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Invited review: Intergovernmental Panel on Climate Change, agriculture, and food-A case of shifting cultivation and history.

Porter JR, Challinor AJ, Henriksen CB, Howden SM, Martre P, Smith P.

Glob Chang Biol. 2019 May 16. doi: 10.1111/gcb.14700. [Epub ahead of print] Review.


Effects and relationships of grazing intensity on multiple ecosystem services in the Inner Mongolian steppe.

Fan F, Liang C, Tang Y, Harker-Schuch I, Porter JR.

Sci Total Environ. 2019 Jul 20;675:642-650. doi: 10.1016/j.scitotenv.2019.04.279. Epub 2019 Apr 19.


Implications of crop model ensemble size and composition for estimates of adaptation effects and agreement of recommendations.

Rodríguez A, Ruiz-Ramos M, Palosuo T, Carter TR, Fronzek S, Lorite IJ, Ferrise R, Pirttioja N, Bindi M, Baranowski P, Buis S, Cammarano D, Chen Y, Dumont B, Ewert F, Gaiser T, Hlavinka P, Hoffmann H, Höhn JG, Jurecka F, Kersebaum KC, Krzyszczak J, Lana M, Mechiche-Alami A, Minet J, Montesino M, Nendel C, Porter JR, Ruget F, Semenov MA, Steinmetz Z, Stratonovitch P, Supit I, Tao F, Trnka M, de Wit A, Rötter RP.

Agric For Meteorol. 2019 Jan 15;264:351-362. doi: 10.1016/j.agrformet.2018.09.018.


The Impact of Obesity in Patients Undergoing Robotic Partial Nephrectomy.

Rosen DC, Kannappan M, Kim Y, Paulucci DJ, Beksac AT, Abaza R, Eun DD, Bhandari A, Hemal AK, Porter JR, Badani KK.

J Endourol. 2019 Jun;33(6):431-437. doi: 10.1089/end.2019.0018.


Protein stability of p53 targets determines their temporal expression dynamics in response to p53 pulsing.

Hanson RL, Porter JR, Batchelor E.

J Cell Biol. 2019 Apr 1;218(4):1282-1297. doi: 10.1083/jcb.201803063. Epub 2019 Feb 11.


Cooperative Changes in Solvent Exposure Identify Cryptic Pockets, Switches, and Allosteric Coupling.

Porter JR, Moeder KE, Sibbald CA, Zimmerman MI, Hart KM, Greenberg MJ, Bowman GR.

Biophys J. 2019 Mar 5;116(5):818-830. doi: 10.1016/j.bpj.2018.11.3144. Epub 2019 Jan 25.


Enspara: Modeling molecular ensembles with scalable data structures and parallel computing.

Porter JR, Zimmerman MI, Bowman GR.

J Chem Phys. 2019 Jan 28;150(4):044108. doi: 10.1063/1.5063794.


Robotic retroperitoneal lymph node dissection for testicular cancer: feasibility and latest outcomes.

Mittakanti HR, Porter JR.

Curr Opin Urol. 2019 Mar;29(2):173-179. doi: 10.1097/MOU.0000000000000582.


Disaggregating Mass Public Shootings: A Comparative Analysis of Disgruntled Employee, School, Ideologically motivated, and Rampage Shooters.

Capellan JA, Johnson J, Porter JR, Martin C.

J Forensic Sci. 2019 May;64(3):814-823. doi: 10.1111/1556-4029.13985. Epub 2018 Dec 18.


Climate change impact and adaptation for wheat protein.

Asseng S, Martre P, Maiorano A, Rötter RP, O'Leary GJ, Fitzgerald GJ, Girousse C, Motzo R, Giunta F, Babar MA, Reynolds MP, Kheir AMS, Thorburn PJ, Waha K, Ruane AC, Aggarwal PK, Ahmed M, Balkovič J, Basso B, Biernath C, Bindi M, Cammarano D, Challinor AJ, De Sanctis G, Dumont B, Eyshi Rezaei E, Fereres E, Ferrise R, Garcia-Vila M, Gayler S, Gao Y, Horan H, Hoogenboom G, Izaurralde RC, Jabloun M, Jones CD, Kassie BT, Kersebaum KC, Klein C, Koehler AK, Liu B, Minoli S, Montesino San Martin M, Müller C, Naresh Kumar S, Nendel C, Olesen JE, Palosuo T, Porter JR, Priesack E, Ripoche D, Semenov MA, Stöckle C, Stratonovitch P, Streck T, Supit I, Tao F, Van der Velde M, Wallach D, Wang E, Webber H, Wolf J, Xiao L, Zhang Z, Zhao Z, Zhu Y, Ewert F.

Glob Chang Biol. 2019 Jan;25(1):155-173. doi: 10.1111/gcb.14481. Epub 2018 Nov 22.


Estimating Recent Local Impacts of Sea-Level Rise on Current Real-Estate Losses: A Housing Market Case Study in Miami-Dade, Florida.

McAlpine SA, Porter JR.

Popul Res Policy Rev. 2018;37(6):871-895. doi: 10.1007/s11113-018-9473-5. Epub 2018 Jun 26.


Global wheat production with 1.5 and 2.0°C above pre-industrial warming.

Liu B, Martre P, Ewert F, Porter JR, Challinor AJ, Müller C, Ruane AC, Waha K, Thorburn PJ, Aggarwal PK, Ahmed M, Balkovič J, Basso B, Biernath C, Bindi M, Cammarano D, De Sanctis G, Dumont B, Espadafor M, Eyshi Rezaei E, Ferrise R, Garcia-Vila M, Gayler S, Gao Y, Horan H, Hoogenboom G, Izaurralde RC, Jones CD, Kassie BT, Kersebaum KC, Klein C, Koehler AK, Maiorano A, Minoli S, Montesino San Martin M, Naresh Kumar S, Nendel C, O'Leary GJ, Palosuo T, Priesack E, Ripoche D, Rötter RP, Semenov MA, Stöckle C, Streck T, Supit I, Tao F, Van der Velde M, Wallach D, Wang E, Webber H, Wolf J, Xiao L, Zhang Z, Zhao Z, Zhu Y, Asseng S.

Glob Chang Biol. 2018 Dec 7. doi: 10.1111/gcb.14542. [Epub ahead of print]


Choice of Adaptive Sampling Strategy Impacts State Discovery, Transition Probabilities, and the Apparent Mechanism of Conformational Changes.

Zimmerman MI, Porter JR, Sun X, Silva RR, Bowman GR.

J Chem Theory Comput. 2018 Nov 13;14(11):5459-5475. doi: 10.1021/acs.jctc.8b00500. Epub 2018 Oct 23.


A Nomogram to Predict Significant Estimated Glomerular Filtration Rate Reduction After Robotic Partial Nephrectomy.

Martini A, Cumarasamy S, Beksac AT, Abaza R, Eun DD, Bhandari A, Hemal AK, Porter JR, Badani KK.

Eur Urol. 2018 Dec;74(6):833-839. doi: 10.1016/j.eururo.2018.08.037. Epub 2018 Sep 14.


Simulation of Soil Organic Carbon Effects on Long-Term Winter Wheat (Triticum aestivum) Production Under Varying Fertilizer Inputs.

Ghaley BB, Wösten H, Olesen JE, Schelde K, Baby S, Karki YK, Børgesen CD, Smith P, Yeluripati J, Ferrise R, Bindi M, Kuikman P, Lesschen JP, Porter JR.

Front Plant Sci. 2018 Aug 8;9:1158. doi: 10.3389/fpls.2018.01158. eCollection 2018.


Retroperitoneal vs Transperitoneal Robot-assisted Partial Nephrectomy: Comparison in a Multi-institutional Setting.

Arora S, Heulitt G, Menon M, Jeong W, Ahlawat RK, Capitanio U, Moon DA, Maes KK, Rawal S, Mottrie A, Bhandari M, Rogers CG, Porter JR.

Urology. 2018 Oct;120:131-137. doi: 10.1016/j.urology.2018.06.026. Epub 2018 Jul 25.


From genes to networks to what-works.

Porter JR, Wollenweber B, Jamieson PD, Fischer T.

Nat Plants. 2018 May;4(5):234. doi: 10.1038/s41477-018-0144-7. No abstract available.


Electron Cryo-microscopy Structure of Ebola Virus Nucleoprotein Reveals a Mechanism for Nucleocapsid-like Assembly.

Su Z, Wu C, Shi L, Luthra P, Pintilie GD, Johnson B, Porter JR, Ge P, Chen M, Liu G, Frederick TE, Binning JM, Bowman GR, Zhou ZH, Basler CF, Gross ML, Leung DW, Chiu W, Amarasinghe GK.

Cell. 2018 Feb 22;172(5):966-978.e12. doi: 10.1016/j.cell.2018.02.009.


Conversion of Robot-assisted Partial Nephrectomy to Radical Nephrectomy: A Prospective Multi-institutional Study.

Arora S, Chun B, Ahlawat RK, Abaza R, Adshead J, Porter JR, Challacombe B, Dasgupta P, Gandaglia G, Moon DA, Yuvaraja TB, Capitanio U, Larcher A, Porpiglia F, Mottrie A, Bhandari M, Rogers C.

Urology. 2018 Mar;113:85-90. doi: 10.1016/j.urology.2017.11.046. Epub 2017 Dec 25.


Global Inhibition with Specific Activation: How p53 and MYC Redistribute the Transcriptome in the DNA Double-Strand Break Response.

Porter JR, Fisher BE, Baranello L, Liu JC, Kambach DM, Nie Z, Koh WS, Luo J, Stommel JM, Levens D, Batchelor E.

Mol Cell. 2017 Sep 21;67(6):1013-1025.e9. doi: 10.1016/j.molcel.2017.07.028. Epub 2017 Aug 31.


'Trifecta' outcomes of robot-assisted partial nephrectomy in solitary kidney: a Vattikuti Collective Quality Initiative (VCQI) database analysis.

Arora S, Abaza R, Adshead JM, Ahlawat RK, Challacombe BJ, Dasgupta P, Gandaglia G, Moon DA, Yuvaraja TB, Capitanio U, Larcher A, Porpiglia F, Porter JR, Mottrie A, Bhandari M, Rogers C.

BJU Int. 2018 Jan;121(1):119-123. doi: 10.1111/bju.13967. Epub 2017 Aug 16.


A Laparoscopic Approach is Best for Retroperitoneal Lymph Node Dissection: Yes.

Porter JR.

J Urol. 2017 Jun;197(6):1384-1386. doi: 10.1016/j.juro.2017.03.065. Epub 2017 Apr 22. No abstract available.


Contribution of Crop Models to Adaptation in Wheat.

Chenu K, Porter JR, Martre P, Basso B, Chapman SC, Ewert F, Bindi M, Asseng S.

Trends Plant Sci. 2017 Jun;22(6):472-490. doi: 10.1016/j.tplants.2017.02.003. Epub 2017 Apr 4. Review.


Single-cell Gene Expression Profiling Using FACS and qPCR with Internal Standards.

Porter JR, Telford WG, Batchelor E.

J Vis Exp. 2017 Feb 25;(120). doi: 10.3791/55219.


Baby Steps Text: Feasibility Study of an SMS-Based Tool for Tracking Children's Developmental Progress.

Suh H, Porter JR, Racadio R, Sung YC, Kientz JA.

AMIA Annu Symp Proc. 2017 Feb 10;2016:1997-2006. eCollection 2016.


Circulating Microvesicles Are Elevated Acutely following Major Burns Injury and Associated with Clinical Severity.

O'Dea KP, Porter JR, Tirlapur N, Katbeh U, Singh S, Handy JM, Takata M.

PLoS One. 2016 Dec 9;11(12):e0167801. doi: 10.1371/journal.pone.0167801. eCollection 2016.


The Role of Lymphadenectomy for Renal Cell Carcinoma: Are we any Closer to an Answer?

Porter JR.

Eur Urol. 2017 Apr;71(4):568-569. doi: 10.1016/j.eururo.2016.10.028. Epub 2016 Oct 31. No abstract available.


Food and nutritional security requires adequate protein as well as energy, delivered from whole-year crop production.

Coles GD, Wratten SD, Porter JR.

PeerJ. 2016 Jul 12;4:e2100. doi: 10.7717/peerj.2100. eCollection 2016.


p53 Pulses Diversify Target Gene Expression Dynamics in an mRNA Half-Life-Dependent Manner and Delineate Co-regulated Target Gene Subnetworks.

Porter JR, Fisher BE, Batchelor E.

Cell Syst. 2016 Apr 27;2(4):272-82. doi: 10.1016/j.cels.2016.03.006. Epub 2016 Apr 7.


Glutathione antioxidant pathway activity and reserve determine toxicity and specificity of the biliary toxin biliatresone in zebrafish.

Zhao X, Lorent K, Wilkins BJ, Marchione DM, Gillespie K, Waisbourd-Zinman O, So J, Koo KA, Shin D, Porter JR, Wells RG, Blair I, Pack M.

Hepatology. 2016 Sep;64(3):894-907. doi: 10.1002/hep.28603. Epub 2016 Jun 11.


The toxin biliatresone causes mouse extrahepatic cholangiocyte damage and fibrosis through decreased glutathione and SOX17.

Waisbourd-Zinman O, Koh H, Tsai S, Lavrut PM, Dang C, Zhao X, Pack M, Cave J, Hawes M, Koo KA, Porter JR, Wells RG.

Hepatology. 2016 Sep;64(3):880-93. doi: 10.1002/hep.28599. Epub 2016 May 20.


Food, hunger, health, and climate change.

Woodward A, Porter JR.

Lancet. 2016 May 7;387(10031):1886-7. doi: 10.1016/S0140-6736(16)00349-4. Epub 2016 Mar 3. No abstract available. Erratum in: Lancet. 2016 May 7;387(10031):1908.


Gene editing: Edited plants should not be patented.

Porter JR, Durand JL, Elmayan T.

Nature. 2016 Feb 4;530(7588):33. doi: 10.1038/530033b. No abstract available.


Reactivity of Biliatresone, a Natural Biliary Toxin, with Glutathione, Histamine, and Amino Acids.

Koo KA, Waisbourd-Zinman O, Wells RG, Pack M, Porter JR.

Chem Res Toxicol. 2016 Feb 15;29(2):142-9. doi: 10.1021/acs.chemrestox.5b00308. Epub 2016 Jan 13.


Decoupling of greenhouse gas emissions from global agricultural production: 1970-2050.

Bennetzen EH, Smith P, Porter JR.

Glob Chang Biol. 2016 Feb;22(2):763-81. doi: 10.1111/gcb.13120. Epub 2016 Jan 6.


A Framework to Simplify Combined Sampling Strategies in Rosetta.

Porter JR, Weitzner BD, Lange OF.

PLoS One. 2015 Sep 18;10(9):e0138220. doi: 10.1371/journal.pone.0138220. eCollection 2015.


Robot-assisted retroperitoneal lymph node dissection in testicular cancer.

Abdul-Muhsin HM, L'esperance JO, Fischer K, Woods ME, Porter JR, Castle EP.

J Surg Oncol. 2015 Dec;112(7):736-40. doi: 10.1002/jso.24018. Epub 2015 Sep 9. Review.


Investigation and Expression of the Secoisolariciresinol Dehydrogenase Gene Involved in Podophyllotoxin Biosynthesis.

Arneaud SL, Porter JR.

Mol Biotechnol. 2015 Dec;57(11-12):961-73. doi: 10.1007/s12033-015-9888-8.


Biliatresone, a Reactive Natural Toxin from Dysphania glomulifera and D. littoralis: Discovery of the Toxic Moiety 1,2-Diaryl-2-Propenone.

Koo KA, Lorent K, Gong W, Windsor P, Whittaker SJ, Pack M, Wells RG, Porter JR.

Chem Res Toxicol. 2015 Aug 17;28(8):1519-21. doi: 10.1021/acs.chemrestox.5b00227. Epub 2015 Jul 20.


An Isoflavone from Leiophyllum buxifolium and Its Antiproliferative Effect.

Tian D, Porter JR.

J Nat Prod. 2015 Jul 24;78(7):1748-51. doi: 10.1021/acs.jnatprod.5b00100. Epub 2015 Jun 18.


Identification of a plant isoflavonoid that causes biliary atresia.

Lorent K, Gong W, Koo KA, Waisbourd-Zinman O, Karjoo S, Zhao X, Sealy I, Kettleborough RN, Stemple DL, Windsor PA, Whittaker SJ, Porter JR, Wells RG, Pack M.

Sci Transl Med. 2015 May 6;7(286):286ra67. doi: 10.1126/scitranslmed.aaa1652.


Relationship between C:N/C:O stoichiometry and ecosystem services in managed production systems.

Ghaley BB, Sandhu HS, Porter JR.

PLoS One. 2015 Apr 20;10(4):e0123869. doi: 10.1371/journal.pone.0123869. eCollection 2015.


Significance and value of non-traded ecosystem services on farmland.

Sandhu H, Wratten S, Costanza R, Pretty J, Porter JR, Reganold J.

PeerJ. 2015 Feb 17;3:e762. doi: 10.7717/peerj.762. eCollection 2015.


Cure violence: a public health model to reduce gun violence.

Butts JA, Roman CG, Bostwick L, Porter JR.

Annu Rev Public Health. 2015 Mar 18;36:39-53. doi: 10.1146/annurev-publhealth-031914-122509. Epub 2015 Jan 7.


Access to Cα backbone dynamics of biological solids by 13C T1 relaxation and molecular dynamics simulation.

Asami S, Porter JR, Lange OF, Reif B.

J Am Chem Soc. 2015 Jan 28;137(3):1094-100. doi: 10.1021/ja509367q. Epub 2015 Jan 15.


Plant science and the food security agenda.

Ingram JS, Porter JR.

Nat Plants. 2015 Nov 3;1:15173. doi: 10.1038/nplants.2015.173. No abstract available.


Using computational modeling and experimental synthetic perturbations to probe biological circuits.

Porter JR, Batchelor E.

Methods Mol Biol. 2015;1244:259-76. doi: 10.1007/978-1-4939-1878-2_12.


Novel production of terpenoids in Escherichia coli and activities against breast cancer cell lines.

Gupta S, Marko MG, Miller VA, Schaefer FT, Anthony JR, Porter JR.

Appl Biochem Biotechnol. 2015 Mar;175(5):2319-31. doi: 10.1007/s12010-014-1382-4. Epub 2014 Dec 9.


Impact of NADiA ProsVue PSA slope on secondary treatment decisions after radical prostatectomy.

Moul JW, Chen DY, Trabulsi EJ, Warlick CA, Ruckle HC, Porter JR, Yoshida JS, Adams GW, Kella N, Matsunaga GS, Bans LL, Sarno MJ, McDermed JE, Triebell MT, Reynolds MA; investigators of the ProsVue Field Experience Trial.

Prostate Cancer Prostatic Dis. 2014 Sep;17(3):280-5. doi: 10.1038/pcan.2014.25. Epub 2014 Jul 15.


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