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Items: 25

1.

Additional evidence of the link between mtDNA copy number and the body mass index.

Skuratovskaia DA, Sofronova JK, Zatolokin PA, Popadin KY, Vasilenko MA, Litvinova LS, Mazunin IO.

Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Dec;29(8):1240-1244. doi: 10.1080/24701394.2018.1436170. Epub 2018 Feb 10. No abstract available.

PMID:
29429383
2.

Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection.

Popadin K, Peischl S, Garieri M, Sailani MR, Letourneau A, Santoni F, Lukowski SW, Bazykin GA, Nikolaev S, Meyer D, Excoffier L, Reymond A, Antonarakis SE.

Genome Res. 2018 Jan;28(1):1-10. doi: 10.1101/gr.228411.117. Epub 2017 Dec 13.

3.

The Immune Signaling Adaptor LAT Contributes to the Neuroanatomical Phenotype of 16p11.2 BP2-BP3 CNVs.

Loviglio MN, Arbogast T, Jønch AE, Collins SC, Popadin K, Bonnet CS, Giannuzzi G, Maillard AM, Jacquemont S; 16p11.2 Consortium, Yalcin B, Katsanis N, Golzio C, Reymond A.

Am J Hum Genet. 2017 Oct 5;101(4):564-577. doi: 10.1016/j.ajhg.2017.08.016. Epub 2017 Sep 28.

4.

The genomic landscape of human cellular circadian variation points to a novel role for the signalosome.

Gaspar L, Howald C, Popadin K, Maier B, Mauvoisin D, Moriggi E, Gutierrez-Arcelus M, Falconnet E, Borel C, Kunz D, Kramer A, Gachon F, Dermitzakis ET, Antonarakis SE, Brown SA.

Elife. 2017 Sep 4;6. pii: e24994. doi: 10.7554/eLife.24994.

5.

Data on the time of integration of the human mitochondrial pseudogenes (NUMTs) into the nuclear genome.

Gunbin K, Peshkin L, Popadin K, Annis S, Ackermann RR, Khrapko K.

Data Brief. 2017 May 17;13:536-544. doi: 10.1016/j.dib.2017.05.024. eCollection 2017 Aug.

6.

Integration of mtDNA pseudogenes into the nuclear genome coincides with speciation of the human genus. A hypothesis.

Gunbin K, Peshkin L, Popadin K, Annis S, Ackermann RR, Khrapko K.

Mitochondrion. 2017 May;34:20-23. doi: 10.1016/j.mito.2016.12.001. Epub 2016 Dec 12.

PMID:
27979772
7.

Amelioration of premature aging in mtDNA mutator mouse by exercise: the interplay of oxidative stress, PGC-1α, p53, and DNA damage. A hypothesis.

Safdar A, Annis S, Kraytsberg Y, Laverack C, Saleem A, Popadin K, Woods DC, Tilly JL, Khrapko K.

Curr Opin Genet Dev. 2016 Jun;38:127-132. doi: 10.1016/j.gde.2016.06.011. Epub 2016 Aug 3. Review.

8.

Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma.

Bonilla X, Parmentier L, King B, Bezrukov F, Kaya G, Zoete V, Seplyarskiy VB, Sharpe HJ, McKee T, Letourneau A, Ribaux PG, Popadin K, Basset-Seguin N, Ben Chaabene R, Santoni FA, Andrianova MA, Guipponi M, Garieri M, Verdan C, Grosdemange K, Sumara O, Eilers M, Aifantis I, Michielin O, de Sauvage FJ, Antonarakis SE, Nikolaev SI.

Nat Genet. 2016 Apr;48(4):398-406. doi: 10.1038/ng.3525. Epub 2016 Mar 7.

PMID:
26950094
9.

APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.

Seplyarskiy VB, Soldatov RA, Popadin KY, Antonarakis SE, Bazykin GA, Nikolaev SI.

Genome Res. 2016 Feb;26(2):174-82. doi: 10.1101/gr.197046.115. Epub 2016 Jan 11.

10.

Corrigendum: Domains of genome-wide gene expression dysregulation in Down's syndrome.

Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, Falconnet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE.

Nature. 2016 Mar 17;531(7594):400. doi: 10.1038/nature16135. Epub 2015 Dec 2. No abstract available.

PMID:
26633627
11.

DNA-Methylation Patterns in Trisomy 21 Using Cells from Monozygotic Twins.

Sailani MR, Santoni FA, Letourneau A, Borel C, Makrythanasis P, Hibaoui Y, Popadin K, Bonilla X, Guipponi M, Gehrig C, Vannier A, Carre-Pigeon F, Feki A, Nizetic D, Antonarakis SE.

PLoS One. 2015 Aug 28;10(8):e0135555. doi: 10.1371/journal.pone.0135555. eCollection 2015.

12.

Biased allelic expression in human primary fibroblast single cells.

Borel C, Ferreira PG, Santoni F, Delaneau O, Fort A, Popadin KY, Garieri M, Falconnet E, Ribaux P, Guipponi M, Padioleau I, Carninci P, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2015 Jan 8;96(1):70-80. doi: 10.1016/j.ajhg.2014.12.001. Epub 2014 Dec 31.

13.

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

Popadin KY, Gutierrez-Arcelus M, Lappalainen T, Buil A, Steinberg J, Nikolaev SI, Lukowski SW, Bazykin GA, Seplyarskiy VB, Ioannidis P, Zdobnov EM, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2014 Dec 4;95(6):660-74. doi: 10.1016/j.ajhg.2014.11.003.

14.

Mitochondrial DNA mutations and cancer: lessons from the parathyroid.

Popadin K, Gunbin KV, Khrapko K.

Am J Pathol. 2014 Nov;184(11):2852-4. doi: 10.1016/j.ajpath.2014.09.001. Epub 2014 Sep 19. No abstract available.

PMID:
25242389
15.

When man got his mtDNA deletions?

Popadin K, Safdar A, Kraytsberg Y, Khrapko K.

Aging Cell. 2014 Aug;13(4):579-82. doi: 10.1111/acel.12231. Epub 2014 Jun 4.

16.

Domains of genome-wide gene expression dysregulation in Down's syndrome.

Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, Falconnet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE.

Nature. 2014 Apr 17;508(7496):345-50. doi: 10.1038/nature13200. Erratum in: Nature. 2016 Mar 17;531(7594):400.

PMID:
24740065
17.

Genetic and epigenetic regulation of human lincRNA gene expression.

Popadin K, Gutierrez-Arcelus M, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2013 Dec 5;93(6):1015-26. doi: 10.1016/j.ajhg.2013.10.022. Epub 2013 Nov 21.

18.

Roles of mitochondrial dynamics under stressful and normal conditions in yeast cells.

Knorre DA, Popadin KY, Sokolov SS, Severin FF.

Oxid Med Cell Longev. 2013;2013:139491. doi: 10.1155/2013/139491. Epub 2013 Jul 14. Review.

19.

The complex SNP and CNV genetic architecture of the increased risk of congenital heart defects in Down syndrome.

Sailani MR, Makrythanasis P, Valsesia A, Santoni FA, Deutsch S, Popadin K, Borel C, Migliavacca E, Sharp AJ, Duriaux Sail G, Falconnet E, Rabionet K, Serra-Juhé C, Vicari S, Laux D, Grattau Y, Dembour G, Megarbane A, Touraine R, Stora S, Kitsiou S, Fryssira H, Chatzisevastou-Loukidou C, Kanavakis E, Merla G, Bonnet D, Pérez-Jurado LA, Estivill X, Delabar JM, Antonarakis SE.

Genome Res. 2013 Sep;23(9):1410-21. doi: 10.1101/gr.147991.112. Epub 2013 Jun 19.

20.

Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.

Popadin KY, Nikolaev SI, Junier T, Baranova M, Antonarakis SE.

Mol Biol Evol. 2013 Feb;30(2):347-55. doi: 10.1093/molbev/mss219. Epub 2012 Sep 14.

PMID:
22983951
21.

Repeats, longevity and the sources of mtDNA deletions: evidence from 'deletional spectra'.

Guo X, Popadin KY, Markuzon N, Orlov YL, Kraytsberg Y, Krishnan KJ, Zsurka G, Turnbull DM, Kunz WS, Khrapko K.

Trends Genet. 2010 Aug;26(8):340-3. doi: 10.1016/j.tig.2010.05.006. Epub 2010 Jun 28.

22.

Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements.

Nikolaev SI, Montoya-Burgos JI, Popadin K, Parand L, Margulies EH; National Institutes of Health Intramural Sequencing Center Comparative Sequencing Program, Antonarakis SE.

Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20443-8. Epub 2007 Dec 11.

23.

A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures.

Popadin KY, Mamirova LA, Kondrashov FA.

BMC Bioinformatics. 2007 Nov 14;8:441.

24.

Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals.

Popadin K, Polishchuk LV, Mamirova L, Knorre D, Gunbin K.

Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13390-5. Epub 2007 Aug 6.

25.

Purifying selection in mitochondria, free-living and obligate intracellular proteobacteria.

Mamirova L, Popadin K, Gelfand MS.

BMC Evol Biol. 2007 Feb 12;7:17.

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