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CFTR dysregulation drives active selection of the gut microbiome.

Meeker SM, Mears KS, Sangwan N, Brittnacher MJ, Weiss EJ, Treuting PM, Tolley N, Pope CE, Hager KR, Vo AT, Paik J, Frevert CW, Hayden HS, Hoffman LR, Miller SI, Hajjar AM.

PLoS Pathog. 2020 Jan 21;16(1):e1008251. doi: 10.1371/journal.ppat.1008251. eCollection 2020 Jan.


Fecal dysbiosis in infants with cystic fibrosis is associated with early linear growth failure.

Hayden HS, Eng A, Pope CE, Brittnacher MJ, Vo AT, Weiss EJ, Hager KR, Martin BD, Leung DH, Heltshe SL, Borenstein E, Miller SI, Hoffman LR.

Nat Med. 2020 Feb;26(2):215-221. doi: 10.1038/s41591-019-0714-x. Epub 2020 Jan 20.


Human gut bacteria contain acquired interbacterial defence systems.

Ross BD, Verster AJ, Radey MC, Schmidtke DT, Pope CE, Hoffman LR, Hajjar AM, Peterson SB, Borenstein E, Mougous JD.

Nature. 2019 Nov;575(7781):224-228. doi: 10.1038/s41586-019-1708-z. Epub 2019 Oct 30.


Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles.

Nelson MT, Pope CE, Marsh RL, Wolter DJ, Weiss EJ, Hager KR, Vo AT, Brittnacher MJ, Radey MC, Hayden HS, Eng A, Miller SI, Borenstein E, Hoffman LR.

Cell Rep. 2019 Feb 19;26(8):2227-2240.e5. doi: 10.1016/j.celrep.2019.01.091.


How low can we go? The implications of low bacterial load in respiratory microbiota studies.

Marsh RL, Nelson MT, Pope CE, Leach AJ, Hoffman LR, Chang AB, Smith-Vaughan HC.

Pneumonia (Nathan). 2018 Jul 5;10:7. doi: 10.1186/s41479-018-0051-8. eCollection 2018. Review.


Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis.

Matamouros S, Hayden HS, Hager KR, Brittnacher MJ, Lachance K, Weiss EJ, Pope CE, Imhaus AF, McNally CP, Borenstein E, Hoffman LR, Miller SI.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1605-1610. doi: 10.1073/pnas.1714373115. Epub 2018 Jan 29.


LasR Variant Cystic Fibrosis Isolates Reveal an Adaptable Quorum-Sensing Hierarchy in Pseudomonas aeruginosa.

Feltner JB, Wolter DJ, Pope CE, Groleau MC, Smalley NE, Greenberg EP, Mayer-Hamblett N, Burns J, Déziel E, Hoffman LR, Dandekar AA.

mBio. 2016 Oct 4;7(5). pii: e01513-16. doi: 10.1128/mBio.01513-16.


The microbiota in bronchoalveolar lavage from young children with chronic lung disease includes taxa present in both the oropharynx and nasopharynx.

Marsh RL, Kaestli M, Chang AB, Binks MJ, Pope CE, Hoffman LR, Smith-Vaughan HC.

Microbiome. 2016 Jul 7;4(1):37. doi: 10.1186/s40168-016-0182-1.


Phenotypic and Molecular Characterization of Domestic Cat (Felis catus) Spermatogonial Stem Cells.

Powell RH, Galiguis J, Biancardi MN, Pope CE, Leibo SP, Wang G, Gómez MC.

Biol Reprod. 2016 Jul;95(1):20. doi: 10.1095/biolreprod.115.134635. Epub 2016 Jun 8.


Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis.

Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E.

Sci Rep. 2016 Mar 4;6:22493. doi: 10.1038/srep22493.


Cloning Endangered Felids by Interspecies Somatic Cell Nuclear Transfer.

Gómez MC, Pope CE.

Methods Mol Biol. 2015;1330:133-52. doi: 10.1007/978-1-4939-2848-4_13.


Characterization and Multilineage Differentiation of Domestic and Black-Footed Cat Mesenchymal Stromal/Stem Cells from Abdominal and Subcutaneous Adipose Tissue.

Gómez MC, Qin Q, Biancardi MN, Galiguis J, Dumas C, MacLean RA, Wang G, Pope CE.

Cell Reprogram. 2015 Oct;17(5):376-92. doi: 10.1089/cell.2015.0040. Epub 2015 Aug 28.


Cystic fibrosis mouse model-dependent intestinal structure and gut microbiome.

Bazett M, Honeyman L, Stefanov AN, Pope CE, Hoffman LR, Haston CK.

Mamm Genome. 2015 Jun;26(5-6):222-34. doi: 10.1007/s00335-015-9560-4. Epub 2015 Feb 27.


Directly sampling the lung of a young child with cystic fibrosis reveals diverse microbiota.

Brown PS, Pope CE, Marsh RL, Qin X, McNamara S, Gibson R, Burns JL, Deutsch G, Hoffman LR.

Ann Am Thorac Soc. 2014 Sep;11(7):1049-55. doi: 10.1513/AnnalsATS.201311-383OC. Review.


Pseudomonas aeruginosa in vitro phenotypes distinguish cystic fibrosis infection stages and outcomes.

Mayer-Hamblett N, Rosenfeld M, Gibson RL, Ramsey BW, Kulasekara HD, Retsch-Bogart GZ, Morgan W, Wolter DJ, Pope CE, Houston LS, Kulasekara BR, Khan U, Burns JL, Miller SI, Hoffman LR.

Am J Respir Crit Care Med. 2014 Aug 1;190(3):289-97. doi: 10.1164/rccm.201404-0681OC.


Pseudomonas aeruginosa phenotypes associated with eradication failure in children with cystic fibrosis.

Mayer-Hamblett N, Ramsey BW, Kulasekara HD, Wolter DJ, Houston LS, Pope CE, Kulasekara BR, Armbruster CR, Burns JL, Retsch-Bogart G, Rosenfeld M, Gibson RL, Miller SI, Khan U, Hoffman LR.

Clin Infect Dis. 2014 Sep 1;59(5):624-31. doi: 10.1093/cid/ciu385. Epub 2014 May 26.


Gastrointestinal pathology in juvenile and adult CFTR-knockout ferrets.

Sun X, Olivier AK, Yi Y, Pope CE, Hayden HS, Liang B, Sui H, Zhou W, Hager KR, Zhang Y, Liu X, Yan Z, Fisher JT, Keiser NW, Song Y, Tyler SR, Goeken JA, Kinyon JM, Radey MC, Fligg D, Wang X, Xie W, Lynch TJ, Kaminsky PM, Brittnacher MJ, Miller SI, Parekh K, Meyerholz DK, Hoffman LR, Frana T, Stewart ZA, Engelhardt JF.

Am J Pathol. 2014 May;184(5):1309-22. doi: 10.1016/j.ajpath.2014.01.035. Epub 2014 Mar 15.


Birth of a domestic cat kitten produced by vitrification of lipid polarized in vitro matured oocytes.

Galiguis J, Gómez MC, Leibo SP, Pope CE.

Cryobiology. 2014 Jun;68(3):459-66. doi: 10.1016/j.cryobiol.2014.02.012. Epub 2014 Mar 11.


Evaluation of microbial bacterial and fungal diversity in cerebrospinal fluid shunt infection.

Simon TD, Pope CE, Browd SR, Ojemann JG, Riva-Cambrin J, Mayer-Hamblett N, Rosenfeld M, Zerr DM, Hoffman L.

PLoS One. 2014 Jan 8;9(1):e83229. doi: 10.1371/journal.pone.0083229. eCollection 2014.


Aspects of in vivo oocyte production, blastocyst development, and embryo transfer in the cat.

Pope CE.

Theriogenology. 2014 Jan 1;81(1):126-37. doi: 10.1016/j.theriogenology.2013.09.006. Review.


Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis.

Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI.

Clin Infect Dis. 2014 Feb;58(3):396-9. doi: 10.1093/cid/cit715. Epub 2013 Oct 30.


Staphylococcus aureus small-colony variants are independently associated with worse lung disease in children with cystic fibrosis.

Wolter DJ, Emerson JC, McNamara S, Buccat AM, Qin X, Cochrane E, Houston LS, Rogers GB, Marsh P, Prehar K, Pope CE, Blackledge M, Déziel E, Bruce KD, Ramsey BW, Gibson RL, Burns JL, Hoffman LR.

Clin Infect Dis. 2013 Aug;57(3):384-91. doi: 10.1093/cid/cit270. Epub 2013 Apr 26.


Daily or thrice weekly handling of eland antelope (Taurotragus oryx): effects on serum cortisol level.

Pennington PM, Pope CE, MacLean RA, Galiguis J, Gentry LR, Godke RA, Wirtu G.

Res Vet Sci. 2013 Jun;94(3):711-6. doi: 10.1016/j.rvsc.2012.12.006. Epub 2013 Jan 3.


Applying embryo cryopreservation technologies to the production of domestic and black-footed cats.

Pope CE, Gómez MC, Galiguis J, Dresser Bl.

Reprod Domest Anim. 2012 Dec;47 Suppl 6:125-9. doi: 10.1111/rda.12053.


Characterization of mitochondrial and actin patterns in cat oocytes and blastocysts.

González R, Gómez MC, Pope CE, Brandt YC.

Reprod Domest Anim. 2012 Dec;47 Suppl 6:118-20. doi: 10.1111/rda.12028.


Gene expression profiling of pluripotency and differentiation-related markers in cat oocytes and preimplantation embryos.

Filliers M, Goossens K, Van Soom A, Merlo B, Pope CE, de Rooster H, Smits K, Vandaele L, Peelman LJ.

Reprod Fertil Dev. 2012;24(5):691-703. doi: 10.1071/RD11068.


In vivo survival of domestic cat oocytes after vitrification, intracytoplasmic sperm injection and embryo transfer.

Pope CE, Gómez MC, Kagawa N, Kuwayama M, Leibo SP, Dresser BL.

Theriogenology. 2012 Feb;77(3):531-8. doi: 10.1016/j.theriogenology.2011.08.028. Epub 2011 Oct 19.


Trichostatin A modified histone covalent pattern and enhanced expression of pluripotent genes in interspecies black-footed cat cloned embryos but did not improve in vitro and in vivo viability.

Gómez MC, Pope CE, Biancardi MN, Dumas C, Galiguis J, Morris AC, Wang G, Dresser BL.

Cell Reprogram. 2011 Aug;13(4):315-29. doi: 10.1089/cell.2010.0111. Epub 2011 Jun 30.


The evolution and distribution of phage ST160 within Salmonella enterica serotype Typhimurium.

Price-Carter M, Roy-Chowdhury P, Pope CE, Paine S, de Lisle GW, Collins DM, Nicol C, Carter PE.

Epidemiol Infect. 2011 Aug;139(8):1262-71. doi: 10.1017/S0950268810002335. Epub 2010 Oct 18.


Species distribution of Burkholderia cepacia complex isolates in cystic fibrosis and non-cystic fibrosis patients in New Zealand.

Pope CE, Short P, Carter PE.

J Cyst Fibros. 2010 Dec;9(6):442-6. doi: 10.1016/j.jcf.2010.08.011. Epub 2010 Sep 15.


Derivation of cat embryonic stem-like cells from in vitro-produced blastocysts on homologous and heterologous feeder cells.

Gómez MC, Serrano MA, Pope CE, Jenkins JA, Biancardi MN, López M, Dumas C, Galiguis J, Dresser BL.

Theriogenology. 2010 Sep 1;74(4):498-515. doi: 10.1016/j.theriogenology.2010.05.023.


Effect of cryopreservation and in vitro culture of bovine fibroblasts on histone acetylation levels and in vitro development of hand-made cloned embryos.

Chacón L, Gómez MC, Jenkins JA, Leibo SP, Wirtu G, Dresser BL, Pope CE.

Zygote. 2011 Aug;19(3):255-64. doi: 10.1017/S0967199410000316. Epub 2010 Jul 7.


Pharmacological treatment of obstructive sleep apnea with a combination of pseudoephedrine and domperidone.

Larrain A, Kapur VK, Gooley TA, Pope CE 2nd.

J Clin Sleep Med. 2010 Apr 15;6(2):117-23.


Prevalence and types of extended-spectrum beta-lactamases among urinary Escherichia coli and Klebsiella spp. in New Zealand.

Heffernan HM, Woodhouse RE, Pope CE, Blackmore TK.

Int J Antimicrob Agents. 2009 Dec;34(6):544-9. doi: 10.1016/j.ijantimicag.2009.07.014. Epub 2009 Sep 11.


Multilocus sequence typing of Campylobacter jejuni, and the correlation between clonal complex and pulsed-field gel electrophoresis macrorestriction profile.

McTavish SM, Pope CE, Nicol C, Campbell D, French N, Carter PE.

FEMS Microbiol Lett. 2009 Sep;298(2):149-56. doi: 10.1111/j.1574-6968.2009.01712.x. Epub 2009 Jun 30.


Production of bovine cloned embryos with donor cells frozen at a slow cooling rate in a conventional freezer (-20 degrees C).

Chacón L, Gómez MC, Jenkins JA, Leibo SP, Wirtu G, Dresser BL, Pope CE.

Zygote. 2009 Nov;17(4):341-51. doi: 10.1017/S0967199409005474. Epub 2009 Jun 8.


CMY-29 and CMY-30, two novel plasmid-mediated AmpC beta-lactamases.

Pope CE, Carter PE, Heffernan HM.

Antimicrob Agents Chemother. 2009 Jul;53(7):3178. doi: 10.1128/AAC.01586-08. Epub 2009 May 4. No abstract available.


Generation of domestic transgenic cloned kittens using lentivirus vectors.

Gómez MC, Pope CE, Kutner RH, Ricks DM, Lyons LA, Ruhe MT, Dumas C, Lyons J, Dresser BL, Reiser J.

Cloning Stem Cells. 2009 Mar;11(1):167-76. doi: 10.1089/clo.2008.0054.


Cloning endangered felids using heterospecific donor oocytes and interspecies embryo transfer.

Gómez MC, Pope CE, Ricks DM, Lyons J, Dumas C, Dresser BL.

Reprod Fertil Dev. 2009;21(1):76-82. Review.


Birth of domestic cat kittens of predetermined sex after transfer of embryos produced by in vitro fertilization of oocytes with flow-sorted sperm.

Pope CE, Crichton EG, Gómez MC, Dumas C, Dresser BL.

Theriogenology. 2009 Mar 15;71(5):864-71. doi: 10.1016/j.theriogenology.2008.10.012. Epub 2009 Jan 9.


Nuclear transfer of sand cat cells into enucleated domestic cat oocytes is affected by cryopreservation of donor cells.

Gómez MC, Pope CE, Kutner RH, Ricks DM, Lyons LA, Ruhe M, Dumas C, Lyons J, López M, Dresser BL, Reiser J.

Cloning Stem Cells. 2008 Dec;10(4):469-83. doi: 10.1089/clo.2008.0021.


Computer-assisted sperm analysis of fresh epididymal cat spermatozoa and the impact of cool storage (4 degrees C) on sperm quality.

Filliers M, Rijsselaere T, Bossaert P, De Causmaecker V, Dewulf J, Pope CE, Van Soom A.

Theriogenology. 2008 Dec;70(9):1550-9. doi: 10.1016/j.theriogenology.2008.07.004. Epub 2008 Aug 8.


Ultrasonographic-guided retrieval and in vitro maturation of eland (Taurotragus oryx) and bongo (Tragelaphus eurycerus isaaci) antelope oocytes.

Wirtu G, Pope CE, Paccamonti DL, Godke RA, Dresser BL.

Anim Reprod Sci. 2009 Apr;111(2-4):160-72. doi: 10.1016/j.anireprosci.2008.02.017. Epub 2008 Feb 29.


Cloned embryos from semen. Part 1: in vitro proliferation of epithelial cells on embryonic fibroblasts after isolation from semen by gradient centrifugation.

Nel-Themaat L, Gómez MC, Pope CE, Lopez M, Wirtu G, Cole A, Dresser BL, Lyons LA, Bondioli KR, Godke RA.

Cloning Stem Cells. 2008 Mar;10(1):143-60. doi: 10.1089/clo.2007.0067.


Cloned embryos from semen. Part 2: intergeneric nuclear transfer of semen-derived eland (Taurotragus oryx) epithelial cells into bovine oocytes.

Nel-Themaat L, Gómez MC, Pope CE, Lopez M, Wirtu G, Jenkins JA, Cole A, Dresser BL, Bondioli KR, Godke RA.

Cloning Stem Cells. 2008 Mar;10(1):161-72. doi: 10.1089/clo.2007.0069.


Wide geographical distribution of internationally rare Campylobacter clones within New Zealand.

McTavish SM, Pope CE, Nicol C, Sexton K, French N, Carter PE.

Epidemiol Infect. 2008 Sep;136(9):1244-52. Epub 2007 Nov 21.


Reversal of motility loss in bongo antelope (Tragelaphus eurycerus isaaci) spermatozoa contaminated with hyposmotic urine during electroejaculation.

Wirtu G, Pope CE, MacLean RA, Godke RA, Paccamonti DL, Dresser BL.

Anim Reprod Sci. 2008 Jan 30;103(3-4):392-7. Epub 2007 Jun 17.


Treatment of severe snoring with a combination of pseudoephedrine sulfate and domperidone.

Larrain A, Hudson M, Dominitz JA, Pope CE 2nd.

J Clin Sleep Med. 2006 Jan 15;2(1):21-5.


Isolation, culture and characterisation of somatic cells derived from semen and milk of endangered sheep and eland antelope.

Nel-Themaat L, Gómez MC, Damiani P, Wirtu G, Dresser BL, Bondioli KR, Lyons LA, Pope CE, Godke RA.

Reprod Fertil Dev. 2007;19(4):576-84.


Behavioral training and hydraulic chute restraint enables handling of eland antelope (Taurotragus oryx) without general anesthesia.

Wirtu G, Cole A, Pope CE, Short CR, Godke RA, Dresser BL.

J Zoo Wildl Med. 2005 Mar;36(1):1-11.


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