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The Molecular Evolution of Circadian Clock Genes in Spotted Gar (Lepisosteus oculatus).

Sun Y, Liu C, Huang M, Huang J, Liu C, Zhang J, Postlethwait JH, Wang H.

Genes (Basel). 2019 Aug 17;10(8). pii: E622. doi: 10.3390/genes10080622.


A Hormone That Lost Its Receptor: Anti-Müllerian Hormone (AMH) in Zebrafish Gonad Development and Sex Determination.

Yan YL, Batzel P, Titus T, Sydes J, Desvignes T, Bremiller R, Draper B, Postlethwait JH.

Genetics. 2019 Aug 9. pii: genetics.302365.2019. doi: 10.1534/genetics.119.302365. [Epub ahead of print]


Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development.

Ganz J, Melancon E, Wilson C, Amores A, Batzel P, Strader M, Braasch I, Diba P, Kuhlman JA, Postlethwait JH, Eisen JS.

Dev Biol. 2019 Aug 5. pii: S0012-1606(19)30224-6. doi: 10.1016/j.ydbio.2019.08.002. [Epub ahead of print]


Eye Degeneration and Loss of otx5b Expression in the Cavefish Sinocyclocheilus tileihornes.

Huang Z, Titus T, Postlethwait JH, Meng F.

J Mol Evol. 2019 Jul 22. doi: 10.1007/s00239-019-09901-8. [Epub ahead of print]


Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes.

Postlethwait JH, Navajas Acedo J, Piotrowski T.

Zebrafish. 2019 Jul 11. doi: 10.1089/zeb.2019.1760. [Epub ahead of print]


A Search for Sex-Linked Loci in the Agamid Lizard, Calotes versicolor.

Wilson CA, Priyanka, Titus T, Batzel P, Postlethwait JH, Raman R.

Sex Dev. 2019 Jun 28. doi: 10.1159/000500465. [Epub ahead of print]


Intergeneric hybrids inform reproductive isolating barriers in the Antarctic icefish radiation.

Desvignes T, Le François NR, Goetz LC, Smith SS, Shusdock KA, Parker SK, Postlethwait JH, Detrich HW 3rd.

Sci Rep. 2019 Apr 12;9(1):5989. doi: 10.1038/s41598-019-42354-z.


miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish.

Desvignes T, Batzel P, Sydes J, Eames BF, Postlethwait JH.

Sci Rep. 2019 Mar 8;9(1):3913. doi: 10.1038/s41598-019-40361-8.


Antarctic blackfin icefish genome reveals adaptations to extreme environments.

Kim BM, Amores A, Kang S, Ahn DH, Kim JH, Kim IC, Lee JH, Lee SG, Lee H, Lee J, Kim HW, Desvignes T, Batzel P, Sydes J, Titus T, Wilson CA, Catchen JM, Warren WC, Schartl M, Detrich HW 3rd, Postlethwait JH, Park H.

Nat Ecol Evol. 2019 Mar;3(3):469-478. doi: 10.1038/s41559-019-0812-7. Epub 2019 Feb 25.


Brain of the blind: transcriptomics of the golden-line cavefish brain.

Meng F, Zhao Y, Titus T, Zhang C, Postlethwait JH.

Curr Zool. 2018 Dec;64(6):765-773. doi: 10.1093/cz/zoy005. Epub 2018 Jan 12.


Adaptation of Proteins to the Cold in Antarctic Fish: A Role for Methionine?

Berthelot C, Clarke J, Desvignes T, William Detrich H ?III, Flicek P, Peck LS, Peters M, Postlethwait JH, Clark MS.

Genome Biol Evol. 2019 Jan 1;11(1):220-231. doi: 10.1093/gbe/evy262.


Female Sex Development and Reproductive Duct Formation Depend on Wnt4a in Zebrafish.

Kossack ME, High SK, Hopton RE, Yan YL, Postlethwait JH, Draper BW.

Genetics. 2019 Jan;211(1):219-233. doi: 10.1534/genetics.118.301620. Epub 2018 Nov 16.


Effect of Genetic Diagnosis on Patients with Previously Undiagnosed Disease.

Splinter K, Adams DR, Bacino CA, Bellen HJ, Bernstein JA, Cheatle-Jarvela AM, Eng CM, Esteves C, Gahl WA, Hamid R, Jacob HJ, Kikani B, Koeller DM, Kohane IS, Lee BH, Loscalzo J, Luo X, McCray AT, Metz TO, Mulvihill JJ, Nelson SF, Palmer CGS, Phillips JA 3rd, Pick L, Postlethwait JH, Reuter C, Shashi V, Sweetser DA, Tifft CJ, Walley NM, Wangler MF, Westerfield M, Wheeler MT, Wise AL, Worthey EA, Yamamoto S, Ashley EA; Undiagnosed Diseases Network.

N Engl J Med. 2018 Nov 29;379(22):2131-2139. doi: 10.1056/NEJMoa1714458. Epub 2018 Oct 10.


Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'.

Braasch I, Bobe J, Guiguen Y, Postlethwait JH.

Nat Genet. 2018 Jul;50(7):910-911. doi: 10.1038/s41588-018-0163-3. No abstract available.


Evolution of caudal fin ray development and caudal fin hypural diastema complex in spotted gar, teleosts, and other neopterygian fishes.

Desvignes T, Carey A, Postlethwait JH.

Dev Dyn. 2018 Jun;247(6):832-853. doi: 10.1002/dvdy.24630. Epub 2018 Apr 16.


Skeletal development in the heterocercal caudal fin of spotted gar (lepisosteus oculatus) and other lepisosteiformes.

Desvignes T, Carey A, Braasch I, Enright T, Postlethwait JH.

Dev Dyn. 2018 May;247(5):724-740. doi: 10.1002/dvdy.24617. Epub 2018 Jan 31.


Endocrine disruption and differential gene expression in sentinel fish on St. Lawrence Island, Alaska: Health implications for indigenous residents.

von Hippel FA, Miller PK, Carpenter DO, Dillon D, Smayda L, Katsiadaki I, Titus TA, Batzel P, Postlethwait JH, Buck CL.

Environ Pollut. 2018 Mar;234:279-287. doi: 10.1016/j.envpol.2017.11.054. Epub 2017 Dec 21.


The Spotted Gar: Genomic Journeys into a Lost World.

Braasch I, Postlethwait JH.

J Exp Zool B Mol Dev Evol. 2017 Nov;328(7):593-595. doi: 10.1002/jez.b.22775. No abstract available.


Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.

Pasquier J, Braasch I, Batzel P, Cabau C, Montfort J, Nguyen T, Jouanno E, Berthelot C, Klopp C, Journot L, Postlethwait JH, Guiguen Y, Bobe J.

J Exp Zool B Mol Dev Evol. 2017 Nov;328(7):709-721. doi: 10.1002/jez.b.22770. Epub 2017 Sep 25.


Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts.

Sullivan C, Lage CR, Yoder JA, Postlethwait JH, Kim CH.

PLoS One. 2017 Jun 28;12(6):e0179517. doi: 10.1371/journal.pone.0179517. eCollection 2017.


Cold Fusion: Massive Karyotype Evolution in the Antarctic Bullhead Notothen Notothenia coriiceps.

Amores A, Wilson CA, Allard CAH, Detrich HW 3rd, Postlethwait JH.

G3 (Bethesda). 2017 Jul 5;7(7):2195-2207. doi: 10.1534/g3.117.040063.


BAC Recombineering of the Agouti Loci from Spotted Gar and Zebrafish Reveals the Evolutionary Ancestry of Dorsal-Ventral Pigment Asymmetry in Fish.

Cal L, MegÍas M, Cerdá-Reverter JM, Postlethwait JH, Braasch I, Rotllant J.

J Exp Zool B Mol Dev Evol. 2017 Nov;328(7):697-708. doi: 10.1002/jez.b.22748. Epub 2017 May 24.


Lipid droplet biology and evolution illuminated by the characterization of a novel perilipin in teleost fish.

Granneman JG, Kimler VA, Zhang H, Ye X, Luo X, Postlethwait JH, Thummel R.

Elife. 2017 Feb 28;6. pii: e21771. doi: 10.7554/eLife.21771.


Pth4, an ancient parathyroid hormone lost in eutherian mammals, reveals a new brain-to-bone signaling pathway.

Suarez-Bregua P, Torres-Nuñez E, Saxena A, Guerreiro P, Braasch I, Prober DA, Moran P, Cerda-Reverter JM, Du SJ, Adrio F, Power DM, Canario AV, Postlethwait JH, Bronner ME, Cañestro C, Rotllant J.

FASEB J. 2017 Feb;31(2):569-583. doi: 10.1096/fj.201600815R. Epub 2016 Oct 24.


Characterization and Evolution of the Spotted Gar Retina.

Sukeena JM, Galicia CA, Wilson JD, McGinn T, Boughman JW, Robison BD, Postlethwait JH, Braasch I, Stenkamp DL, Fuerst PG.

J Exp Zool B Mol Dev Evol. 2016 Nov;326(7):403-421. doi: 10.1002/jez.b.22710. Epub 2016 Nov 9.


Variations on a theme: Genomics of sex determination in the cichlid fish Astatotilapia burtoni.

Böhne A, Wilson CA, Postlethwait JH, Salzburger W.

BMC Genomics. 2016 Nov 7;17(1):883.


Exogenous iodide ameliorates perchlorate-induced thyroid phenotypes in threespine stickleback.

Gardell AM, von Hippel FA, Adams EM, Dillon DM, Petersen AM, Postlethwait JH, Cresko WA, Buck CL.

Gen Comp Endocrinol. 2017 Mar 1;243:60-69. doi: 10.1016/j.ygcen.2016.10.014. Epub 2016 Nov 1.


Embryogenesis and early skeletogenesis in the antarctic bullhead notothen, Notothenia coriiceps.

Postlethwait JH, Yan YL, Desvignes T, Allard C, Titus T, Le François NR, Detrich HW 3rd.

Dev Dyn. 2016 Nov;245(11):1066-1080. doi: 10.1002/dvdy.24437. Epub 2016 Aug 29.


MicroRNA Profiling during Craniofacial Development: Potential Roles for Mir23b and Mir133b.

Ding HL, Hooper JE, Batzel P, Eames BF, Postlethwait JH, Artinger KB, Clouthier DE.

Front Physiol. 2016 Jul 14;7:281. doi: 10.3389/fphys.2016.00281. eCollection 2016.


Foxl2 and Its Relatives Are Evolutionary Conserved Players in Gonadal Sex Differentiation.

Bertho S, Pasquier J, Pan Q, Le Trionnaire G, Bobe J, Postlethwait JH, Pailhoux E, Schartl M, Herpin A, Guiguen Y.

Sex Dev. 2016;10(3):111-29. doi: 10.1159/000447611. Epub 2016 Jul 22. Review.


Perchlorate Exposure Reduces Primordial Germ Cell Number in Female Threespine Stickleback.

Petersen AM, Earp NC, Redmond ME, Postlethwait JH, von Hippel FA, Buck CL, Cresko WA.

PLoS One. 2016 Jul 6;11(7):e0157792. doi: 10.1371/journal.pone.0157792. eCollection 2016.


Vertebrate sex-determining genes play musical chairs.

Pan Q, Anderson J, Bertho S, Herpin A, Wilson C, Postlethwait JH, Schartl M, Guiguen Y.

C R Biol. 2016 Jul-Aug;339(7-8):258-62. doi: 10.1016/j.crvi.2016.05.010. Epub 2016 Jun 10. Review.


Pharyngeal morphogenesis requires fras1-itga8-dependent epithelial-mesenchymal interaction.

Talbot JC, Nichols JT, Yan YL, Leonard IF, BreMiller RA, Amacher SL, Postlethwait JH, Kimmel CB.

Dev Biol. 2016 Aug 1;416(1):136-148. doi: 10.1016/j.ydbio.2016.05.035. Epub 2016 Jun 2.


Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alfo Ldi J, Lindblad-Toh K, Postlethwait JH.

Nat Genet. 2016 May 27;48(6):700. doi: 10.1038/ng0616-700c. No abstract available.


Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J.

BMC Genomics. 2016 May 18;17:368. doi: 10.1186/s12864-016-2709-z.


Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish.

Desvignes T, Detrich HW 3rd, Postlethwait JH.

Mar Genomics. 2016 Dec;30:27-34. doi: 10.1016/j.margen.2016.04.013. Epub 2016 May 14.


The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.

Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, Ravi V, Lee AP, Nakamura T, Chalopin D, Fan S, Wcisel D, Cañestro C, Sydes J, Beaudry FE, Sun Y, Hertel J, Beam MJ, Fasold M, Ishiyama M, Johnson J, Kehr S, Lara M, Letaw JH, Litman GW, Litman RT, Mikami M, Ota T, Saha NR, Williams L, Stadler PF, Wang H, Taylor JS, Fontenot Q, Ferrara A, Searle SM, Aken B, Yandell M, Schneider I, Yoder JA, Volff JN, Meyer A, Amemiya CT, Venkatesh B, Holland PW, Guiguen Y, Bobe J, Shubin NH, Di Palma F, Alföldi J, Lindblad-Toh K, Postlethwait JH.

Nat Genet. 2016 Apr;48(4):427-37. doi: 10.1038/ng.3526. Epub 2016 Mar 7.


A Genetic Map for the Only Self-Fertilizing Vertebrate.

Kanamori A, Sugita Y, Yuasa Y, Suzuki T, Kawamura K, Uno Y, Kamimura K, Matsuda Y, Wilson CA, Amores A, Postlethwait JH, Suga K, Sakakura Y.

G3 (Bethesda). 2016 Apr 7;6(4):1095-106. doi: 10.1534/g3.115.022699.


X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev SA, Agarwala R, Volff JN, Postlethwait JH, Schartl M, Minx P, Warren WC, Walter RB.

BMC Genomics. 2016 Jan 7;17:37. doi: 10.1186/s12864-015-2361-z.


Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation.

Tallafuss A, Kelly M, Gay L, Gibson D, Batzel P, Karfilis KV, Eisen J, Stankunas K, Postlethwait JH, Washbourne P.

BMC Genomics. 2015 Dec 23;16:1100. doi: 10.1186/s12864-015-2215-8.


miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Desvignes T, Batzel P, Berezikov E, Eilbeck K, Eppig JT, McAndrews MS, Singer A, Postlethwait JH.

Trends Genet. 2015 Nov;31(11):613-626. doi: 10.1016/j.tig.2015.09.002. Epub 2015 Oct 8. Review.


"Wrecks of Ancient Life": Genetic Variants Vetted by Natural Selection.

Postlethwait JH.

Genetics. 2015 Jul;200(3):675-8. doi: 10.1534/genetics.115.178442.


Two Zebrafish hsd3b Genes Are Distinct in Function, Expression, and Evolution.

Lin JC, Hu S, Ho PH, Hsu HJ, Postlethwait JH, Chung BC.

Endocrinology. 2015 Aug;156(8):2854-62. doi: 10.1210/en.2014-1584. Epub 2015 May 14. Erratum in: Endocrinology. 2016 Feb;157(2):978.


Developmental timing of sodium perchlorate exposure alters angiogenesis, thyroid follicle proliferation and sexual maturation in stickleback.

Furin CG, von Hippel FA, Postlethwait JH, Buck CL, Cresko WA, O'Hara TM.

Gen Comp Endocrinol. 2015 Aug 1;219:24-35. doi: 10.1016/j.ygcen.2015.04.002. Epub 2015 Apr 9.


Perchlorate exposure does not modulate temporal variation of whole-body thyroid and androgen hormone content in threespine stickleback.

Gardell AM, Dillon DM, Smayda LC, von Hippel FA, Cresko WA, Postlethwait JH, Buck CL.

Gen Comp Endocrinol. 2015 Aug 1;219:45-52. doi: 10.1016/j.ygcen.2015.02.014. Epub 2015 Feb 27.


Circadian modulation of dopamine levels and dopaminergic neuron development contributes to attention deficiency and hyperactive behavior.

Huang J, Zhong Z, Wang M, Chen X, Tan Y, Zhang S, He W, He X, Huang G, Lu H, Wu P, Che Y, Yan YL, Postlethwait JH, Chen W, Wang H.

J Neurosci. 2015 Feb 11;35(6):2572-87. doi: 10.1523/JNEUROSCI.2551-14.2015.


Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes.

Liu C, Hu J, Qu C, Wang L, Huang G, Niu P, Zhong Z, Hong F, Wang G, Postlethwait JH, Wang H.

Sci Rep. 2015 Jan 29;5:8113. doi: 10.1038/srep08113.


Deep conservation of wrist and digit enhancers in fish.

Gehrke AR, Schneider I, de la Calle-Mustienes E, Tena JJ, Gomez-Marin C, Chandran M, Nakamura T, Braasch I, Postlethwait JH, Gómez-Skarmeta JL, Shubin NH.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):803-8. doi: 10.1073/pnas.1420208112. Epub 2014 Dec 22.


Perchlorate disrupts embryonic androgen synthesis and reproductive development in threespine stickleback without changing whole-body levels of thyroid hormone.

Petersen AM, Dillon D, Bernhardt RR, Torunsky R, Postlethwait JH, von Hippel FA, Loren Buck C, Cresko WA.

Gen Comp Endocrinol. 2015 Jan 1;210:130-44. doi: 10.1016/j.ygcen.2014.10.015. Epub 2014 Nov 10.


Phylogeny of zebrafish, a "model species," within Danio, a "model genus".

McCluskey BM, Postlethwait JH.

Mol Biol Evol. 2015 Mar;32(3):635-52. doi: 10.1093/molbev/msu325. Epub 2014 Nov 20.

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