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Items: 1 to 50 of 82

1.

Characterization of thiosulfate reductase from Pyrobaculum aerophilum heterologously produced in Pyrococcus furiosus.

Haja DK, Wu CH, Poole FL 2nd, Sugar J, Williams SG, Jones AK, Adams MWW.

Extremophiles. 2019 Jul 5. doi: 10.1007/s00792-019-01112-9. [Epub ahead of print]

PMID:
31278423
2.

Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation.

Thorgersen MP, Ge X, Poole FL 2nd, Price MN, Arkin AP, Adams MWW.

Appl Environ Microbiol. 2019 Aug 14;85(17). pii: e00896-19. doi: 10.1128/AEM.00896-19. Print 2019 Sep 1.

PMID:
31253673
3.

The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis.

Scott IM, Rubinstein GM, Poole FL 2nd, Lipscomb GL, Schut GJ, Williams-Rhaesa AM, Stevenson DM, Amador-Noguez D, Kelly RM, Adams MWW.

J Biol Chem. 2019 Jun 21;294(25):9995-10005. doi: 10.1074/jbc.RA118.007120. Epub 2019 May 16.

PMID:
31097544
4.

Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.

Ge X, Vaccaro BJ, Thorgersen MP, Poole FL 2nd, Majumder EL, Zane GM, De León KB, Lancaster WA, Moon JW, Paradis CJ, von Netzer F, Stahl DA, Adams PD, Arkin AP, Wall JD, Hazen TC, Adams MWW.

Environ Microbiol. 2019 Jan;21(1):152-163. doi: 10.1111/1462-2920.14435. Epub 2018 Nov 21.

PMID:
30289197
5.

Characterization of membrane-bound sulfane reductase: A missing link in the evolution of modern day respiratory complexes.

Wu CH, Schut GJ, Poole FL 2nd, Haja DK, Adams MWW.

J Biol Chem. 2018 Oct 26;293(43):16687-16696. doi: 10.1074/jbc.RA118.005092. Epub 2018 Sep 4.

PMID:
30181217
6.

Native xylose-inducible promoter expands the genetic tools for the biomass-degrading, extremely thermophilic bacterium Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Awuku NK, Lipscomb GL, Poole FL, Rubinstein GM, Conway JM, Kelly RM, Adams MWW.

Extremophiles. 2018 Jul;22(4):629-638. doi: 10.1007/s00792-018-1023-x. Epub 2018 May 24.

PMID:
29797090
7.

The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate.

Poudel S, Giannone RJ, Basen M, Nookaew I, Poole FL 2nd, Kelly RM, Adams MWW, Hettich RL.

Biotechnol Biofuels. 2018 Mar 23;11:80. doi: 10.1186/s13068-018-1076-1. eCollection 2018.

8.

Mechanisms of Chromium and Uranium Toxicity in Pseudomonas stutzeri RCH2 Grown under Anaerobic Nitrate-Reducing Conditions.

Thorgersen MP, Lancaster WA, Ge X, Zane GM, Wetmore KM, Vaccaro BJ, Poole FL 2nd, Younkin AD, Deutschbauer AM, Arkin AP, Wall JD, Adams MWW.

Front Microbiol. 2017 Aug 10;8:1529. doi: 10.3389/fmicb.2017.01529. eCollection 2017.

9.

Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii.

Williams-Rhaesa AM, Poole FL 2nd, Dinsmore JT, Lipscomb GL, Rubinstein GM, Scott IM, Conway JM, Lee LL, Khatibi PA, Kelly RM, Adams MWW.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00444-17. doi: 10.1128/AEM.00444-17. Print 2017 Jul 15.

10.

Systems biology guided by XCMS Online metabolomics.

Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Ideker T, Majumder EL, Wall JD, Rattray NJW, Goodacre R, Lairson LL, Siuzdak G.

Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260. No abstract available.

11.

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

King AJ, Preheim SP, Bailey KL, Robeson MS 2nd, Roy Chowdhury T, Crable BR, Hurt RA Jr, Mehlhorn T, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, Lancaster WA, Poole F, Watson DB, W Fields M, Chandonia JM, Alm EJ, Zhou J, Adams MW, Hazen TC, Arkin AP, Elias DA.

Environ Sci Technol. 2017 Mar 7;51(5):2879-2889. doi: 10.1021/acs.est.6b04751. Epub 2017 Feb 10.

12.

A Highly Expressed High-Molecular-Weight S-Layer Complex of Pelosinus sp. Strain UFO1 Binds Uranium.

Thorgersen MP, Lancaster WA, Rajeev L, Ge X, Vaccaro BJ, Poole FL, Arkin AP, Mukhopadhyay A, Adams MWW.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e03044-16. doi: 10.1128/AEM.03044-16. Print 2017 Feb 15.

13.

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses.

Montenegro-Burke JR, Phommavongsay T, Aisporna AE, Huan T, Rinehart D, Forsberg E, Poole FL, Thorgersen MP, Adams MW, Krantz G, Fields MW, Northen TR, Robbins PD, Niedernhofer LJ, Lairson L, Benton HP, Siuzdak G.

Anal Chem. 2016 Oct 4;88(19):9753-9758. Epub 2016 Sep 15.

14.

Near-Complete Genome Sequence of Clostridium paradoxum Strain JW-YL-7.

Lancaster WA, Utturkar SM, Poole FL, Klingeman DM, Elias DA, Adams MW, Brown SD.

Genome Announc. 2016 May 5;4(3). pii: e00229-16. doi: 10.1128/genomeA.00229-16.

15.

Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.

Kurczy ME, Forsberg EM, Thorgersen MP, Poole FL 2nd, Benton HP, Ivanisevic J, Tran ML, Wall JD, Elias DA, Adams MW, Siuzdak G.

ACS Chem Biol. 2016 Jun 17;11(6):1677-85. doi: 10.1021/acschembio.6b00082. Epub 2016 Apr 8.

16.

Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses.

Vaccaro BJ, Thorgersen MP, Lancaster WA, Price MN, Wetmore KM, Poole FL 2nd, Deutschbauer A, Arkin AP, Adams MW.

Appl Environ Microbiol. 2015 Oct 9;82(1):51-61. doi: 10.1128/AEM.02602-15. Print 2016 Jan 1.

17.

A New Class of Tungsten-Containing Oxidoreductase in Caldicellulosiruptor, a Genus of Plant Biomass-Degrading Thermophilic Bacteria.

Scott IM, Rubinstein GM, Lipscomb GL, Basen M, Schut GJ, Rhaesa AM, Lancaster WA, Poole FL 2nd, Kelly RM, Adams MW.

Appl Environ Microbiol. 2015 Oct;81(20):7339-47. doi: 10.1128/AEM.01634-15. Epub 2015 Aug 14.

18.

Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments.

Thorgersen MP, Lancaster WA, Vaccaro BJ, Poole FL, Rocha AM, Mehlhorn T, Pettenato A, Ray J, Waters RJ, Melnyk RA, Chakraborty R, Hazen TC, Deutschbauer AM, Arkin AP, Adams MW.

Appl Environ Microbiol. 2015 Aug;81(15):4976-83. doi: 10.1128/AEM.00917-15. Epub 2015 May 15.

19.

Single gene insertion drives bioalcohol production by a thermophilic archaeon.

Basen M, Schut GJ, Nguyen DM, Lipscomb GL, Benn RA, Prybol CJ, Vaccaro BJ, Poole FL 2nd, Kelly RM, Adams MW.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17618-23. doi: 10.1073/pnas.1413789111. Epub 2014 Nov 3.

20.

Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes.

Pratt AJ, Shin DS, Merz GE, Rambo RP, Lancaster WA, Dyer KN, Borbat PP, Poole FL 2nd, Adams MW, Freed JH, Crane BR, Tainer JA, Getzoff ED.

Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):E4568-76. doi: 10.1073/pnas.1308531111. Epub 2014 Oct 14.

21.

Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.

Brown SD, Utturkar SM, Magnuson TS, Ray AE, Poole FL, Lancaster WA, Thorgersen MP, Adams MW, Elias DA.

Genome Announc. 2014 Sep 4;2(5). pii: e00881-14. doi: 10.1128/genomeA.00881-14.

22.

Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization.

Lancaster WA, Menon AL, Scott I, Poole FL, Vaccaro BJ, Thorgersen MP, Geller J, Hazen TC, Hurt RA Jr, Brown SD, Elias DA, Adams MW.

Metallomics. 2014 May;6(5):1004-13. doi: 10.1039/c4mt00050a.

PMID:
24706256
23.

Characterization of ten heterotetrameric NDP-dependent acyl-CoA synthetases of the hyperthermophilic archaeon Pyrococcus furiosus.

Scott JW, Poole FL, Adams MW.

Archaea. 2014 Feb 11;2014:176863. doi: 10.1155/2014/176863. eCollection 2014.

24.

Degradation of high loads of crystalline cellulose and of unpretreated plant biomass by the thermophilic bacterium Caldicellulosiruptor bescii.

Basen M, Rhaesa AM, Kataeva I, Prybol CJ, Scott IM, Poole FL, Adams MW.

Bioresour Technol. 2014;152:384-92. doi: 10.1016/j.biortech.2013.11.024. Epub 2013 Nov 19.

PMID:
24316482
25.

Evaluation of the effectiveness and cost-effectiveness of Families for Health V2 for the treatment of childhood obesity: study protocol for a randomized controlled trial.

Robertson W, Stewart-Brown S, Stallard N, Petrou S, Griffiths F, Thorogood M, Simkiss D, Lang R, Reddington K, Poole F, Rye G, Khan KA, Hamborg T, Kirby J.

Trials. 2013 Mar 20;14:81. doi: 10.1186/1745-6215-14-81.

26.

Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome.

Bridger SL, Lancaster WA, Poole FL 2nd, Schut GJ, Adams MW.

J Bacteriol. 2012 Aug;194(15):4097-106. doi: 10.1128/JB.00439-12. Epub 2012 May 25.

27.

Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass.

Blumer-Schuette SE, Giannone RJ, Zurawski JV, Ozdemir I, Ma Q, Yin Y, Xu Y, Kataeva I, Poole FL 2nd, Adams MW, Hamilton-Brehm SD, Elkins JG, Larimer FW, Land ML, Hauser LJ, Cottingham RW, Hettich RL, Kelly RM.

J Bacteriol. 2012 Aug;194(15):4015-28. doi: 10.1128/JB.00266-12. Epub 2012 May 25.

28.

Evaluation of diagnostic tests for infectious diseases: general principles.

TDR Diagnostics Evaluation Expert Panel, Banoo S, Bell D, Bossuyt P, Herring A, Mabey D, Poole F, Smith PG, Sriram N, Wongsrichanalai C, Linke R, O'Brien R, Perkins M, Cunningham J, Matsoso P, Nathanson CM, Olliaro P, Peeling RW, Ramsay A.

Nat Rev Microbiol. 2010 Dec;8(12 Suppl):S17-29. No abstract available.

PMID:
21548184
29.

A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data.

Lancaster WA, Praissman JL, Poole FL 2nd, Cvetkovic A, Menon AL, Scott JW, Jenney FE Jr, Thorgersen MP, Kalisiak E, Apon JV, Trauger SA, Siuzdak G, Tainer JA, Adams MW.

BMC Bioinformatics. 2011 Feb 28;12:64. doi: 10.1186/1471-2105-12-64.

30.

Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.

Dam P, Kataeva I, Yang SJ, Zhou F, Yin Y, Chou W, Poole FL 2nd, Westpheling J, Hettich R, Giannone R, Lewis DL, Kelly R, Gilbert HJ, Henrissat B, Xu Y, Adams MW.

Nucleic Acids Res. 2011 Apr;39(8):3240-54. doi: 10.1093/nar/gkq1281. Epub 2011 Jan 11.

31.

Microbial metalloproteomes are largely uncharacterized.

Cvetkovic A, Menon AL, Thorgersen MP, Scott JW, Poole FL 2nd, Jenney FE Jr, Lancaster WA, Praissman JL, Shanmukh S, Vaccaro BJ, Trauger SA, Kalisiak E, Apon JV, Siuzdak G, Yannone SM, Tainer JA, Adams MW.

Nature. 2010 Aug 5;466(7307):779-82. doi: 10.1038/nature09265. Epub 2010 Jul 18.

PMID:
20639861
32.

Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS).

Hura GL, Menon AL, Hammel M, Rambo RP, Poole FL 2nd, Tsutakawa SE, Jenney FE Jr, Classen S, Frankel KA, Hopkins RC, Yang SJ, Scott JW, Dillard BD, Adams MW, Tainer JA.

Nat Methods. 2009 Aug;6(8):606-12. doi: 10.1038/nmeth.1353. Epub 2009 Jul 20.

33.

Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.

Kataeva IA, Yang SJ, Dam P, Poole FL 2nd, Yin Y, Zhou F, Chou WC, Xu Y, Goodwin L, Sims DR, Detter JC, Hauser LJ, Westpheling J, Adams MW.

J Bacteriol. 2009 Jun;191(11):3760-1. doi: 10.1128/JB.00256-09. Epub 2009 Apr 3.

34.

Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome.

Menon AL, Poole FL 2nd, Cvetkovic A, Trauger SA, Kalisiak E, Scott JW, Shanmukh S, Praissman J, Jenney FE Jr, Wikoff WR, Apon JV, Siuzdak G, Adams MW.

Mol Cell Proteomics. 2009 Apr;8(4):735-51. doi: 10.1074/mcp.M800246-MCP200. Epub 2008 Nov 28.

35.

Evaluation of diagnostic tests for infectious diseases: general principles.

TDR Diagnostics Evaluation Expert Panel, Banoo S, Bell D, Bossuyt P, Herring A, Mabey D, Poole F, Smith PG, Sriram N, Wongsrichanalai C, Linke R, O'Brien R, Perkins M.

Nat Rev Microbiol. 2008 Nov;6(11 Suppl):S16-26. No abstract available.

PMID:
22745954
36.

Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile.

Trauger SA, Kalisak E, Kalisiak J, Morita H, Weinberg MV, Menon AL, Poole FL 2nd, Adams MW, Siuzdak G.

J Proteome Res. 2008 Mar;7(3):1027-35. doi: 10.1021/pr700609j. Epub 2008 Feb 2.

PMID:
18247545
37.

Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution.

Kelley LL, Dillard BD, Tempel W, Chen L, Shaw N, Lee D, Newton MG, Sugar FJ, Jenney FE Jr, Lee HS, Shah C, Poole FL 3rd, Adams MW, Richardson JS, Richardson DC, Liu ZJ, Wang BC, Rose J.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jul 1;63(Pt 7):549-52. Epub 2007 Jun 11.

38.

Evaluation of diagnostic tests for infectious diseases: general principles.

Banoo S, Bell D, Bossuyt P, Herring A, Mabey D, Poole F, Smith PG, Sriram N, Wongsrichanalai C, Linke R, O'Brien R, Perkins M, Cunningham J, Matsoso P, Nathanson CM, Olliaro P, Peeling RW, Ramsay A; TDR Diagnostics Evaluation Expert Panel.

Nat Rev Microbiol. 2006 Dec;4(12 Suppl):S20-32. No abstract available.

PMID:
17366684
39.

Operon prediction in Pyrococcus furiosus.

Tran TT, Dam P, Su Z, Poole FL 2nd, Adams MW, Zhou GT, Xu Y.

Nucleic Acids Res. 2007;35(1):11-20. Epub 2006 Dec 5.

40.

Evaluation of diagnostic tests for infectious diseases: general principles.

Banoo S, Bell D, Bossuyt P, Herring A, Mabey D, Poole F, Smith PG, Sriram N, Wongsrichanalai C, Linke R, O'Brien R, Perkins M, Cunningham J, Matsoso P, Nathanson CM, Olliaro P, Peeling RW, Ramsay A; TDR Diagnostics Evaluation Expert Panel (WHO/TDR) 2006.

Nat Rev Microbiol. 2006 Sep;4(9 Suppl):S21-31. No abstract available.

PMID:
17034069
41.

Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes.

Poole FL 2nd, Gerwe BA, Hopkins RC, Schut GJ, Weinberg MV, Jenney FE Jr, Adams MW.

J Bacteriol. 2005 Nov;187(21):7325-32.

42.

Protein production and crystallization at SECSG -- an overview.

Wang BC, Adams MW, Dailey H, DeLucas L, Luo M, Rose J, Bunzel R, Dailey T, Habel J, Horanyi P, Jenney FE Jr, Kataeva I, Lee HS, Li S, Li T, Lin D, Liu ZJ, Luan CH, Mayer M, Nagy L, Newton MG, Ng J, Poole FL 2nd, Shah A, Shah C, Sugar FJ, Xu H.

J Struct Funct Genomics. 2005;6(2-3):233-43.

PMID:
16211524
43.

Comparison of small- and large-scale expression of selected Pyrococcus furiosus genes as an aid to high-throughput protein production.

Sugar FJ, Jenney FE Jr, Poole FL 2nd, Brereton PS, Izumi M, Shah C, Adams MW.

J Struct Funct Genomics. 2005;6(2-3):149-58.

PMID:
16211512
44.

High-throughput production of Pyrococcus furiosus proteins: considerations for metalloproteins.

Jenney FE Jr, Brereton PS, Izumi M, Poole FL 2nd, Shah C, Sugar FJ, Lee HS, Adams MW.

J Synchrotron Radiat. 2005 Jan;12(Pt 1):8-12. Epub 2004 Dec 23.

PMID:
15616358
45.

Essential role of caffeoyl coenzyme A O-methyltransferase in lignin biosynthesis in woody poplar plants.

Zhong R, Morrison WH 3rd, Himmelsbach DS, Poole FL 2nd, Ye ZH.

Plant Physiol. 2000 Oct;124(2):563-78.

46.

The utility of traditional prehospital interventions in maintaining thermostasis.

Watts DD, Roche M, Tricarico R, Poole F, Brown JJ Jr, Colson GB, Trask AL, Fakhry SM.

Prehosp Emerg Care. 1999 Apr-Jun;3(2):115-22.

PMID:
10225643
47.

Review of a computer based telephone Helpline in an A&E department.

Srinivas S, Poole F, Redpath J, Underhill TJ.

J Accid Emerg Med. 1996 Sep;13(5):330-3.

48.

Look at the positive aspects of our work.

Poole FW.

Nurs Stand. 1995 Nov 22;10(9):41.

PMID:
27685404
49.

Personal control, social responsibility, and image of person and self among the Bimin-Kuskusmin of Papua New Guinea.

Poole FJ.

Int J Law Psychiatry. 1986;9(3):295-319. No abstract available.

PMID:
3793351
50.

Court damages: how a preexisting medical condition can affect a settlement.

Poole FT.

Occup Health (Lond). 1981 Jul;33(7):347-51. No abstract available.

PMID:
6911482

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