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Items: 1 to 50 of 55

1.

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L.

Sant'Ana GC, Pereira LFP, Pot D, Ivamoto ST, Domingues DS, Ferreira RV, Pagiatto NF, da Silva BSR, Nogueira LM, Kitzberger CSG, Scholz MBS, de Oliveira FF, Sera GH, Padilha L, Labouisse JP, Guyot R, Charmetant P, Leroy T.

Sci Rep. 2018 Jan 11;8(1):465. doi: 10.1038/s41598-017-18800-1.

2.

The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research.

Reynolds SM, Miller M, Lee P, Leinonen K, Paquette SM, Rodebaugh Z, Hahn A, Gibbs DL, Slagel J, Longabaugh WJ, Dhankani V, Reyes M, Pihl T, Backus M, Bookman M, Deflaux N, Bingham J, Pot D, Shmulevich I.

Cancer Res. 2017 Nov 1;77(21):e7-e10. doi: 10.1158/0008-5472.CAN-17-0617.

3.

Plasticity of Sorghum Stem Biomass Accumulation in Response to Water Deficit: A Multiscale Analysis from Internode Tissue to Plant Level.

Perrier L, Rouan L, Jaffuel S, Clément-Vidal A, Roques S, Soutiras A, Baptiste C, Bastianelli D, Fabre D, Dubois C, Pot D, Luquet D.

Front Plant Sci. 2017 Sep 1;8:1516. doi: 10.3389/fpls.2017.01516. eCollection 2017.

4.

Domestication reduces alternative splicing expression variations in sorghum.

Ranwez V, Serra A, Pot D, Chantret N.

PLoS One. 2017 Sep 8;12(9):e0183454. doi: 10.1371/journal.pone.0183454. eCollection 2017.

5.

Evolutionary forces affecting synonymous variations in plant genomes.

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S.

PLoS Genet. 2017 May 22;13(5):e1006799. doi: 10.1371/journal.pgen.1006799. eCollection 2017 May.

6.

Influence of the radial stem composition on the thermal behaviour of miscanthus and sorghum genotypes.

Chupin L, Ridder D, Clément-Vidal A, Soutiras A, Gineau E, Mouille G, Arnoult S, Brancourt-Hulmel M, Lapierre C, Pot D, Vincent L, Mija A, Navard P.

Carbohydr Polym. 2017 Jul 1;167:12-19. doi: 10.1016/j.carbpol.2017.03.002. Epub 2017 Mar 2.

PMID:
28433145
7.

Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis.

Ivamoto ST, Reis O Júnior, Domingues DS, Dos Santos TB, de Oliveira FF, Pot D, Leroy T, Vieira LG, Carazzolle MF, Pereira GA, Pereira LF.

PLoS One. 2017 Jan 9;12(1):e0169595. doi: 10.1371/journal.pone.0169595. eCollection 2017.

8.

Diterpenes biochemical profile and transcriptional analysis of cytochrome P450s genes in leaves, roots, flowers, and during Coffea arabica L. fruit development.

Ivamoto ST, Sakuray LM, Ferreira LP, Kitzberger CSG, Scholz MBS, Pot D, Leroy T, Vieira LGE, Domingues DS, Pereira LFP.

Plant Physiol Biochem. 2017 Feb;111:340-347. doi: 10.1016/j.plaphy.2016.12.004. Epub 2016 Dec 3.

PMID:
28002787
9.

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.

Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M.

Mol Ecol Resour. 2017 May;17(3):565-580. doi: 10.1111/1755-0998.12587. Epub 2016 Aug 29.

PMID:
27487989
10.

Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars.

Mofatto LS, Carneiro Fde A, Vieira NG, Duarte KE, Vidal RO, Alekcevetch JC, Cotta MG, Verdeil JL, Lapeyre-Montes F, Lartaud M, Leroy T, De Bellis F, Pot D, Rodrigues GC, Carazzolle MF, Pereira GA, Andrade AC, Marraccini P.

BMC Plant Biol. 2016 Apr 19;16:94. doi: 10.1186/s12870-016-0777-5.

11.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

12.

An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis.

Cubry P, de Bellis F, Avia K, Bouchet S, Pot D, Dufour M, Legnate H, Leroy T.

BMC Genomics. 2013 Jan 16;14:10. doi: 10.1186/1471-2164-14-10.

13.

Differentially expressed genes and proteins upon drought acclimation in tolerant and sensitive genotypes of Coffea canephora.

Marraccini P, Vinecky F, Alves GS, Ramos HJ, Elbelt S, Vieira NG, Carneiro FA, Sujii PS, Alekcevetch JC, Silva VA, DaMatta FM, Ferrão MA, Leroy T, Pot D, Vieira LG, da Silva FR, Andrade AC.

J Exp Bot. 2012 Jun;63(11):4191-212. doi: 10.1093/jxb/ers103. Epub 2012 Apr 17.

14.

Genetic structure, linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers.

Bouchet S, Pot D, Deu M, Rami JF, Billot C, Perrier X, Rivallan R, Gardes L, Xia L, Wenzl P, Kilian A, Glaszmann JC.

PLoS One. 2012;7(3):e33470. doi: 10.1371/journal.pone.0033470. Epub 2012 Mar 13.

15.

Characterization and expression of two cDNA encoding 3-Hydroxy-3-methylglutaryl coenzyme A reductase isoforms in coffee (Coffea arabica L.).

Tiski I, Marraccini P, Pot D, Vieira LG, Pereira LF.

OMICS. 2011 Oct;15(10):719-27. doi: 10.1089/omi.2010.0140. Epub 2011 Jul 13.

PMID:
21751872
16.

RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress.

Marraccini P, Freire LP, Alves GS, Vieira NG, Vinecky F, Elbelt S, Ramos HJ, Montagnon C, Vieira LG, Leroy T, Pot D, Silva VA, Rodrigues GC, Andrade AC.

BMC Plant Biol. 2011 May 16;11:85. doi: 10.1186/1471-2229-11-85.

17.

Expression patterns of three α-expansin isoforms in Coffea arabica during fruit development.

Budzinski IG, Santos TB, Sera T, Pot D, Vieira LG, Pereira LF.

Plant Biol (Stuttg). 2011 May;13(3):462-71. doi: 10.1111/j.1438-8677.2010.00400.x. Epub 2010 Oct 29.

PMID:
21489097
18.

Intracranial hemorrhage after high-dose methylprednisolone in a child with acute immune thrombocytopenic purpura.

Heitink-Pollé KM, Pot DJ, Engelkes M, Bruin MC.

Ann Hematol. 2011 Nov;90(11):1361-3. doi: 10.1007/s00277-011-1182-7. Epub 2011 Feb 18. No abstract available.

19.

The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits.

Privat I, Bardil A, Gomez AB, Severac D, Dantec C, Fuentes I, Mueller L, Joët T, Pot D, Foucrier S, Dussert S, Leroy T, Journot L, de Kochko A, Campa C, Combes MC, Lashermes P, Bertrand B.

BMC Genomics. 2011 Jan 5;12:5. doi: 10.1186/1471-2164-12-5.

20.

A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica.

Vidal RO, Mondego JM, Pot D, Ambrósio AB, Andrade AC, Pereira LF, Colombo CA, Vieira LG, Carazzolle MF, Pereira GA.

Plant Physiol. 2010 Nov;154(3):1053-66. doi: 10.1104/pp.110.162438. Epub 2010 Sep 23.

21.

[Transverse testicular ectopia confirmed by ultrasonography].

Lasfar W, van den Bosch RT, Pot DJ, Klijn AJ, de Wildt MJ, Gratama JW.

Ned Tijdschr Geneeskd. 2010;154:A155. Dutch.

PMID:
20170567
22.

Evaluation of kahweol and cafestol in coffee tissues and roasted coffee by a new high-performance liquid chromatography methodology.

Dias RC, Campanha FG, Vieira LG, Ferreira LP, Pot D, Marraccini P, De Toledo Benassi M.

J Agric Food Chem. 2010 Jan 13;58(1):88-93. doi: 10.1021/jf9027427.

PMID:
19928990
23.

Genetic differentiation of wild and cultivated populations: diversity of Coffea canephora Pierre in Uganda.

Musoli P, Cubry P, Aluka P, Billot C, Dufour M, De Bellis F, Pot D, Bieysse D, Charrier A, Leroy T.

Genome. 2009 Jul;52(7):634-46. doi: 10.1139/G09-037.

PMID:
19767894
24.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

25.

Image quality and patient acceptance of four regimens with different amounts of mild laxatives for CT colonography.

Jensch S, de Vries AH, Pot D, Peringa J, Bipat S, Florie J, van Gelder RE, Stoker J.

AJR Am J Roentgenol. 2008 Jul;191(1):158-67. doi: 10.2214/AJR.07.3128.

PMID:
18562740
26.

Effects of shade on the development and sugar metabolism of coffee (Coffea arabica L.) fruits.

Geromel C, Ferreira LP, Davrieux F, Guyot B, Ribeyre F, Brígida dos Santos Scholz M, Protasio Pereira LF, Vaast P, Pot D, Leroy T, Androcioli Filho A, Esteves Vieira LG, Mazzafera P, Marraccini P.

Plant Physiol Biochem. 2008 May-Jun;46(5-6):569-79. doi: 10.1016/j.plaphy.2008.02.006. Epub 2008 Mar 4.

PMID:
18420417
27.

Diversity in coffee assessed with SSR markers: structure of the genus Coffea and perspectives for breeding.

Cubry P, Musoli P, Legnaté H, Pot D, de Bellis F, Poncet V, Anthony F, Dufour M, Leroy T.

Genome. 2008 Jan;51(1):50-63. doi: 10.1139/g07-096.

PMID:
18356939
28.

[Diagnostic image (358). A neonate with splenomegaly and calcified adrenal glands].

Pot DJ, Kardux JJ.

Ned Tijdschr Geneeskd. 2008 Jan 26;152(4):202. Dutch.

PMID:
18320945
29.

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria.

Glasner JD, Plunkett G 3rd, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT.

Nucleic Acids Res. 2008 Jan;36(Database issue):D519-23. Epub 2007 Nov 13.

30.

A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease.

Greene JM, Plunkett G 3rd, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, Shetty P, Shi C, Whitmore J, Wong M, Zaremba S, Blattner FR, Perna NT.

Adv Exp Med Biol. 2007;603:28-42.

PMID:
17966403
31.

Biochemical and genomic analysis of sucrose metabolism during coffee (Coffea arabica) fruit development.

Geromel C, Ferreira LP, Guerreiro SM, Cavalari AA, Pot D, Pereira LF, Leroy T, Vieira LG, Mazzafera P, Marraccini P.

J Exp Bot. 2006;57(12):3243-58. Epub 2006 Aug 22.

PMID:
16926239
32.

A quantitative trait locus analysis of natural genetic variation for Drosophila melanogaster oxidative stress survival.

Wang Y, Pot D, Kachman SD, Nuzhdin SV, Harshman LG.

J Hered. 2006 Jul-Aug;97(4):355-66. Epub 2006 Jun 22.

PMID:
16793864
33.

Construction and characterization of a Coffea canephora BAC library to study the organization of sucrose biosynthesis genes.

Leroy T, Marraccini P, Dufour M, Montagnon C, Lashermes P, Sabau X, Ferreira LP, Jourdan I, Pot D, Andrade AC, Glaszmann JC, Vieira LG, Piffanelli P.

Theor Appl Genet. 2005 Oct;111(6):1032-41. Epub 2005 Oct 11.

PMID:
16133319
34.

Nucleotide variation in genes involved in wood formation in two pine species.

Pot D, McMillan L, Echt C, Le Provost G, Garnier-Géré P, Cato S, Plomion C.

New Phytol. 2005 Jul;167(1):101-12.

35.

[Favourable short-term effects of a multidisciplinary, behavioural therapy, group treatment for overweight or obese children].

Groen M, van den Akker E, van 't Spijker A, Pot DJ, Trijsburg W.

Ned Tijdschr Geneeskd. 2005 May 14;149(20):1102-6. Dutch.

PMID:
15932137
36.

Congenital analbuminaemia: biochemical and clinical implications. A case report and literature review.

Koot BG, Houwen R, Pot DJ, Nauta J.

Eur J Pediatr. 2004 Nov;163(11):664-70. Epub 2004 Aug 6. Review.

PMID:
15300429
37.

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C.

Plant Mol Biol. 2004 Feb;54(3):461-70.

PMID:
15284499
38.

Distribution of genomic regions differentiating oak species assessed by QTL detection.

Saintagne C, Bodénès C, Barreneche T, Pot D, Plomion C, Kremer A.

Heredity (Edinb). 2004 Jan;92(1):20-30.

39.
40.

Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings.

Dubos C, Le Provost G, Pot D, Salin F, Lalane C, Madur D, Frigerio JM, Plomion C.

Tree Physiol. 2003 Feb;23(3):169-79.

PMID:
12566267
41.

Characterization of a new member of the TNF family expressed on antigen presenting cells.

Tribouley C, Wallroth M, Chan V, Paliard X, Fang E, Lamson G, Pot D, Escobedo J, Williams LT.

Biol Chem. 1999 Dec;380(12):1443-7.

PMID:
10661873
42.
43.

SIP/SHIP inhibits Xenopus oocyte maturation induced by insulin and phosphatidylinositol 3-kinase.

Deuter-Reinhard M, Apell G, Pot D, Klippel A, Williams LT, Kavanaugh WM.

Mol Cell Biol. 1997 May;17(5):2559-65.

44.

Signaling inositol polyphosphate-5-phosphatase. Characterization of activity and effect of GRB2 association.

Jefferson AB, Auethavekiat V, Pot DA, Williams LT, Majerus PW.

J Biol Chem. 1997 Feb 28;272(9):5983-8.

45.
46.

Multiple forms of an inositol polyphosphate 5-phosphatase form signaling complexes with Shc and Grb2.

Kavanaugh WM, Pot DA, Chin SM, Deuter-Reinhard M, Jefferson AB, Norris FA, Masiarz FR, Cousens LS, Majerus PW, Williams LT.

Curr Biol. 1996 Apr 1;6(4):438-45.

47.

Foreign body aspiration in children. The diagnostic value of signs, symptoms and pre-operative examination.

Hoeve LJ, Rombout J, Pot DJ.

Clin Otolaryngol Allied Sci. 1993 Feb;18(1):55-7.

PMID:
8448893
48.

A thousand and two protein tyrosine phosphatases.

Pot DA, Dixon JE.

Biochim Biophys Acta. 1992 Jul 22;1136(1):35-43. Review. No abstract available.

49.

Sequential dephosphorylation of a multiply phosphorylated insulin receptor peptide by protein tyrosine phosphatases.

Ramachandran C, Aebersold R, Tonks NK, Pot DA.

Biochemistry. 1992 May 5;31(17):4232-8.

PMID:
1373652
50.

Active site labeling of a receptor-like protein tyrosine phosphatase.

Pot DA, Dixon JE.

J Biol Chem. 1992 Jan 5;267(1):140-3.

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