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Items: 24

1.

Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli.

Foster PL, Niccum BA, Popodi E, Townes JP, Lee H, MohammedIsmail W, Tang H.

Genetics. 2018 Aug;209(4):1029-1042. doi: 10.1534/genetics.118.301237. Epub 2018 Jun 15.

2.

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli.

Lee H, Doak TG, Popodi E, Foster PL, Tang H.

Nucleic Acids Res. 2016 Sep 6;44(15):7109-19. doi: 10.1093/nar/gkw647. Epub 2016 Jul 18.

3.

Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.

Foster PL, Lee H, Popodi E, Townes JP, Tang H.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E5990-9. doi: 10.1073/pnas.1512136112. Epub 2015 Oct 12.

4.

Interactions and Localization of Escherichia coli Error-Prone DNA Polymerase IV after DNA Damage.

Mallik S, Popodi EM, Hanson AJ, Foster PL.

J Bacteriol. 2015 Sep;197(17):2792-809. doi: 10.1128/JB.00101-15. Epub 2015 Jun 22.

5.

Detection of structural variants involving repetitive regions in the reference genome.

Lee H, Popodi E, Foster PL, Tang H.

J Comput Biol. 2014 Mar;21(3):219-33. doi: 10.1089/cmb.2013.0129. Epub 2014 Feb 19.

PMID:
24552580
6.

On the mutational topology of the bacterial genome.

Foster PL, Hanson AJ, Lee H, Popodi EM, Tang H.

G3 (Bethesda). 2013 Mar;3(3):399-407. doi: 10.1534/g3.112.005355. Epub 2013 Mar 1.

7.

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.

Lee H, Popodi E, Tang H, Foster PL.

Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):E2774-83. doi: 10.1073/pnas.1210309109. Epub 2012 Sep 18.

8.

A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.

Venken KJ, Popodi E, Holtzman SL, Schulze KL, Park S, Carlson JW, Hoskins RA, Bellen HJ, Kaufman TC.

Genetics. 2010 Dec;186(4):1111-25. doi: 10.1534/genetics.110.121285. Epub 2010 Sep 27.

9.

Cooperativity between the beta-tubulin carboxy tail and the body of the molecule is required for microtubule function.

Popodi EM, Hoyle HD, Turner FR, Raff EC.

Cell Motil Cytoskeleton. 2008 Dec;65(12):955-63. doi: 10.1002/cm.20318.

10.

Axoneme beta-tubulin sequence determines attachment of outer dynein arms.

Raff EC, Hoyle HD, Popodi EM, Turner FR.

Curr Biol. 2008 Jun 24;18(12):911-4. doi: 10.1016/j.cub.2008.05.031.

11.

Axoneme specialization embedded in a "generalist" beta-tubulin.

Popodi EM, Hoyle HD, Turner FR, Xu K, Kruse S, Raff EC.

Cell Motil Cytoskeleton. 2008 Mar;65(3):216-37.

PMID:
18157906
12.

The proximal region of the beta-tubulin C-terminal tail is sufficient for axoneme assembly.

Popodi EM, Hoyle HD, Turner FR, Raff EC.

Cell Motil Cytoskeleton. 2005 Sep;62(1):48-64.

PMID:
16080206
13.

Adaptive evolution of bindin in the genus Heliocidaris is correlated with the shift to direct development.

Zigler KS, Raff EC, Popodi E, Raff RA, Lessios HA.

Evolution. 2003 Oct;57(10):2293-302.

PMID:
14628917
14.

Regulatory punctuated equilibrium and convergence in the evolution of developmental pathways in direct-developing sea urchins.

Raff EC, Popodi EM, Kauffman JS, Sly BJ, Turner FR, Morris VB, Raff RA.

Evol Dev. 2003 Sep-Oct;5(5):478-93.

PMID:
12950627
15.

Evolutionary convergence in Otx expression in the pentameral adult rudiment in direct-developing sea urchins.

Nielsen MG, Popodi E, Minsuk S, Raff RA.

Dev Genes Evol. 2003 Mar;213(2):73-82. Epub 2003 Feb 8.

PMID:
12632176
16.
17.

Maternal factors and the evolution of developmental mode: evolution of oogenesis in Heliocidaris erythrogramma.

Byrne M, Villinski JT, Cisternas P, Siegel RK, Popodi E, Raff RA.

Dev Genes Evol. 1999 May;209(5):275-83.

PMID:
11252180
18.

Hox genes in a pentameral animal.

Popodi E, Raff RA.

Bioessays. 2001 Mar;23(3):211-4. Review.

PMID:
11223877
19.

A novel ontogenetic pathway in hybrid embryos between species with different modes of development.

Raff EC, Popodi EM, Sly BJ, Turner FR, Villinski JT, Raff RA.

Development. 1999 May;126(9):1937-45.

20.

Sea urchin Hox genes: insights into the ancestral Hox cluster.

Popodi E, Kissinger JC, Andrews ME, Raff RA.

Mol Biol Evol. 1996 Oct;13(8):1078-86.

PMID:
8865662
21.

A sea urchin homologue of ceh-19, an unusual homeobox-containing gene from a nematode.

Popodi E, Andrews ME, Raff RA.

Gene. 1995 Oct 27;164(2):367-8.

PMID:
7590359
22.

Organization and expression of a second chromosome follicle cell gene cluster in Drosophila.

Popodi E, Minoo P, Burke T, Waring GL.

Dev Biol. 1988 Jun;127(2):248-56.

PMID:
3132408
23.
24.

The ribosomal RNA genes of three salmonid species.

Popodi EM, Greve D, Phillips RB, Wejksnora PJ.

Biochem Genet. 1985 Dec;23(11-12):997-1010.

PMID:
4084210

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