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Items: 36

1.

Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila.

Lange JD, Pool JE.

Genome Biol Evol. 2018 Aug 1;10(8):1882-1891. doi: 10.1093/gbe/evy142.

2.

Directional selection reduces developmental canalization against genetic and environmental perturbations in Drosophila wings.

Groth BR, Huang Y, Monette MJ, Pool JE.

Evolution. 2018 Jul 9. doi: 10.1111/evo.13550. [Epub ahead of print]

PMID:
29985527
3.

PopFly: the Drosophila population genomics browser.

Hervas S, Sanz E, Casillas S, Pool JE, Barbadilla A.

Bioinformatics. 2017 Sep 1;33(17):2779-2780. doi: 10.1093/bioinformatics/btx301.

PMID:
28472360
4.

Parallel Evolution of Cold Tolerance within Drosophila melanogaster.

Pool JE, Braun DT, Lack JB.

Mol Biol Evol. 2017 Feb 1;34(2):349-360. doi: 10.1093/molbev/msw232.

5.

A Thousand Fly Genomes: An Expanded Drosophila Genome Nexus.

Lack JB, Lange JD, Tang AD, Corbett-Detig RB, Pool JE.

Mol Biol Evol. 2016 Dec;33(12):3308-3313. Epub 2016 Sep 29.

6.

Genetic Mapping by Bulk Segregant Analysis in Drosophila: Experimental Design and Simulation-Based Inference.

Pool JE.

Genetics. 2016 Nov;204(3):1295-1306. doi: 10.1534/genetics.116.192484. Epub 2016 Sep 21.

7.

A Variable Genetic Architecture of Melanic Evolution in Drosophila melanogaster.

Bastide H, Lange JD, Lack JB, Yassin A, Pool JE.

Genetics. 2016 Nov;204(3):1307-1319. doi: 10.1534/genetics.116.192492. Epub 2016 Sep 16.

8.

Life history evolution and cellular mechanisms associated with increased size in high-altitude Drosophila.

Lack JB, Yassin A, Sprengelmeyer QD, Johanning EJ, David JR, Pool JE.

Ecol Evol. 2016 Jul 25;6(16):5893-906. doi: 10.1002/ece3.2327. eCollection 2016 Aug.

9.

The pdm3 Locus Is a Hotspot for Recurrent Evolution of Female-Limited Color Dimorphism in Drosophila.

Yassin A, Delaney EK, Reddiex AJ, Seher TD, Bastide H, Appleton NC, Lack JB, David JR, Chenoweth SF, Pool JE, Kopp A.

Curr Biol. 2016 Sep 26;26(18):2412-2422. doi: 10.1016/j.cub.2016.07.016. Epub 2016 Aug 18.

10.

A haplotype method detects diverse scenarios of local adaptation from genomic sequence variation.

Lange JD, Pool JE.

Mol Ecol. 2016 Jul;25(13):3081-100. doi: 10.1111/mec.13671. Epub 2016 Jun 6.

11.

Recurrent specialization on a toxic fruit in an island Drosophila population.

Yassin A, Debat V, Bastide H, Gidaszewski N, David JR, Pool JE.

Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4771-6. doi: 10.1073/pnas.1522559113. Epub 2016 Apr 4.

12.

Ancient balancing selection at tan underlies female colour dimorphism in Drosophila erecta.

Yassin A, Bastide H, Chung H, Veuille M, David JR, Pool JE.

Nat Commun. 2016 Jan 18;7:10400. doi: 10.1038/ncomms10400.

13.

The Power of Natural Variation for Model Organism Biology.

Gasch AP, Payseur BA, Pool JE.

Trends Genet. 2016 Mar;32(3):147-154. doi: 10.1016/j.tig.2015.12.003. Epub 2016 Jan 7. Review.

14.

Decanalization of wing development accompanied the evolution of large wings in high-altitude Drosophila.

Lack JB, Monette MJ, Johanning EJ, Sprengelmeyer QD, Pool JE.

Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):1014-9. doi: 10.1073/pnas.1515964113. Epub 2016 Jan 11.

15.
16.

Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa.

Fabian DK, Lack JB, Mathur V, Schlötterer C, Schmidt PS, Pool JE, Flatt T.

J Evol Biol. 2015 Apr;28(4):826-40. doi: 10.1111/jeb.12607. Epub 2015 Mar 13.

17.

The Drosophila genome nexus: a population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population.

Lack JB, Cardeno CM, Crepeau MW, Taylor W, Corbett-Detig RB, Stevens KA, Langley CH, Pool JE.

Genetics. 2015 Apr;199(4):1229-41. doi: 10.1534/genetics.115.174664. Epub 2015 Jan 27.

18.

Pigmentation in Drosophila melanogaster reaches its maximum in Ethiopia and correlates most strongly with ultra-violet radiation in sub-Saharan Africa.

Bastide H, Yassin A, Johanning EJ, Pool JE.

BMC Evol Biol. 2014 Aug 13;14:179. doi: 10.1186/s12862-014-0179-y.

19.

Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis.

Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16927-32. doi: 10.1073/pnas.1316009110. Epub 2013 Sep 30.

20.

Altitudinal clinal variation in wing size and shape in African Drosophila melanogaster: one cline or many?

Pitchers W, Pool JE, Dworkin I.

Evolution. 2013 Feb;67(2):438-52. doi: 10.1111/j.1558-5646.2012.01774.x. Epub 2012 Sep 7.

21.

Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture.

Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, Duchen P, Emerson JJ, Saelao P, Begun DJ, Langley CH.

PLoS Genet. 2012;8(12):e1003080. doi: 10.1371/journal.pgen.1003080. Epub 2012 Dec 20.

22.

Genomic variation in natural populations of Drosophila melanogaster.

Langley CH, Stevens K, Cardeno C, Lee YC, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, Song YS, Hahn MW, Begun DJ.

Genetics. 2012 Oct;192(2):533-98. doi: 10.1534/genetics.112.142018. Epub 2012 Jun 5.

23.

Measures of linkage disequilibrium among neighbouring SNPs indicate asymmetries across the house mouse hybrid zone.

Wang L, Luzynski K, Pool JE, Janoušek V, Dufková P, Vyskočilová MM, Teeter KC, Nachman MW, Munclinger P, Macholán M, Piálek J, Tucker PK.

Mol Ecol. 2011 Jul;20(14):2985-3000. doi: 10.1111/j.1365-294X.2011.05148.x. Epub 2011 Jun 11.

PMID:
21668551
24.

Sequencing of 50 human exomes reveals adaptation to high altitude.

Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, Xu X, Jiang H, Vinckenbosch N, Korneliussen TS, Zheng H, Liu T, He W, Li K, Luo R, Nie X, Wu H, Zhao M, Cao H, Zou J, Shan Y, Li S, Yang Q, Asan, Ni P, Tian G, Xu J, Liu X, Jiang T, Wu R, Zhou G, Tang M, Qin J, Wang T, Feng S, Li G, Huasang, Luosang J, Wang W, Chen F, Wang Y, Zheng X, Li Z, Bianba Z, Yang G, Wang X, Tang S, Gao G, Chen Y, Luo Z, Gusang L, Cao Z, Zhang Q, Ouyang W, Ren X, Liang H, Zheng H, Huang Y, Li J, Bolund L, Kristiansen K, Li Y, Zhang Y, Zhang X, Li R, Li S, Yang H, Nielsen R, Wang J, Wang J.

Science. 2010 Jul 2;329(5987):75-8. doi: 10.1126/science.1190371.

25.

Population genetic inference from genomic sequence variation.

Pool JE, Hellmann I, Jensen JD, Nielsen R.

Genome Res. 2010 Mar;20(3):291-300. doi: 10.1101/gr.079509.108. Epub 2010 Jan 12. Review.

26.

Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population.

Rebeiz M, Pool JE, Kassner VA, Aquadro CF, Carroll SB.

Science. 2009 Dec 18;326(5960):1663-7. doi: 10.1126/science.1178357.

27.

Inference of historical changes in migration rate from the lengths of migrant tracts.

Pool JE, Nielsen R.

Genetics. 2009 Feb;181(2):711-9. doi: 10.1534/genetics.108.098095. Epub 2008 Dec 15.

28.

The impact of founder events on chromosomal variability in multiply mating species.

Pool JE, Nielsen R.

Mol Biol Evol. 2008 Aug;25(8):1728-36. doi: 10.1093/molbev/msn124. Epub 2008 May 28.

29.

Population size changes reshape genomic patterns of diversity.

Pool JE, Nielsen R.

Evolution. 2007 Dec;61(12):3001-6. Epub 2007 Oct 30.

30.
31.

Phylogenetic incongruence in the Drosophila melanogaster species group.

Wong A, Jensen JD, Pool JE, Aquadro CF.

Mol Phylogenet Evol. 2007 Jun;43(3):1138-50. Epub 2006 Sep 9.

32.

History and structure of sub-Saharan populations of Drosophila melanogaster.

Pool JE, Aquadro CF.

Genetics. 2006 Oct;174(2):915-29. Epub 2006 Sep 1.

33.
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35.

An experiment on cognitive remediation of word-reading difficulty.

Das JP, Mishra RK, Pool JE.

J Learn Disabil. 1995 Feb;28(2):66-79.

PMID:
7884300
36.

Interpreting research results.

Russell DB, Pool JE.

Fam Med. 1991 Mar-Apr;23(3):169. No abstract available.

PMID:
2016004

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