Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 31

1.

Targeted Profiling of Arabidopsis thaliana Subproteomes Illuminates Co- and Posttranslationally N-Terminal Myristoylated Proteins.

Majeran W, Le Caer JP, Ponnala L, Meinnel T, Giglione C.

Plant Cell. 2018 Mar;30(3):543-562. doi: 10.1105/tpc.17.00523. Epub 2018 Feb 16.

2.

SPOP Mutation Drives Prostate Tumorigenesis In Vivo through Coordinate Regulation of PI3K/mTOR and AR Signaling.

Blattner M, Liu D, Robinson BD, Huang D, Poliakov A, Gao D, Nataraj S, Deonarine LD, Augello MA, Sailer V, Ponnala L, Ittmann M, Chinnaiyan AM, Sboner A, Chen Y, Rubin MA, Barbieri CE.

Cancer Cell. 2017 Mar 13;31(3):436-451. doi: 10.1016/j.ccell.2017.02.004.

3.

Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery.

Nishimura K, Apitz J, Friso G, Kim J, Ponnala L, Grimm B, van Wijk KJ.

Plant Cell. 2015 Oct;27(10):2677-91. doi: 10.1105/tpc.15.00574. Epub 2015 Sep 29.

4.

Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.

Kim J, Kimber MS, Nishimura K, Friso G, Schultz L, Ponnala L, van Wijk KJ.

Plant Cell. 2015 May;27(5):1477-96. doi: 10.1105/tpc.15.00106. Epub 2015 Apr 28.

5.

Transcriptional dynamics of Phytophthora infestans during sequential stages of hemibiotrophic infection of tomato.

Zuluaga AP, Vega-Arreguín JC, Fei Z, Ponnala L, Lee SJ, Matas AJ, Patev S, Fry WE, Rose JK.

Mol Plant Pathol. 2016 Jan;17(1):29-41. doi: 10.1111/mpp.12263. Epub 2015 May 8.

6.

MET1 is a thylakoid-associated TPR protein involved in photosystem II supercomplex formation and repair in Arabidopsis.

Bhuiyan NH, Friso G, Poliakov A, Ponnala L, van Wijk KJ.

Plant Cell. 2015 Jan;27(1):262-85. doi: 10.1105/tpc.114.132787. Epub 2015 Jan 13.

7.

Correlation of mRNA and protein abundance in the developing maize leaf.

Ponnala L, Wang Y, Sun Q, van Wijk KJ.

Plant J. 2014 May;78(3):424-40. doi: 10.1111/tpj.12482. Epub 2014 Apr 2.

8.

ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.

Nishimura K, Asakura Y, Friso G, Kim J, Oh SH, Rutschow H, Ponnala L, van Wijk KJ.

Plant Cell. 2013 Jun;25(6):2276-301. doi: 10.1105/tpc.113.112557. Epub 2013 Jun 28.

9.

Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.

Lundquist PK, Poliakov A, Giacomelli L, Friso G, Appel M, McQuinn RP, Krasnoff SB, Rowland E, Ponnala L, Sun Q, van Wijk KJ.

Plant Cell. 2013 May;25(5):1818-39. doi: 10.1105/tpc.113.111120. Epub 2013 May 14.

10.

Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis.

Kim J, Olinares PD, Oh SH, Ghisaura S, Poliakov A, Ponnala L, van Wijk KJ.

Plant Physiol. 2013 May;162(1):157-79. doi: 10.1104/pp.113.215699. Epub 2013 Apr 2.

11.

Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.).

Lin C, den Bakker HC, Suzuki H, Lefébure T, Ponnala L, Sun Q, Stanhope MJ, Wiedmann M, Duhamel GE.

Genome Announc. 2013 Jan;1(1). pii: e00215-12. doi: 10.1128/genomeA.00215-12. Epub 2013 Feb 21.

12.

Ontogeny of the maize shoot apical meristem.

Takacs EM, Li J, Du C, Ponnala L, Janick-Buckner D, Yu J, Muehlbauer GJ, Schnable PS, Timmermans MC, Sun Q, Nettleton D, Scanlon MJ.

Plant Cell. 2012 Aug;24(8):3219-34. Epub 2012 Aug 21.

13.

Strategies for transcriptome analysis in nonmodel plants.

Ward JA, Ponnala L, Weber CA.

Am J Bot. 2012 Feb;99(2):267-76. doi: 10.3732/ajb.1100334. Epub 2012 Feb 1. Review.

14.

Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.

Majeran W, Friso G, Asakura Y, Qu X, Huang M, Ponnala L, Watkins KP, Barkan A, van Wijk KJ.

Plant Physiol. 2012 Jan;158(1):156-89. doi: 10.1104/pp.111.188474. Epub 2011 Nov 7.

15.

Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation.

Matas AJ, Yeats TH, Buda GJ, Zheng Y, Chatterjee S, Tohge T, Ponnala L, Adato A, Aharoni A, Stark R, Fernie AR, Fei Z, Giovannoni JJ, Rose JK.

Plant Cell. 2011 Nov;23(11):3893-910. doi: 10.1105/tpc.111.091173. Epub 2011 Nov 1.

16.

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes).

Kukekova AV, Johnson JL, Teiling C, Li L, Oskina IN, Kharlamova AV, Gulevich RG, Padte R, Dubreuil MM, Vladimirova AV, Shepeleva DV, Shikhevich SG, Sun Q, Ponnala L, Temnykh SV, Trut LN, Acland GM.

BMC Genomics. 2011 Oct 3;12:482. doi: 10.1186/1471-2164-12-482.

17.

Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis.

Poliakov A, Russell CW, Ponnala L, Hoops HJ, Sun Q, Douglas AE, van Wijk KJ.

Mol Cell Proteomics. 2011 Jun;10(6):M110.007039. doi: 10.1074/mcp.M110.007039. Epub 2011 Mar 18.

18.

Detecting slow-translating regions in E.coli.

Ponnala L.

Int J Bioinform Res Appl. 2010;6(5):522-30.

PMID:
21224208
19.

Analysis of ultra low genome conservation in Clostridium difficile.

Scaria J, Ponnala L, Janvilisri T, Yan W, Mueller LA, Chang YF.

PLoS One. 2010 Dec 8;5(12):e15147. doi: 10.1371/journal.pone.0015147.

20.

Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.

Majeran W, Friso G, Ponnala L, Connolly B, Huang M, Reidel E, Zhang C, Asakura Y, Bhuiyan NH, Sun Q, Turgeon R, van Wijk KJ.

Plant Cell. 2010 Nov;22(11):3509-42. doi: 10.1105/tpc.110.079764. Epub 2010 Nov 16.

21.

The developmental dynamics of the maize leaf transcriptome.

Li P, Ponnala L, Gandotra N, Wang L, Si Y, Tausta SL, Kebrom TH, Provart N, Patel R, Myers CR, Reidel EJ, Turgeon R, Liu P, Sun Q, Nelson T, Brutnell TP.

Nat Genet. 2010 Dec;42(12):1060-7. doi: 10.1038/ng.703. Epub 2010 Oct 31.

PMID:
21037569
22.

A plausible role for the presence of internal shine-dalgarno sites.

Ponnala L.

Bioinform Biol Insights. 2010 Jun 28;4:55-60.

23.

Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae.

Ramsey JS, Rider DS, Walsh TK, De Vos M, Gordon KH, Ponnala L, Macmil SL, Roe BA, Jander G.

Insect Mol Biol. 2010 Mar;19 Suppl 2:155-64. doi: 10.1111/j.1365-2583.2009.00973.x.

PMID:
20482647
24.

Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Olinares PD, Ponnala L, van Wijk KJ.

Mol Cell Proteomics. 2010 Jul;9(7):1594-615. doi: 10.1074/mcp.M000038-MCP201. Epub 2010 Apr 26.

25.

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs.

Oliver HF, Orsi RH, Ponnala L, Keich U, Wang W, Sun Q, Cartinhour SW, Filiatrault MJ, Wiedmann M, Boor KJ.

BMC Genomics. 2009 Dec 30;10:641. doi: 10.1186/1471-2164-10-641.

26.

The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.

27.
28.

Microarray for molecular typing of Salmonella enterica serovars.

Scaria J, Palaniappan RU, Chiu D, Phan JA, Ponnala L, McDonough P, Grohn YT, Porwollik S, McClelland M, Chiou CS, Chu C, Chang YF.

Mol Cell Probes. 2008 Aug;22(4):238-43. doi: 10.1016/j.mcp.2008.04.002. Epub 2008 May 1.

29.

Analysis of free energy signals arising from nucleotide hybridization between rRNA and mRNA sequences during translation in eubacteria.

Ponnala L, Stomp AM, Bitzer DL, Vouk MA.

EURASIP J Bioinform Syst Biol. 2006:23613. doi: 10.1155/BSB/2006/23613.

30.

A computational model for reading frame maintenance.

Ponnala L, Bitzer DL, Stomp A, Vouk MA.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:4540-3.

PMID:
17946637
31.

The search for the optimal ribosome 3' tail end in E. coli.

Ponnala L, Barnes TM, Bitzer DL, Vouk M.

Conf Proc IEEE Eng Med Biol Soc. 2004;4:2824-7.

PMID:
17270865

Supplemental Content

Loading ...
Support Center