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Items: 33

1.

In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues.

Zhou SS, Xing Z, Liu H, Hu XG, Gao Q, Xu J, Jiao SQ, Jia KH, Jin YQ, Zhao W, Porth I, El-Kassaby YA, Mao JF.

BMC Genomics. 2019 Mar 13;20(1):213. doi: 10.1186/s12864-019-5584-6.

2.

Development of novel EST-SSR markers for Ephedra sinica (Ephedraceae) by transcriptome database mining.

Jiao SQ, Sun YQ, Zhang DX, Gao Q, Jin Y, Liu H, Ma Y, Yang Y, Porth I, Mao JF.

Appl Plant Sci. 2019 Jan 16;7(1):e01212. doi: 10.1002/aps3.1212. eCollection 2019 Jan.

3.

Genome sequence of Malania oleifera, a tree with great value for nervonic acid production.

Xu CQ, Liu H, Zhou SS, Zhang DX, Zhao W, Wang S, Chen F, Sun YQ, Nie S, Jia KH, Jiao SQ, Zhang RG, Yun QZ, Guan W, Wang X, Gao Q, Bennetzen JL, Maghuly F, Porth I, de Peer YV, Wang XR, Ma Y, Mao JF.

Gigascience. 2019 Feb 1;8(2). pii: giy164. doi: 10.1093/gigascience/giy164.

4.

Genomic selection of juvenile height across a single-generational gap in Douglas-fir.

Thistlethwaite FR, Ratcliffe B, Klápště J, Porth I, Chen C, Stoehr MU, El-Kassaby YA.

Heredity (Edinb). 2019 Jan 10. doi: 10.1038/s41437-018-0172-0. [Epub ahead of print]

PMID:
30631145
5.

Author Correction: Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus.

McKown AD, Klápště J, Guy RD, Soolanayakanahally RY, La Mantia J, Porth I, Skyba O, Unda F, Douglas CJ, El-Kassaby YA, Hamelin RC, Mansfield SD, Cronk QCB.

Sci Rep. 2018 Nov 22;8(1):17410. doi: 10.1038/s41598-018-35443-y.

6.

Gene copy number variations involved in balsam poplar (Populus balsamifera L.) adaptive variations.

Prunier J, Giguère I, Ryan N, Guy R, Soolanayakanahally R, Isabel N, MacKay J, Porth I.

Mol Ecol. 2018 Oct 1. doi: 10.1111/mec.14836. [Epub ahead of print]

PMID:
30270494
7.

High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant.

Dong AX, Xin HB, Li ZJ, Liu H, Sun YQ, Nie S, Zhao ZN, Cui RF, Zhang RG, Yun QZ, Wang XN, Maghuly F, Porth I, Cong RC, Mao JF.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy068.

8.

Partial correlation analysis of transcriptomes helps detangle the growth and defense network in spruce.

Porth I, White R, Jaquish B, Ritland K.

New Phytol. 2018 Jun;218(4):1349-1359. doi: 10.1111/nph.15075. Epub 2018 Mar 5.

PMID:
29504642
9.

Multienvironment genomic variance decomposition analysis of open-pollinated Interior spruce (Picea glauca x engelmannii).

El-Dien OG, Ratcliffe B, Klápště J, Porth I, Chen C, El-Kassaby YA.

Mol Breed. 2018;38(3):26. doi: 10.1007/s11032-018-0784-3. Epub 2018 Feb 15.

10.

Genomic prediction accuracies in space and time for height and wood density of Douglas-fir using exome capture as the genotyping platform.

Thistlethwaite FR, Ratcliffe B, Klápště J, Porth I, Chen C, Stoehr MU, El-Kassaby YA.

BMC Genomics. 2017 Dec 2;18(1):930. doi: 10.1186/s12864-017-4258-5.

11.

The gibberellin GID1-DELLA signalling module exists in evolutionarily ancient conifers.

Du R, Niu S, Liu Y, Sun X, Porth I, El-Kassaby YA, Li W.

Sci Rep. 2017 Nov 30;7(1):16637. doi: 10.1038/s41598-017-11859-w.

12.

Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus .

McKown AD, Klápště J, Guy RD, Soolanayakanahally RY, La Mantia J, Porth I, Skyba O, Unda F, Douglas CJ, El-Kassaby YA, Hamelin RC, Mansfield SD, Cronk QCB.

Sci Rep. 2017 May 12;7(1):1831. doi: 10.1038/s41598-017-01893-z. Erratum in: Sci Rep. 2018 Nov 22;8(1):17410.

13.

Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated Picea glauca.

Ratcliffe B, El-Dien OG, Cappa EP, Porth I, Klápště J, Chen C, El-Kassaby YA.

G3 (Bethesda). 2017 Mar 10;7(3):935-942. doi: 10.1534/g3.116.037895.

14.

Protein-specific localization of a rhodamine-based calcium-sensor in living cells.

Best M, Porth I, Hauke S, Braun F, Herten DP, Wombacher R.

Org Biomol Chem. 2016 Jun 28;14(24):5606-11. doi: 10.1039/c6ob00365f. Epub 2016 Apr 13.

PMID:
27072883
15.

Implementation of the Realized Genomic Relationship Matrix to Open-Pollinated White Spruce Family Testing for Disentangling Additive from Nonadditive Genetic Effects.

Gamal El-Dien O, Ratcliffe B, Klápště J, Porth I, Chen C, El-Kassaby YA.

G3 (Bethesda). 2016 Jan 22;6(3):743-53. doi: 10.1534/g3.115.025957.

16.

Evolutionary Quantitative Genomics of Populus trichocarpa.

Porth I, Klápště J, McKown AD, La Mantia J, Guy RD, Ingvarsson PK, Hamelin R, Mansfield SD, Ehlting J, Douglas CJ, El-Kassaby YA.

PLoS One. 2015 Nov 23;10(11):e0142864. doi: 10.1371/journal.pone.0142864. eCollection 2015.

17.

A transcriptomics investigation into pine reproductive organ development.

Niu S, Yuan H, Sun X, Porth I, Li Y, El-Kassaby YA, Li W.

New Phytol. 2016 Feb;209(3):1278-89. doi: 10.1111/nph.13680. Epub 2015 Sep 25.

18.

A comparison of genomic selection models across time in interior spruce (Picea engelmannii × glauca) using unordered SNP imputation methods.

Ratcliffe B, El-Dien OG, Klápště J, Porth I, Chen C, Jaquish B, El-Kassaby YA.

Heredity (Edinb). 2015 Dec;115(6):547-55. doi: 10.1038/hdy.2015.57. Epub 2015 Jul 1.

19.

Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing.

Gamal El-Dien O, Ratcliffe B, Klápště J, Chen C, Porth I, El-Kassaby YA.

BMC Genomics. 2015 May 9;16:370. doi: 10.1186/s12864-015-1597-y.

20.

Using Populus as a lignocellulosic feedstock for bioethanol.

Porth I, El-Kassaby YA.

Biotechnol J. 2015 Apr;10(4):510-24. doi: 10.1002/biot.201400194. Epub 2015 Feb 11. Review.

PMID:
25676392
21.

High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.

Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, Ziebell A, Klápště J, Porth I, Skyba O, Unda F, El-Kassaby YA, Douglas CJ, Mansfield SD, Martin J, Schackwitz W, Evans LM, Czarnecki O, Tuskan GA.

BMC Genomics. 2015 Jan 23;16:24. doi: 10.1186/s12864-015-1215-z.

22.

Regulation of secondary cell wall biosynthesis by poplar R2R3 MYB transcription factor PtrMYB152 in Arabidopsis.

Wang S, Li E, Porth I, Chen JG, Mansfield SD, Douglas CJ.

Sci Rep. 2014 May 23;4:5054. doi: 10.1038/srep05054.

23.

Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa.

McKown AD, Klápště J, Guy RD, Geraldes A, Porth I, Hannemann J, Friedmann M, Muchero W, Tuskan GA, Ehlting J, Cronk QC, El-Kassaby YA, Mansfield SD, Douglas CJ.

New Phytol. 2014 Jul;203(2):535-53. doi: 10.1111/nph.12815. Epub 2014 Apr 22.

24.

Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.

Porth I, Klápste J, McKown AD, La Mantia J, Hamelin RC, Skyba O, Unda F, Friedmann MC, Cronk QC, Ehlting J, Guy RD, Mansfield SD, El-Kassaby YA, Douglas CJ.

Plant Physiol. 2014 Feb;164(2):548-54. doi: 10.1104/pp.113.228783. Epub 2013 Dec 5.

25.

Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms.

Porth I, Klapšte J, Skyba O, Hannemann J, McKown AD, Guy RD, DiFazio SP, Muchero W, Ranjan P, Tuskan GA, Friedmann MC, Ehlting J, Cronk QC, El-Kassaby YA, Douglas CJ, Mansfield SD.

New Phytol. 2013 Nov;200(3):710-26. doi: 10.1111/nph.12422. Epub 2013 Jul 26.

26.

Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions.

Porth I, Klápště J, Skyba O, Friedmann MC, Hannemann J, Ehlting J, El-Kassaby YA, Mansfield SD, Douglas CJ.

New Phytol. 2013 Nov;200(3):727-42. doi: 10.1111/nph.12419. Epub 2013 Jul 29.

27.

A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, Klápště J, Martin J, Schackwitz W, Pennacchio C, Rokhsar D, Friedmann MC, Wasteneys GO, Guy RD, El-Kassaby YA, Mansfield SD, Cronk QC, Ehlting J, Douglas CJ, Tuskan GA.

Mol Ecol Resour. 2013 Mar;13(2):306-23. doi: 10.1111/1755-0998.12056. Epub 2013 Jan 11.

PMID:
23311503
28.

Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations.

Porth I, Klápště J, Skyba O, Lai BS, Geraldes A, Muchero W, Tuskan GA, Douglas CJ, El-Kassaby YA, Mansfield SD.

New Phytol. 2013 Feb;197(3):777-90. doi: 10.1111/nph.12014. Epub 2012 Dec 20.

29.

Genetical genomics identifies the genetic architecture for growth and weevil resistance in spruce.

Porth I, White R, Jaquish B, Alfaro R, Ritland C, Ritland K.

PLoS One. 2012;7(9):e44397. doi: 10.1371/journal.pone.0044397. Epub 2012 Sep 4.

30.

Defense mechanisms against herbivory in Picea: sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway.

Porth I, Hamberger B, White R, Ritland K.

BMC Genomics. 2011 Dec 16;12:608. doi: 10.1186/1471-2164-12-608.

31.

Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map.

Casasoli M, Derory J, Morera-Dutrey C, Brendel O, Porth I, Guehl JM, Villani F, Kremer A.

Genetics. 2006 Jan;172(1):533-46. Epub 2005 Oct 3.

32.
33.

Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Liebl.].

Scotti-Saintagne C, Mariette S, Porth I, Goicoechea PG, Barreneche T, Bodénès C, Burg K, Kremer A.

Genetics. 2004 Nov;168(3):1615-26.

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