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Items: 13

1.

Comparing allosteric transitions in the domains of calmodulin through coarse-grained simulations.

Nandigrami P, Portman JJ.

J Chem Phys. 2016 Mar 14;144(10):105102. doi: 10.1063/1.4943130.

PMID:
26979706
2.

Coarse-grained molecular simulations of allosteric cooperativity.

Nandigrami P, Portman JJ.

J Chem Phys. 2016 Mar 14;144(10):105101. doi: 10.1063/1.4943043.

PMID:
26979705
3.

Allostery and folding of the N-terminal receiver domain of protein NtrC.

Tripathi S, Portman JJ.

J Phys Chem B. 2013 Oct 24;117(42):13182-93. doi: 10.1021/jp403181p. Epub 2013 Sep 10.

PMID:
23961720
4.

Conformational flexibility and the mechanisms of allosteric transitions in topologically similar proteins.

Tripathi S, Portman JJ.

J Chem Phys. 2011 Aug 21;135(7):075104. doi: 10.1063/1.3625636.

PMID:
21861587
5.

Cooperativity and protein folding rates.

Portman JJ.

Curr Opin Struct Biol. 2010 Feb;20(1):11-5. doi: 10.1016/j.sbi.2009.12.013. Epub 2010 Jan 21. Review.

PMID:
20093004
6.

Inherent flexibility determines the transition mechanisms of the EF-hands of calmodulin.

Tripathi S, Portman JJ.

Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2104-9. doi: 10.1073/pnas.0806872106. Epub 2009 Feb 3.

7.

Capillarity-like growth of protein folding nuclei.

Qi X, Portman JJ.

Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11164-9. doi: 10.1073/pnas.0711527105. Epub 2008 Aug 4.

8.

Inherent flexibility and protein function: The open/closed conformational transition in the N-terminal domain of calmodulin.

Tripathi S, Portman JJ.

J Chem Phys. 2008 May 28;128(20):205104. doi: 10.1063/1.2928634.

PMID:
18513047
9.

Variationally determined free energy profiles for structural models of proteins: characteristic temperatures for folding and trapping.

Shen T, Zong C, Portman JJ, Wolynes PG.

J Phys Chem B. 2008 May 15;112(19):6074-82. doi: 10.1021/jp076280n. Epub 2008 Apr 1.

PMID:
18376882
10.

Excluded volume, local structural cooperativity, and the polymer physics of protein folding rates.

Qi X, Portman JJ.

Proc Natl Acad Sci U S A. 2007 Jun 26;104(26):10841-6. Epub 2007 Jun 14.

11.

Speeding molecular recognition by using the folding funnel: the fly-casting mechanism.

Shoemaker BA, Portman JJ, Wolynes PG.

Proc Natl Acad Sci U S A. 2000 Aug 1;97(16):8868-73.

12.

An elementary mode coupling theory of random heteropolymer dynamics.

Takada S, Portman JJ, Wolynes PG.

Proc Natl Acad Sci U S A. 1997 Mar 18;94(6):2318-21.

13.

Theoretical investigation of collisions of aligned atoms: Ca(4s4f 1F)+He.

Hickman AP, Portman JJ, Krebs S, Meyer W.

Phys Rev Lett. 1994 Mar 21;72(12):1814-1817. No abstract available.

PMID:
10055711

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