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Items: 45

1.

Combined Proteomic and In Silico Target Identification Reveal a Role for 5-Lipoxygenase in Developmental Signaling Pathways.

Brand S, Roy S, Schröder P, Rathmer B, Roos J, Kapoor S, Patil S, Pommerenke C, Maier T, Janning P, Eberth S, Steinhilber D, Schade D, Schneider G, Kumar K, Ziegler S, Waldmann H.

Cell Chem Biol. 2018 Sep 20;25(9):1095-1106.e23. doi: 10.1016/j.chembiol.2018.05.016. Epub 2018 Jun 28.

PMID:
30251630
2.

RBFOX2 and alternative splicing in B-cell lymphoma.

Quentmeier H, Pommerenke C, Bernhart SH, Dirks WG, Hauer V, Hoffmann S, Nagel S, Siebert R, Uphoff CC, Zaborski M, Drexler HG; ICGC MMML-Seq Consortium.

Blood Cancer J. 2018 Aug 10;8(8):77. doi: 10.1038/s41408-018-0114-3. No abstract available.

3.

Retinoic acid-induced expression of Hnf1b and Fzd4 is required for pancreas development in Xenopus laevis.

Gere-Becker MB, Pommerenke C, Lingner T, Pieler T.

Development. 2018 Jun 8;145(12). pii: dev161372. doi: 10.1242/dev.161372.

4.

Aberrant expression of NKL homeobox gene HLX in Hodgkin lymphoma.

Nagel S, Pommerenke C, Meyer C, Kaufmann M, MacLeod RAF, Drexler HG.

Oncotarget. 2018 Feb 16;9(18):14338-14353. doi: 10.18632/oncotarget.24512. eCollection 2018 Mar 6.

5.

Hodgkin lymphoma cell lines: to separate the wheat from the chaff.

Drexler HG, Pommerenke C, Eberth S, Nagel S.

Biol Chem. 2018 May 24;399(6):511-523. doi: 10.1515/hsz-2017-0321. Review.

PMID:
29533902
6.

Effects of repeated long-term psychosocial stress and acute cannabinoid exposure on mouse corticostriatal circuitries: Implications for neuropsychiatric disorders.

Tomas-Roig J, Piscitelli F, Gil V, Quintana E, Ramió-Torrentà LL, Del Río JA, Moore TP, Agbemenyah H, Salinas G, Pommerenke C, Lorenzen S, Beißbarth T, Hoyer-Fender S, Di Marzo V, Havemann-Reinecke U.

CNS Neurosci Ther. 2018 Jun;24(6):528-538. doi: 10.1111/cns.12810. Epub 2018 Jan 31.

7.

A new ETV6-NTRK3 cell line model reveals MALAT1 as a novel therapeutic target - a short report.

Chen S, Nagel S, Schneider B, Dai H, Geffers R, Kaufmann M, Meyer C, Pommerenke C, Thress KS, Li J, Quentmeier H, Drexler HG, MacLeod RAF.

Cell Oncol (Dordr). 2018 Feb;41(1):93-101. doi: 10.1007/s13402-017-0356-2. Epub 2017 Nov 8.

PMID:
29119387
8.

Protein arginine methyltransferase 6 controls erythroid gene expression and differentiation of human CD34+ progenitor cells.

Herkt SC, Kuvardina ON, Herglotz J, Schneider L, Meyer A, Pommerenke C, Salinas-Riester G, Seifried E, Bonig H, Lausen J.

Haematologica. 2018 Jan;103(1):18-29. doi: 10.3324/haematol.2017.174516. Epub 2017 Oct 12.

9.

NKL homeobox gene MSX1 acts like a tumor suppressor in NK-cell leukemia.

Nagel S, Pommerenke C, Meyer C, Kaufmann M, MacLeod RAF, Drexler HG.

Oncotarget. 2017 Jun 21;8(40):66815-66832. doi: 10.18632/oncotarget.18609. eCollection 2017 Sep 15.

10.

Peripheral T-cell lymphoma cell line T8ML-1 highlights conspicuous targeting of PVRL2 by t(14;19)(q11.2;q13.3).

Ehrentraut S, Nagel S, Pommerenke C, Dirks WG, Quentmeier H, Kaufmann M, Meyer C, Zaborski M, Geffers R, Fujiwara H, Drexler HG, MacLeod RAF.

Haematologica. 2017 Sep;102(9):e356-e359. doi: 10.3324/haematol.2017.168203. Epub 2017 Jun 28. No abstract available.

11.

KDM3B shows tumor-suppressive activity and transcriptionally regulates HOXA1 through retinoic acid response elements in acute myeloid leukemia.

Xu X, Nagel S, Quentmeier H, Wang Z, Pommerenke C, Dirks WG, Macleod RAF, Drexler HG, Hu Z.

Leuk Lymphoma. 2018 Jan;59(1):204-213. doi: 10.1080/10428194.2017.1324156. Epub 2017 May 25.

PMID:
28540746
12.

NKL homeobox gene activities in hematopoietic stem cells, T-cell development and T-cell leukemia.

Nagel S, Pommerenke C, Scherr M, Meyer C, Kaufmann M, Battmer K, MacLeod RA, Drexler HG.

PLoS One. 2017 Feb 2;12(2):e0171164. doi: 10.1371/journal.pone.0171164. eCollection 2017.

13.

Identification of a tumor suppressor network in T-cell leukemia.

Nagel S, Pommerenke C, Meyer C, Kaufmann M, MacLeod RAF, Drexler HG.

Leuk Lymphoma. 2017 Sep;58(9):2196–2207. doi: 10.1080/10428194.2017.1283029. Epub 2017 Jan 31.

PMID:
28142295
14.

Diffuse Large B Cell Lymphoma Cell Line U-2946: Model for MCL1 Inhibitor Testing.

Quentmeier H, Drexler HG, Hauer V, MacLeod RA, Pommerenke C, Uphoff CC, Zaborski M, Berglund M, Enblad G, Amini RM.

PLoS One. 2016 Dec 1;11(12):e0167599. doi: 10.1371/journal.pone.0167599. eCollection 2016.

15.

Subclones in B-lymphoma cell lines: isogenic models for the study of gene regulation.

Quentmeier H, Pommerenke C, Ammerpohl O, Geffers R, Hauer V, MacLeod RA, Nagel S, Romani J, Rosati E, Rosén A, Uphoff CC, Zaborski M, Drexler HG.

Oncotarget. 2016 Sep 27;7(39):63456-63465. doi: 10.18632/oncotarget.11524.

16.

Deregulation of polycomb repressor complex 1 modifier AUTS2 in T-cell leukemia.

Nagel S, Pommerenke C, Meyer C, Kaufmann M, Drexler HG, MacLeod RA.

Oncotarget. 2016 Jul 19;7(29):45398-45413. doi: 10.18632/oncotarget.9982.

17.

Chromosome 11q23 aberrations activating FOXR1 in B-cell lymphoma.

Pommerenke C, Hauer V, Zaborski M, MacLeod RA, Nagel S, Amini RM, Berglund M, Geffers R, Drexler HG, Quentmeier H.

Blood Cancer J. 2016 Jun 10;6:e433. doi: 10.1038/bcj.2016.43. No abstract available.

18.

Enhanced whole exome sequencing by higher DNA insert lengths.

Pommerenke C, Geffers R, Bunk B, Bhuju S, Eberth S, Drexler HG, Quentmeier H.

BMC Genomics. 2016 May 25;17:399. doi: 10.1186/s12864-016-2698-y.

19.

Th17 cytokine differentiation and loss of plasticity after SOCS1 inactivation in a cutaneous T-cell lymphoma.

Ehrentraut S, Schneider B, Nagel S, Pommerenke C, Quentmeier H, Geffers R, Feist M, Kaufmann M, Meyer C, Kadin ME, Drexler HG, MacLeod RA.

Oncotarget. 2016 Jun 7;7(23):34201-16. doi: 10.18632/oncotarget.9077.

20.

TLR8 regulation of LILRA3 in monocytes is abrogated in human immunodeficiency virus infection and correlates to CD4 counts and virus loads.

Low HZ, Ahrenstorf G, Pommerenke C, Habermann N, Schughart K, Ordóñez D, Stripecke R, Wilk E, Witte T.

Retrovirology. 2016 Mar 12;13:15. doi: 10.1186/s12977-016-0248-y.

21.

Social defeat leads to changes in the endocannabinoid system: An overexpression of calreticulin and motor impairment in mice.

Tomas-Roig J, Piscitelli F, Gil V, Del Río JA, Moore TP, Agbemenyah H, Salinas-Riester G, Pommerenke C, Lorenzen S, Beißbarth T, Hoyer-Fender S, Di Marzo V, Havemann-Reinecke U.

Behav Brain Res. 2016 Apr 15;303:34-43. doi: 10.1016/j.bbr.2016.01.036. Epub 2016 Jan 24.

PMID:
26815100
22.

Short-Term Molecular Acclimation Processes of Legume Nodules to Increased External Oxygen Concentration.

Avenhaus U, Cabeza RA, Liese R, Lingner A, Dittert K, Salinas-Riester G, Pommerenke C, Schulze J.

Front Plant Sci. 2016 Jan 6;6:1133. doi: 10.3389/fpls.2015.01133. eCollection 2015.

23.

Genomic Landscape of Primary Mediastinal B-Cell Lymphoma Cell Lines.

Dai H, Ehrentraut S, Nagel S, Eberth S, Pommerenke C, Dirks WG, Geffers R, Kalavalapalli S, Kaufmann M, Meyer C, Faehnrich S, Chen S, Drexler HG, MacLeod RA.

PLoS One. 2015 Nov 23;10(11):e0139663. doi: 10.1371/journal.pone.0139663. eCollection 2015.

24.

Microarray analysis of circulating micro RNAs in the serum of patients with polymyositis and dermatomyositis reveals a distinct disease expression profile and is associated with disease activity.

Misunova M, Salinas-Riester G, Luthin S, Pommerenke C, Husakova M, Zavada J, Klein M, Plestilova L, Svitalkova T, Cepek P, Novota P, Vencovsky J.

Clin Exp Rheumatol. 2016 Jan-Feb;34(1):17-24. Epub 2015 Nov 17.

PMID:
26574749
25.

Global analysis of asymmetric RNA enrichment in oocytes reveals low conservation between closely related Xenopus species.

Claußen M, Lingner T, Pommerenke C, Opitz L, Salinas G, Pieler T.

Mol Biol Cell. 2015 Nov 1;26(21):3777-87. doi: 10.1091/mbc.E15-02-0115. Epub 2015 Sep 2.

26.

RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection.

Wilk E, Pandey AK, Leist SR, Hatesuer B, Preusse M, Pommerenke C, Wang J, Schughart K.

BMC Genomics. 2015 Sep 2;16:655. doi: 10.1186/s12864-015-1867-8.

27.

Next generation sequencing of sex-specific genes in the livers of obese ZSF1 rats.

Babelova A, Burckhardt BC, Salinas-Riester G, Pommerenke C, Burckhardt G, Henjakovic M.

Genomics. 2015 Oct;106(4):204-13. doi: 10.1016/j.ygeno.2015.07.006. Epub 2015 Jul 19.

28.

Destabilization of pluripotency in the absence of Mad2l2.

Pirouz M, Rahjouei A, Shamsi F, Eckermann KN, Salinas-Riester G, Pommerenke C, Kessel M.

Cell Cycle. 2015;14(10):1596-610. doi: 10.1080/15384101.2015.1026485.

29.

BCL6--regulated by AhR/ARNT and wild-type MEF2B--drives expression of germinal center markers MYBL1 and LMO2.

Ding J, Dirks WG, Ehrentraut S, Geffers R, MacLeod RA, Nagel S, Pommerenke C, Romani J, Scherr M, Vaas LA, Zaborski M, Drexler HG, Quentmeier H.

Haematologica. 2015 Jun;100(6):801-9. doi: 10.3324/haematol.2014.120048. Epub 2015 Mar 13.

30.

High-fat-diet-mediated dysbiosis promotes intestinal carcinogenesis independently of obesity.

Schulz MD, Atay C, Heringer J, Romrig FK, Schwitalla S, Aydin B, Ziegler PK, Varga J, Reindl W, Pommerenke C, Salinas-Riester G, Böck A, Alpert C, Blaut M, Polson SC, Brandl L, Kirchner T, Greten FR, Polson SW, Arkan MC.

Nature. 2014 Oct 23;514(7523):508-12. doi: 10.1038/nature13398. Epub 2014 Aug 31.

31.

RNA-seq transcriptome profiling reveals that Medicago truncatula nodules acclimate N₂ fixation before emerging P deficiency reaches the nodules.

Cabeza RA, Liese R, Lingner A, von Stieglitz I, Neumann J, Salinas-Riester G, Pommerenke C, Dittert K, Schulze J.

J Exp Bot. 2014 Nov;65(20):6035-48. doi: 10.1093/jxb/eru341. Epub 2014 Aug 23.

32.

An RNA sequencing transcriptome analysis reveals novel insights into molecular aspects of the nitrate impact on the nodule activity of Medicago truncatula.

Cabeza R, Koester B, Liese R, Lingner A, Baumgarten V, Dirks J, Salinas-Riester G, Pommerenke C, Dittert K, Schulze J.

Plant Physiol. 2014 Jan;164(1):400-11. doi: 10.1104/pp.113.228312. Epub 2013 Nov 27.

33.

Regulatory and metabolic networks for the adaptation of Pseudomonas aeruginosa biofilms to urinary tract-like conditions.

Tielen P, Rosin N, Meyer AK, Dohnt K, Haddad I, Jänsch L, Klein J, Narten M, Pommerenke C, Scheer M, Schobert M, Schomburg D, Thielen B, Jahn D.

PLoS One. 2013 Aug 13;8(8):e71845. doi: 10.1371/journal.pone.0071845. eCollection 2013.

34.

The relative composition of the inflammatory infiltrate as an additional tool for synovial tissue classification.

Della Beffa C, Slansky E, Pommerenke C, Klawonn F, Li J, Dai L, Schumacher HR Jr, Pessler F.

PLoS One. 2013 Aug 8;8(8):e72494. doi: 10.1371/journal.pone.0072494. eCollection 2013.

35.

Analysis of the lung transcriptome in Mycobacterium tuberculosis-infected mice reveals major differences in immune response pathways between TB-susceptible and resistant hosts.

Shepelkova G, Pommerenke C, Alberts R, Geffers R, Evstifeev V, Apt A, Schughart K, Wilk E.

Tuberculosis (Edinb). 2013 Mar;93(2):263-9. doi: 10.1016/j.tube.2012.11.007. Epub 2012 Dec 29.

PMID:
23276693
36.

Global transcriptome analysis in influenza-infected mouse lungs reveals the kinetics of innate and adaptive host immune responses.

Pommerenke C, Wilk E, Srivastava B, Schulze A, Novoselova N, Geffers R, Schughart K.

PLoS One. 2012;7(7):e41169. doi: 10.1371/journal.pone.0041169. Epub 2012 Jul 17.

37.

Expression QTL mapping in regulatory and helper T cells from the BXD family of strains reveals novel cell-specific genes, gene-gene interactions and candidate genes for auto-immune disease.

Alberts R, Chen H, Pommerenke C, Smit AB, Spijker S, Williams RW, Geffers R, Bruder D, Schughart K.

BMC Genomics. 2011 Dec 19;12:610. doi: 10.1186/1471-2164-12-610.

38.

Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection.

Dimitrakopoulou K, Tsimpouris C, Papadopoulos G, Pommerenke C, Wilk E, Sgarbas KN, Schughart K, Bezerianos A.

J Clin Bioinforma. 2011 Oct 21;1:27. doi: 10.1186/2043-9113-1-27.

39.

Global genotype-phenotype correlations in Pseudomonas aeruginosa.

Pommerenke C, Müsken M, Becker T, Dötsch A, Klawonn F, Häussler S.

PLoS Pathog. 2010 Aug 26;6(8):e1001074. doi: 10.1371/journal.ppat.1001074.

40.

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M.

ISME J. 2010 Jan;4(1):61-77. doi: 10.1038/ismej.2009.94. Epub 2009 Sep 10.

PMID:
19741735
41.

Genomewide identification of genetic determinants of antimicrobial drug resistance in Pseudomonas aeruginosa.

Dötsch A, Becker T, Pommerenke C, Magnowska Z, Jänsch L, Häussler S.

Antimicrob Agents Chemother. 2009 Jun;53(6):2522-31. doi: 10.1128/AAC.00035-09. Epub 2009 Mar 30.

42.

Evaluation of a microarray-hybridization based method applicable for discovery of single nucleotide polymorphisms (SNPs) in the Pseudomonas aeruginosa genome.

Dötsch A, Pommerenke C, Bredenbruch F, Geffers R, Häussler S.

BMC Genomics. 2009 Jan 19;10:29. doi: 10.1186/1471-2164-10-29.

43.

ROSY--a flexible and universal database and bioinformatics tool platform for Roseobacter related species.

Pommerenke C, Gabriel I, Bunk B, Münch R, Haddad I, Tielen P, Wagner-Döbler I, Jahn D.

In Silico Biol. 2008;8(2):177-86.

PMID:
18928204
44.

ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks.

Klein J, Leupold S, Münch R, Pommerenke C, Johl T, Kärst U, Jänsch L, Jahn D, Retter I.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W460-4. doi: 10.1093/nar/gkn217. Epub 2008 Apr 25.

45.

[The microlaryngeal tube--a new tube for direct laryngoscopy in the ENT field].

Pommerenke C, Lipp M, Collo J.

Anaesthesist. 1989 Mar;38(3):144-6. German.

PMID:
2719228

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