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Items: 26

1.

Stoichiometric analysis of the energetics and metabolic impact of photorespiration in C3 plants.

Huma B, Kundu S, Poolman MG, Kruger NJ, Fell DA.

Plant J. 2018 Dec;96(6):1228-1241. doi: 10.1111/tpj.14105. Epub 2018 Oct 20.

PMID:
30257035
2.

The intertwined metabolism during symbiotic nitrogen fixation elucidated by metabolic modelling.

Pfau T, Christian N, Masakapalli SK, Sweetlove LJ, Poolman MG, Ebenhöh O.

Sci Rep. 2018 Aug 21;8(1):12504. doi: 10.1038/s41598-018-30884-x.

3.

Model-assisted metabolic engineering of Escherichia coli for long chain alkane and alcohol production.

Fatma Z, Hartman H, Poolman MG, Fell DA, Srivastava S, Shakeel T, Yazdani SS.

Metab Eng. 2018 Mar;46:1-12. doi: 10.1016/j.ymben.2018.01.002. Epub 2018 Feb 3.

PMID:
29408291
4.

Model-based biotechnological potential analysis of Kluyveromyces marxianus central metabolism.

Pentjuss A, Stalidzans E, Liepins J, Kokina A, Martynova J, Zikmanis P, Mozga I, Scherbaka R, Hartman H, Poolman MG, Fell DA, Vigants A.

J Ind Microbiol Biotechnol. 2017 Aug;44(8):1177-1190. doi: 10.1007/s10295-017-1946-8. Epub 2017 Apr 25.

PMID:
28444480
5.

A Genome Scale Model of Geobacillus thermoglucosidasius (C56-YS93) reveals its biotechnological potential on rice straw hydrolysate.

Ahmad A, Hartman HB, Krishnakumar S, Fell DA, Poolman MG, Srivastava S.

J Biotechnol. 2017 Jun 10;251:30-37. doi: 10.1016/j.jbiotec.2017.03.031. Epub 2017 Apr 4.

PMID:
28385593
6.

A genome-scale metabolic network reconstruction of tomato (Solanum lycopersicum L.) and its application to photorespiratory metabolism.

Yuan H, Cheung CY, Poolman MG, Hilbers PA, van Riel NA.

Plant J. 2016 Jan;85(2):289-304. doi: 10.1111/tpj.13075. Epub 2016 Jan 4.

7.

Metabolic trade-offs between biomass synthesis and photosynthate export at different light intensities in a genome-scale metabolic model of rice.

Poolman MG, Kundu S, Shaw R, Fell DA.

Front Plant Sci. 2014 Nov 28;5:656. doi: 10.3389/fpls.2014.00656. eCollection 2014.

8.

Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation.

Hartman HB, Fell DA, Rossell S, Jensen PR, Woodward MJ, Thorndahl L, Jelsbak L, Olsen JE, Raghunathan A, Daefler S, Poolman MG.

Microbiology. 2014 Jun;160(Pt 6):1252-1266. doi: 10.1099/mic.0.076091-0. Epub 2014 Apr 28.

PMID:
24777662
9.

A Diel Flux Balance Model Captures Interactions between Light and Dark Metabolism during Day-Night Cycles in C3 and Crassulacean Acid Metabolism Leaves.

Cheung CY, Poolman MG, Fell DA, Ratcliffe RG, Sweetlove LJ.

Plant Physiol. 2014 Jun;165(2):917-929. Epub 2014 Mar 4.

10.

Meta-analysis using a novel database, miRStress, reveals miRNAs that are frequently associated with the radiation and hypoxia stress-responses.

Jacobs LA, Bewicke-Copley F, Poolman MG, Pink RC, Mulcahy LA, Baker I, Beaman EM, Brooks T, Caley DP, Cowling W, Currie JM, Horsburgh J, Kenehan L, Keyes E, Leite D, Massa D, McDermott-Rouse A, Samuel P, Wood H, Kadhim M, Carter DR.

PLoS One. 2013 Nov 14;8(11):e80844. doi: 10.1371/journal.pone.0080844. eCollection 2013.

11.

A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions.

Cheung CY, Williams TC, Poolman MG, Fell DA, Ratcliffe RG, Sweetlove LJ.

Plant J. 2013 Sep;75(6):1050-61. doi: 10.1111/tpj.12252. Epub 2013 Aug 6.

12.

Responses to light intensity in a genome-scale model of rice metabolism.

Poolman MG, Kundu S, Shaw R, Fell DA.

Plant Physiol. 2013 Jun;162(2):1060-72. doi: 10.1104/pp.113.216762. Epub 2013 May 2.

13.

Building and analysing genome-scale metabolic models.

Fell DA, Poolman MG, Gevorgyan A.

Biochem Soc Trans. 2010 Oct;38(5):1197-201. doi: 10.1042/BST0381197.

PMID:
20863283
14.

A genome-scale metabolic model accurately predicts fluxes in central carbon metabolism under stress conditions.

Williams TC, Poolman MG, Howden AJ, Schwarzlander M, Fell DA, Ratcliffe RG, Sweetlove LJ.

Plant Physiol. 2010 Sep;154(1):311-23. doi: 10.1104/pp.110.158535. Epub 2010 Jul 6.

15.

A genome-scale metabolic model of Arabidopsis and some of its properties.

Poolman MG, Miguet L, Sweetlove LJ, Fell DA.

Plant Physiol. 2009 Nov;151(3):1570-81. doi: 10.1104/pp.109.141267. Epub 2009 Sep 15.

16.

Contribution of NADH increases to ethanol's inhibition of retinol oxidation by human ADH isoforms.

Chase JR, Poolman MG, Fell DA.

Alcohol Clin Exp Res. 2009 Apr;33(4):571-80. doi: 10.1111/j.1530-0277.2008.00871.x. Epub 2009 Jan 16.

17.

Detection of stoichiometric inconsistencies in biomolecular models.

Gevorgyan A, Poolman MG, Fell DA.

Bioinformatics. 2008 Oct 1;24(19):2245-51. doi: 10.1093/bioinformatics/btn425. Epub 2008 Aug 12.

PMID:
18697772
18.

Modular decomposition of metabolic systems via null-space analysis.

Poolman MG, Sebu C, Pidcock MK, Fell DA.

J Theor Biol. 2007 Dec 21;249(4):691-705. Epub 2007 Aug 19.

PMID:
17949756
19.

Challenges to be faced in the reconstruction of metabolic networks from public databases.

Poolman MG, Bonde BK, Gevorgyan A, Patel HH, Fell DA.

Syst Biol (Stevenage). 2006 Sep;153(5):379-84.

PMID:
16986322
20.

ScrumPy: metabolic modelling with Python.

Poolman MG.

Syst Biol (Stevenage). 2006 Sep;153(5):375-8.

PMID:
16986321
21.

A method for the determination of flux in elementary modes, and its application to Lactobacillus rhamnosus.

Poolman MG, Venkatesh KV, Pidcock MK, Fell DA.

Biotechnol Bioeng. 2004 Dec 5;88(5):601-12.

PMID:
15470705
22.

Applications of metabolic modelling to plant metabolism.

Poolman MG, Assmus HE, Fell DA.

J Exp Bot. 2004 May;55(400):1177-86. Epub 2004 Apr 8.

PMID:
15073223
23.

Elementary modes analysis of photosynthate metabolism in the chloroplast stroma.

Poolman MG, Fell DA, Raines CA.

Eur J Biochem. 2003 Feb;270(3):430-9.

24.

Computer modelling and experimental evidence for two steady states in the photosynthetic Calvin cycle.

Poolman MG, Olçer H, Lloyd JC, Raines CA, Fell DA.

Eur J Biochem. 2001 May;268(10):2810-6.

25.

Modelling photosynthesis and its control.

Poolman MG, Fell DA, Thomas S.

J Exp Bot. 2000 Feb;51 Spec No:319-28.

PMID:
10938839
26.

Reply from e-d. Schulze.

Thomas S, Moniz-Barreto JP, Fell DA, Woods JH, Poolman MG.

Trends Ecol Evol. 1995 Jun;10(6):245. No abstract available.

PMID:
21237023

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