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Items: 1 to 50 of 285

1.

Regulation of Amino Acid Transport in Saccharomyces cerevisiae.

Bianchi F, Van't Klooster JS, Ruiz SJ, Poolman B.

Microbiol Mol Biol Rev. 2019 Oct 16;83(4). pii: e00024-19. doi: 10.1128/MMBR.00024-19. Print 2019 Nov 20. Review.

2.

A synthetic metabolic network for physicochemical homeostasis.

Pols T, Sikkema HR, Gaastra BF, Frallicciardi J, Śmigiel WM, Singh S, Poolman B.

Nat Commun. 2019 Sep 18;10(1):4239. doi: 10.1038/s41467-019-12287-2.

3.

Cell Fuelling and Metabolic Energy Conservation in Synthetic Cells.

Sikkema HR, Gaastra BF, Pols T, Poolman B.

Chembiochem. 2019 Oct 15;20(20):2581-2592. doi: 10.1002/cbic.201900398. Epub 2019 Aug 23. Review.

PMID:
31381223
4.

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers.

de Boer M, Gouridis G, Vietrov R, Begg SL, Schuurman-Wolters GK, Husada F, Eleftheriadis N, Poolman B, McDevitt CA, Cordes T.

Elife. 2019 Mar 22;8. pii: e44652. doi: 10.7554/eLife.44652.

5.

Decreased Effective Macromolecular Crowding in Escherichia coli Adapted to Hyperosmotic Stress.

Liu B, Hasrat Z, Poolman B, Boersma AJ.

J Bacteriol. 2019 Apr 24;201(10). pii: e00708-18. doi: 10.1128/JB.00708-18. Print 2019 May 15.

6.

Adaption to glucose limitation is modulated by the pleotropic regulator CcpA, independent of selection pressure strength.

Price CE, Branco Dos Santos F, Hesseling A, Uusitalo JJ, Bachmann H, Benavente V, Goel A, Berkhout J, Bruggeman FJ, Marrink SJ, Montalban-Lopez M, de Jong A, Kok J, Molenaar D, Poolman B, Teusink B, Kuipers OP.

BMC Evol Biol. 2019 Jan 10;19(1):15. doi: 10.1186/s12862-018-1331-x.

7.

Coupling efficiency of secondary active transporters.

Henderson RK, Fendler K, Poolman B.

Curr Opin Biotechnol. 2019 Aug;58:62-71. doi: 10.1016/j.copbio.2018.11.005. Epub 2018 Nov 28. Review. No abstract available.

PMID:
30502621
8.

How Important Is Protein Diffusion in Prokaryotes?

Schavemaker PE, Boersma AJ, Poolman B.

Front Mol Biosci. 2018 Nov 13;5:93. doi: 10.3389/fmolb.2018.00093. eCollection 2018. Review.

9.

(Membrane) Protein Production in Context.

Schavemaker PE, Poolman B.

Trends Biochem Sci. 2018 Nov;43(11):858-868. doi: 10.1016/j.tibs.2018.08.009. Epub 2018 Sep 13. Review.

PMID:
30220516
10.

Method for immobilization of living and synthetic cells for high-resolution imaging and single-particle tracking.

Syga Ł, Spakman D, Punter CM, Poolman B.

Sci Rep. 2018 Sep 13;8(1):13789. doi: 10.1038/s41598-018-32166-y.

11.

Influence of Fluorescent Protein Maturation on FRET Measurements in Living Cells.

Liu B, Mavrova SN, van den Berg J, Kristensen SK, Mantovanelli L, Veenhoff LM, Poolman B, Boersma AJ.

ACS Sens. 2018 Sep 28;3(9):1735-1742. doi: 10.1021/acssensors.8b00473. Epub 2018 Sep 12.

12.

Niosomes, an alternative for liposomal delivery.

Bartelds R, Nematollahi MH, Pols T, Stuart MCA, Pardakhty A, Asadikaram G, Poolman B.

PLoS One. 2018 Apr 12;13(4):e0194179. doi: 10.1371/journal.pone.0194179. eCollection 2018.

13.

Protein Linkers Provide Limits on the Domain Interactions in the ABC Importer GlnPQ and Determine the Rate of Transport.

Schuurman-Wolters GK, de Boer M, Pietrzyk MK, Poolman B.

J Mol Biol. 2018 Apr 13;430(8):1249-1262. doi: 10.1016/j.jmb.2018.02.014. Epub 2018 Feb 25.

PMID:
29486154
14.

Energy Coupling Efficiency in the Type I ABC Transporter GlnPQ.

Lycklama A Nijeholt JA, Vietrov R, Schuurman-Wolters GK, Poolman B.

J Mol Biol. 2018 Mar 16;430(6):853-866. doi: 10.1016/j.jmb.2018.02.001. Epub 2018 Feb 9.

PMID:
29432725
15.

Steric exclusion and protein conformation determine the localization of plasma membrane transporters.

Bianchi F, Syga Ł, Moiset G, Spakman D, Schavemaker PE, Punter CM, Seinen AB, van Oijen AM, Robinson A, Poolman B.

Nat Commun. 2018 Feb 5;9(1):501. doi: 10.1038/s41467-018-02864-2.

16.

Responsive DNA G-quadruplex micelles.

Cozzoli L, Gjonaj L, Stuart MCA, Poolman B, Roelfes G.

Chem Commun (Camb). 2018 Jan 2;54(3):260-263. doi: 10.1039/c7cc07899d.

PMID:
29231221
17.

Real-Time Conformational Changes and Controlled Orientation of Native Proteins Inside a Protein Nanoreactor.

Van Meervelt V, Soskine M, Singh S, Schuurman-Wolters GK, Wijma HJ, Poolman B, Maglia G.

J Am Chem Soc. 2017 Dec 27;139(51):18640-18646. doi: 10.1021/jacs.7b10106. Epub 2017 Dec 13.

18.

Combined engineering of disaccharide transport and phosphorolysis for enhanced ATP yield from sucrose fermentation in Saccharomyces cerevisiae.

Marques WL, Mans R, Henderson RK, Marella ER, Horst JT, Hulster E, Poolman B, Daran JM, Pronk JT, Gombert AK, van Maris AJA.

Metab Eng. 2018 Jan;45:121-133. doi: 10.1016/j.ymben.2017.11.012. Epub 2017 Dec 2.

PMID:
29196124
19.

Ribosome surface properties may impose limits on the nature of the cytoplasmic proteome.

Schavemaker PE, Śmigiel WM, Poolman B.

Elife. 2017 Nov 20;6. pii: e30084. doi: 10.7554/eLife.30084.

20.

Proton-solute coupling mechanism of the maltose transporter from Saccharomyces cerevisiae.

Henderson R, Poolman B.

Sci Rep. 2017 Oct 30;7(1):14375. doi: 10.1038/s41598-017-14438-1.

21.

A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy.

Franken LE, Oostergetel GT, Pijning T, Puri P, Arkhipova V, Boekema EJ, Poolman B, Guskov A.

Nat Commun. 2017 Sep 28;8(1):722. doi: 10.1038/s41467-017-00718-x.

22.

Ionic Strength Sensing in Living Cells.

Liu B, Poolman B, Boersma AJ.

ACS Chem Biol. 2017 Oct 20;12(10):2510-2514. doi: 10.1021/acschembio.7b00348. Epub 2017 Sep 6.

23.

Design and Properties of Genetically Encoded Probes for Sensing Macromolecular Crowding.

Liu B, Åberg C, van Eerden FJ, Marrink SJ, Poolman B, Boersma AJ.

Biophys J. 2017 May 9;112(9):1929-1939. doi: 10.1016/j.bpj.2017.04.004.

24.

Microorganisms maintain crowding homeostasis.

van den Berg J, Boersma AJ, Poolman B.

Nat Rev Microbiol. 2017 May;15(5):309-318. doi: 10.1038/nrmicro.2017.17. Epub 2017 Mar 27. Review.

PMID:
28344349
25.

On the Spatial Organization of mRNA, Plasmids, and Ribosomes in a Bacterial Host Overexpressing Membrane Proteins.

van Gijtenbeek LA, Robinson A, van Oijen AM, Poolman B, Kok J.

PLoS Genet. 2016 Dec 15;12(12):e1006523. doi: 10.1371/journal.pgen.1006523. eCollection 2016 Dec.

26.

An updated structural classification of substrate-binding proteins.

Scheepers GH, Lycklama A Nijeholt JA, Poolman B.

FEBS Lett. 2016 Dec;590(23):4393-4401. doi: 10.1002/1873-3468.12445. Epub 2016 Oct 23.

27.

On the mobility, membrane location and functionality of mechanosensitive channels in Escherichia coli.

van den Berg J, Galbiati H, Rasmussen A, Miller S, Poolman B.

Sci Rep. 2016 Sep 6;6:32709. doi: 10.1038/srep32709.

28.

Asymmetry in inward- and outward-affinity constant of transport explain unidirectional lysine flux in Saccharomyces cerevisiae.

Bianchi F, Klooster JS, Ruiz SJ, Luck K, Pols T, Urbatsch IL, Poolman B.

Sci Rep. 2016 Aug 23;6:31443. doi: 10.1038/srep31443.

29.

A Plasma Membrane Association Module in Yeast Amino Acid Transporters.

Popov-Čeleketić D, Bianchi F, Ruiz SJ, Meutiawati F, Poolman B.

J Biol Chem. 2016 Jul 29;291(31):16024-37. doi: 10.1074/jbc.M115.706770. Epub 2016 May 19.

30.

Relative Rates of Amino Acid Import via the ABC Transporter GlnPQ Determine the Growth Performance of Lactococcus lactis.

Fulyani F, Schuurman-Wolters GK, Slotboom DJ, Poolman B.

J Bacteriol. 2015 Nov 9;198(3):477-85. doi: 10.1128/JB.00685-15. Print 2016 Feb 1.

31.

Watching conformational dynamics of ABC transporters with single-molecule tools.

Husada F, Gouridis G, Vietrov R, Schuurman-Wolters GK, Ploetz E, de Boer M, Poolman B, Cordes T.

Biochem Soc Trans. 2015 Oct;43(5):1041-7. doi: 10.1042/BST20150140. Review.

PMID:
26517920
32.

Active Nuclear Import of Membrane Proteins Revisited.

Laba JK, Steen A, Popken P, Chernova A, Poolman B, Veenhoff LM.

Cells. 2015 Oct 13;4(4):653-73. doi: 10.3390/cells4040653.

33.

Emergence of life: Physical chemistry changes the paradigm.

Spitzer J, Pielak GJ, Poolman B.

Biol Direct. 2015 Jun 10;10:33. doi: 10.1186/s13062-015-0060-y. Review.

34.

Engineering Escherichia coli for functional expression of membrane proteins.

Ho FY, Poolman B.

Methods Enzymol. 2015;556:3-21. doi: 10.1016/bs.mie.2015.01.003. Epub 2015 Mar 20.

PMID:
25857775
35.

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?

Goel A, Eckhardt TH, Puri P, de Jong A, Branco Dos Santos F, Giera M, Fusetti F, de Vos WM, Kok J, Poolman B, Molenaar D, Kuipers OP, Teusink B.

Mol Microbiol. 2015 Jul;97(1):77-92. doi: 10.1111/mmi.13012. Epub 2015 May 9.

36.

In memoriam: Wilhelmus Nicolaas Konings (1937-2014).

Driessen AJ, Poolman B.

Extremophiles. 2015 Mar;19(2):233-4. doi: 10.1007/s00792-015-0736-3. No abstract available.

PMID:
25666832
37.

Single liposome analysis of peptide translocation by the ABC transporter TAPL.

Zollmann T, Moiset G, Tumulka F, Tampé R, Poolman B, Abele R.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):2046-51. doi: 10.1073/pnas.1418100112. Epub 2015 Feb 2.

38.

A sensor for quantification of macromolecular crowding in living cells.

Boersma AJ, Zuhorn IS, Poolman B.

Nat Methods. 2015 Mar;12(3):227-9, 1 p following 229. doi: 10.1038/nmeth.3257. Epub 2015 Feb 2.

PMID:
25643150
39.

Size-dependent leak of soluble and membrane proteins through the yeast nuclear pore complex.

Popken P, Ghavami A, Onck PR, Poolman B, Veenhoff LM.

Mol Biol Cell. 2015 Apr 1;26(7):1386-94. doi: 10.1091/mbc.E14-07-1175. Epub 2015 Jan 28.

40.

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ.

Gouridis G, Schuurman-Wolters GK, Ploetz E, Husada F, Vietrov R, de Boer M, Cordes T, Poolman B.

Nat Struct Mol Biol. 2015 Jan;22(1):57-64. doi: 10.1038/nsmb.2929. Epub 2014 Dec 8.

PMID:
25486304
41.

Intrinsically disordered linker and plasma membrane-binding motif sort Ist2 and Ssy1 to junctions.

Kralt A, Carretta M, Mari M, Reggiori F, Steen A, Poolman B, Veenhoff LM.

Traffic. 2015 Feb;16(2):135-47. doi: 10.1111/tra.12243. Epub 2014 Dec 28.

42.

Disaccharides impact the lateral organization of lipid membranes.

Moiset G, López CA, Bartelds R, Syga L, Rijpkema E, Cukkemane A, Baldus M, Poolman B, Marrink SJ.

J Am Chem Soc. 2014 Nov 19;136(46):16167-75. doi: 10.1021/ja505476c. Epub 2014 Nov 5.

PMID:
25316578
43.

Impact of osmotic stress on protein diffusion in Lactococcus lactis.

Mika JT, Schavemaker PE, Krasnikov V, Poolman B.

Mol Microbiol. 2014 Nov;94(4):857-70. doi: 10.1111/mmi.12800. Epub 2014 Oct 13.

44.

Systematic identification of tRNAome and its dynamics in Lactococcus lactis.

Puri P, Wetzel C, Saffert P, Gaston KW, Russell SP, Cordero Varela JA, van der Vlies P, Zhang G, Limbach PA, Ignatova Z, Poolman B.

Mol Microbiol. 2014 Sep;93(5):944-56. doi: 10.1111/mmi.12710. Epub 2014 Aug 6.

45.

Susceptibility to COPD: differential proteomic profiling after acute smoking.

Franciosi L, Postma DS, van den Berge M, Govorukhina N, Horvatovich PL, Fusetti F, Poolman B, Lodewijk ME, Timens W, Bischoff R, ten Hacken NH.

PLoS One. 2014 Jul 18;9(7):e102037. doi: 10.1371/journal.pone.0102037. eCollection 2014.

46.

Bacillus subtilis spore protein SpoVAC functions as a mechanosensitive channel.

Velásquez J, Schuurman-Wolters G, Birkner JP, Abee T, Poolman B.

Mol Microbiol. 2014 May;92(4):813-23. doi: 10.1111/mmi.12591. Epub 2014 Apr 16.

47.

Regulation of acetate kinase isozymes and its importance for mixed-acid fermentation in Lactococcus lactis.

Puri P, Goel A, Bochynska A, Poolman B.

J Bacteriol. 2014 Apr;196(7):1386-93. doi: 10.1128/JB.01277-13. Epub 2014 Jan 24.

48.

Lactococcus lactis YfiA is necessary and sufficient for ribosome dimerization.

Puri P, Eckhardt TH, Franken LE, Fusetti F, Stuart MC, Boekema EJ, Kuipers OP, Kok J, Poolman B.

Mol Microbiol. 2014 Jan;91(2):394-407. doi: 10.1111/mmi.12468. Epub 2013 Dec 13.

49.

Evolved Escherichia coli strains for amplified, functional expression of membrane proteins.

Gul N, Linares DM, Ho FY, Poolman B.

J Mol Biol. 2014 Jan 9;426(1):136-49. doi: 10.1016/j.jmb.2013.09.009. Epub 2013 Sep 13.

PMID:
24041572
50.

Functional diversity of tandem substrate-binding domains in ABC transporters from pathogenic bacteria.

Fulyani F, Schuurman-Wolters GK, Zagar AV, Guskov A, Slotboom DJ, Poolman B.

Structure. 2013 Oct 8;21(10):1879-88. doi: 10.1016/j.str.2013.07.020. Epub 2013 Aug 29.

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