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Items: 13

1.

Xenbase: a genomic, epigenomic and transcriptomic model organism database.

Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD.

Nucleic Acids Res. 2018 Jan 4;46(D1):D861-D868. doi: 10.1093/nar/gkx936.

2.

Xenbase: Core features, data acquisition, and data processing.

James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD.

Genesis. 2015 Aug;53(8):486-97. doi: 10.1002/dvg.22873. Epub 2015 Jul 16.

3.

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.

Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D756-63. doi: 10.1093/nar/gku956. Epub 2014 Oct 13.

4.

Crim1 maintains retinal vascular stability during development by regulating endothelial cell Vegfa autocrine signaling.

Fan J, Ponferrada VG, Sato T, Vemaraju S, Fruttiger M, Gerhardt H, Ferrara N, Lang RA.

Development. 2014 Jan;141(2):448-59. doi: 10.1242/dev.097949. Epub 2013 Dec 18.

5.

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, Vize PD, Zorn AM.

J Biomed Semantics. 2013 Oct 18;4(1):31. doi: 10.1186/2041-1480-4-31.

6.

The Xenbase literature curation process.

Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD.

Database (Oxford). 2013 Jan 9;2013:bas046. doi: 10.1093/database/bas046. Print 2013.

7.

Xenbase: expansion and updates of the Xenopus model organism database.

James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D865-70. doi: 10.1093/nar/gks1025. Epub 2012 Nov 3.

8.

CRIM1 complexes with ß-catenin and cadherins, stabilizes cell-cell junctions and is critical for neural morphogenesis.

Ponferrada VG, Fan J, Vallance JE, Hu S, Mamedova A, Rankin SA, Kofron M, Zorn AM, Hegde RS, Lang RA.

PLoS One. 2012;7(3):e32635. doi: 10.1371/journal.pone.0032635. Epub 2012 Mar 12.

9.

A mutation in SLC24A1 implicated in autosomal-recessive congenital stationary night blindness.

Riazuddin SA, Shahzadi A, Zeitz C, Ahmed ZM, Ayyagari R, Chavali VR, Ponferrada VG, Audo I, Michiels C, Lancelot ME, Nasir IA, Zafar AU, Khan SN, Husnain T, Jiao X, MacDonald IM, Riazuddin S, Sieving PA, Katsanis N, Hejtmancik JF.

Am J Hum Genet. 2010 Oct 8;87(4):523-31. doi: 10.1016/j.ajhg.2010.08.013. Epub 2010 Sep 16.

10.
11.

High fidelity of homologous retroviral recombination in cell culture.

Bircher LA, Rigano JC, Ponferrada VG, Wooley DP.

Arch Virol. 2002 Sep;147(9):1665-83.

PMID:
12209308
12.

Differential modulation and subsequent blockade of mitogenic signaling and cell cycle progression by Pasteurella multocida toxin.

Wilson BA, Aminova LR, Ponferrada VG, Ho M.

Infect Immun. 2000 Aug;68(8):4531-8. Erratum in: Infect Immun 2001 Dec;69(12):7965.

13.

Localization of the intracellular activity domain of Pasteurella multocida toxin to the N terminus.

Wilson BA, Ponferrada VG, Vallance JE, Ho M.

Infect Immun. 1999 Jan;67(1):80-7.

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