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Items: 12


CNEr: A toolkit for exploring extreme noncoding conservation.

Tan G, Polychronopoulos D, Lenhard B.

PLoS Comput Biol. 2019 Aug 26;15(8):e1006940. doi: 10.1371/journal.pcbi.1006940. eCollection 2019 Aug.


Introduction of 'Generalized Genomic Signatures' for the quantification of neighbour preferences leads to taxonomy- and functionality-based distinction among sequences.

Apostolou-Karampelis K, Polychronopoulos D, Almirantis Y.

Sci Rep. 2019 Feb 8;9(1):1700. doi: 10.1038/s41598-018-38157-3.


CNEFinder: finding conserved non-coding elements in genomes.

Ayad LAK, Pissis SP, Polychronopoulos D.

Bioinformatics. 2018 Sep 1;34(17):i743-i747. doi: 10.1093/bioinformatics/bty601.


Conserved non-coding elements: developmental gene regulation meets genome organization.

Polychronopoulos D, King JWD, Nash AJ, Tan G, Lenhard B.

Nucleic Acids Res. 2017 Dec 15;45(22):12611-12624. doi: 10.1093/nar/gkx1074. Review.


On avoided words, absent words, and their application to biological sequence analysis.

Almirantis Y, Charalampopoulos P, Gao J, Iliopoulos CS, Mohamed M, Pissis SP, Polychronopoulos D.

Algorithms Mol Biol. 2017 Mar 14;12:5. doi: 10.1186/s13015-017-0094-z. eCollection 2017.


Fractality and entropic scaling in the chromosomal distribution of conserved noncoding elements in the human genome.

Polychronopoulos D, Athanasopoulou L, Almirantis Y.

Gene. 2016 Jun 15;584(2):148-60. doi: 10.1016/j.gene.2016.02.022. Epub 2016 Feb 17.


An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.

Tsatsaronis G, Balikas G, Malakasiotis P, Partalas I, Zschunke M, Alvers MR, Weissenborn D, Krithara A, Petridis S, Polychronopoulos D, Almirantis Y, Pavlopoulos J, Baskiotis N, Gallinari P, ArtiƩres T, Ngomo AC, Heino N, Gaussier E, Barrio-Alvers L, Schroeder M, Androutsopoulos I, Paliouras G.

BMC Bioinformatics. 2015 Apr 30;16:138. doi: 10.1186/s12859-015-0564-6.


Classification of selectively constrained DNA elements using feature vectors and rule-based classifiers.

Polychronopoulos D, Weitschek E, Dimitrieva S, Bucher P, Felici G, Almirantis Y.

Genomics. 2014 Aug;104(2):79-86. doi: 10.1016/j.ygeno.2014.07.004. Epub 2014 Jul 22.


Conserved noncoding elements follow power-law-like distributions in several genomes as a result of genome dynamics.

Polychronopoulos D, Sellis D, Almirantis Y.

PLoS One. 2014 May 2;9(5):e95437. doi: 10.1371/journal.pone.0095437. eCollection 2014.


Giant scrotal lipoma.

Sakorafas GH, Polychronopoulos D.

Eur J Cancer Care (Engl). 2010 Jul;19(4):e5. doi: 10.1111/j.1365-2354.2008.00986.x. Epub 2009 Nov 11. No abstract available.


A key role for Ctf4 in coupling the MCM2-7 helicase to DNA polymerase alpha within the eukaryotic replisome.

Gambus A, van Deursen F, Polychronopoulos D, Foltman M, Jones RC, Edmondson RD, Calzada A, Labib K.

EMBO J. 2009 Oct 7;28(19):2992-3004. doi: 10.1038/emboj.2009.226. Epub 2009 Aug 6.


Primary transitional cell carcinoma of anterior male urethra: a rare case.

Pikramenos D, Stavropoulos NI, Polychronopoulos D, Demonakou M, Kostakopoulos A.

Acta Urol Belg. 1991;59(3):109-11.


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