S, Odijk T, de Pablo JJ, Schwartz DC.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13400-13405. doi: 10.1073/pnas.1711069114. Epub 2017 Dec 4.

2.

A clone-free, single molecule map of the domestic cow (Bos taurus) genome.

Zhou S, Goldstein S, Place M, Bechner M, Patino D, Potamousis K, Ravindran P, Pape L, Rincon G, Hernandez-Ortiz J, Medrano JF, Schwartz DC.

BMC Genomics. 2015 Aug 28;16:644. doi: 10.1186/s12864-015-1823-7.

3.

Single-molecule analysis reveals widespread structural variation in multiple myeloma.

Gupta A, Place M, Goldstein S, Sarkar D, Zhou S, Potamousis K, Kim J, Flanagan C, Li Y, Newton MA, Callander NS, Hematti P, Bresnick EH, Ma J, Asimakopoulos F, Schwartz DC.

Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7689-94. doi: 10.1073/pnas.1418577112. Epub 2015 Jun 8.

4.

Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis.

Ray M, Goldstein S, Zhou S, Potamousis K, Sarkar D, Newton MA, Esterberg E, Kendziorski C, Bogler O, Schwartz DC.

BMC Genomics. 2013 Jul 26;14:505. doi: 10.1186/1471-2164-14-505.

5.

High-resolution human genome structure by single-molecule analysis.

Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10848-53. doi: 10.1073/pnas.0914638107. Epub 2010 Jun 1.

6.

A single molecule scaffold for the maize genome.

Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, Livny M, Schwartz DC.

PLoS Genet. 2009 Nov;5(11):e1000711. doi: 10.1371/journal.pgen.1000711. Epub 2009 Nov 20.

7.

Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA.

Zhang P, Too PH, Samuelson JC, Chan SH, Vincze T, Doucette S, Bäckström S, Potamousis KD, Schramm TM, Forrest D, Schwartz DC, Xu SY.

Protein Expr Purif. 2010 Feb;69(2):226-34. doi: 10.1016/j.pep.2009.09.003. Epub 2009 Sep 9.

8.

Lineage-specific biology revealed by a finished genome assembly of the mouse.

Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP; Mouse Genome Sequencing Consortium.

PLoS Biol. 2009 May 5;7(5):e1000112. doi: 10.1371/journal.pbio.1000112. Epub 2009 May 26.

9.

Optical mapping discerns genome wide DNA methylation profiles.

Ananiev GE, Goldstein S, Runnheim R, Forrest DK, Zhou S, Potamousis K, Churas CP, Bergendahl V, Thomson JA, Schwartz DC.

BMC Mol Biol. 2008 Jul 30;9:68. doi: 10.1186/1471-2199-9-68.

10.

An integrative approach for the optical sequencing of single DNA molecules.

Ramanathan A, Huff EJ, Lamers CC, Potamousis KD, Forrest DK, Schwartz DC.

Anal Biochem. 2004 Jul 15;330(2):227-41.

PMID:
15203328
11.

Shotgun optical maps of the whole Escherichia coli O157:H7 genome.

Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, Qi R, Skiadas J, Ramanathan A, Perna NT, Plunkett G 3rd, Burland V, Mau B, Hackett J, Blattner FR, Anantharaman TS, Mishra B, Schwartz DC.

Genome Res. 2001 Sep;11(9):1584-93.

12.

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Perna NT, Plunkett G 3rd, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Pósfai G, Hackett J, Klink S, Boutin A, Shao Y, Miller L, Grotbeck EJ, Davis NW, Lim A, Dimalanta ET, Potamousis KD, Apodaca J, Anantharaman TS, Lin J, Yen G, Schwartz DC, Welch RA, Blattner FR.

Nature. 2001 Jan 25;409(6819):529-33. Erratum in: Nature 2001 Mar 8;410(6825):240.

PMID:
11206551

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