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Items: 39

1.

Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility.

Porto BN, Caixeta ET, Mathioni SM, Vidigal PMP, Zambolim L, Zambolim EM, Donofrio N, Polson SW, Maia TA, Chen C, Adetunji M, Kingham B, Dalio RJD, Resende MLV.

PLoS One. 2019 Apr 18;14(4):e0215598. doi: 10.1371/journal.pone.0215598. eCollection 2019.

2.

CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes.

Nasko DJ, Ferrell BD, Moore RM, Bhavsar JD, Polson SW, Wommack KE.

MBio. 2019 Mar 5;10(2). pii: e02651-18. doi: 10.1128/mBio.02651-18.

3.

Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton.

Harrison AO, Moore RM, Polson SW, Wommack KE.

Front Microbiol. 2019 Feb 5;10:134. doi: 10.3389/fmicb.2019.00134. eCollection 2019.

4.

Complete Genome Sequence of Microbacterium sp. Strain 10M-3C3, Isolated from an Extremely Phosphorus-Poor Lake.

Hempel P, Keffer JL, Shevchenko O, Henny C, Polson SW, Maresca JA.

Microbiol Resour Announc. 2019 Jan 24;8(4). pii: e01649-18. doi: 10.1128/MRA.01649-18. eCollection 2019 Jan.

5.

Light Modulates the Physiology of Nonphototrophic Actinobacteria.

Maresca JA, Keffer JL, Hempel PP, Polson SW, Shevchenko O, Bhavsar J, Powell D, Miller KJ, Singh A, Hahn MW.

J Bacteriol. 2019 Apr 24;201(10). pii: e00740-18. doi: 10.1128/JB.00740-18. Print 2019 May 15.

PMID:
30692175
6.

Identification of Chondrocyte Genes and Signaling Pathways in Response to Acute Joint Inflammation.

Lv M, Zhou Y, Polson SW, Wan LQ, Wang M, Han L, Wang L, Lu XL.

Sci Rep. 2019 Jan 14;9(1):93. doi: 10.1038/s41598-018-36500-2.

7.

Whole-Genome Sequences of Two Pseudoalteromonas piscicida Strains, DE1-A and DE2-A, with Strong Antibacterial Activity against Vibrio vulnificus.

Richards GP, Needleman DS, Watson MA, Polson SW.

Microbiol Resour Announc. 2019 Jan 3;8(1). pii: e01451-18. doi: 10.1128/MRA.01451-18. eCollection 2019 Jan.

8.

Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton.

Nasko DJ, Chopyk J, Sakowski EG, Ferrell BD, Polson SW, Wommack KE.

Front Microbiol. 2018 Dec 14;9:3053. doi: 10.3389/fmicb.2018.03053. eCollection 2018.

9.

Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology.

Marine RL, Nasko DJ, Wray J, Polson SW, Wommack KE.

ISME J. 2017 Nov;11(11):2479-2491. doi: 10.1038/ismej.2017.102. Epub 2017 Jul 21.

10.

Phased Genotyping-by-Sequencing Enhances Analysis of Genetic Diversity and Reveals Divergent Copy Number Variants in Maize.

Manching H, Sengupta S, Hopper KR, Polson SW, Ji Y, Wisser RJ.

G3 (Bethesda). 2017 Jul 5;7(7):2161-2170. doi: 10.1534/g3.117.042036.

11.

Genotyping-by-Sequencing to Predict Resistance to Lima Bean Downy Mildew in a Diversity Panel.

Mhora TT, Ernest EG, Wisser RJ, Evans TA, Patzoldt ME, Gregory NF, Westhafer SE, Polson SW, Donofrio NM.

Phytopathology. 2016 Oct;106(10):1152-1158. Epub 2016 Aug 22.

12.

Computational clustering for viral reference proteomes.

Chen C, Huang H, Mazumder R, Natale DA, McGarvey PB, Zhang J, Polson SW, Wang Y, Wu CH; UniProt Consortium.

Bioinformatics. 2016 Jul 1;32(13):2041-3. doi: 10.1093/bioinformatics/btw110. Epub 2016 Feb 26.

13.

Polygenic inheritance of cryptorchidism susceptibility in the LE/orl rat.

Barthold JS, Pugarelli J, MacDonald ML, Ren J, Adetunji MO, Polson SW, Mateson A, Wang Y, Sol-Church K, McCahan SM, Akins RE Jr, Devoto M, Robbins AK.

Mol Hum Reprod. 2016 Jan;22(1):18-34. doi: 10.1093/molehr/gav060. Epub 2015 Oct 26.

14.

Draft Genome Sequence of a Natural Root Isolate, Bacillus subtilis UD1022, a Potential Plant Growth-Promoting Biocontrol Agent.

Bishnoi U, Polson SW, Sherrier DJ, Bais HP.

Genome Announc. 2015 Jul 9;3(4). pii: e00696-15. doi: 10.1128/genomeA.00696-15.

15.

An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.

Crowgey EL, Stabley DL, Chen C, Huang H, Robbins KM, Polson SW, Sol-Church K, Wu CH.

J Biomol Tech. 2015 Apr;26(1):19-28. doi: 10.7171/jbt.15-2601-002.

16.
17.

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses.

Sakowski EG, Munsell EV, Hyatt M, Kress W, Williamson SJ, Nasko DJ, Polson SW, Wommack KE.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15786-91. doi: 10.1073/pnas.1401322111. Epub 2014 Oct 13.

18.

SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes.

Wyffels J, King BL, Vincent J, Chen C, Wu CH, Polson SW.

F1000Res. 2014 Aug 12;3:191. doi: 10.12688/f1000research.4996.1. eCollection 2014.

19.

High-fat-diet-mediated dysbiosis promotes intestinal carcinogenesis independently of obesity.

Schulz MD, Atay C, Heringer J, Romrig FK, Schwitalla S, Aydin B, Ziegler PK, Varga J, Reindl W, Pommerenke C, Salinas-Riester G, Böck A, Alpert C, Blaut M, Polson SC, Brandl L, Kirchner T, Greten FR, Polson SW, Arkan MC.

Nature. 2014 Oct 23;514(7523):508-12. doi: 10.1038/nature13398. Epub 2014 Aug 31.

20.

Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum.

Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC.

Genome Announc. 2014 Apr 3;2(2). pii: e00226-14. doi: 10.1128/genomeA.00226-14.

21.

Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493.

Kalburge SS, Polson SW, Boyd Crotty K, Katz L, Turnsek M, Tarr CL, Martinez-Urtaza J, Boyd EF.

Genome Announc. 2014 Mar 13;2(2). pii: e00159-14. doi: 10.1128/genomeA.00159-14.

22.

Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome.

Marine R, McCarren C, Vorrasane V, Nasko D, Crowgey E, Polson SW, Wommack KE.

Microbiome. 2014 Jan 30;2(1):3. doi: 10.1186/2049-2618-2-3.

23.

No-boundary thinking in bioinformatics research.

Huang X, Bruce B, Buchan A, Congdon CB, Cramer CL, Jennings SF, Jiang H, Li Z, McClure G, McMullen R, Moore JH, Nanduri B, Peckham J, Perkins A, Polson SW, Rekepalli B, Salem S, Specker J, Wunsch D, Xiong D, Zhang S, Zhao Z.

BioData Min. 2013 Nov 6;6(1):19. doi: 10.1186/1756-0381-6-19.

24.

Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton.

Schmidt HF, Sakowski EG, Williamson SJ, Polson SW, Wommack KE.

ISME J. 2014 Jan;8(1):103-14. doi: 10.1038/ismej.2013.124. Epub 2013 Aug 29.

25.

Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities.

Campbell BJ, Polson SW, Zeigler Allen L, Williamson SJ, Lee CK, Wommack KE, Cary SC.

Front Microbiol. 2013 Jul 24;4:182. doi: 10.3389/fmicb.2013.00182. eCollection 2013.

26.

VIROME: a standard operating procedure for analysis of viral metagenome sequences.

Wommack KE, Bhavsar J, Polson SW, Chen J, Dumas M, Srinivasiah S, Furman M, Jamindar S, Nasko DJ.

Stand Genomic Sci. 2012 Jul 30;6(3):427-39. doi: 10.4056/sigs.2945050. Epub 2012 Jul 27.

27.

Evaluation of two approaches for assessing the genetic similarity of virioplankton populations as defined by genome size.

Jamindar S, Polson SW, Srinivasiah S, Waidner L, Wommack KE.

Appl Environ Microbiol. 2012 Dec;78(24):8773-83. doi: 10.1128/AEM.02432-12. Epub 2012 Oct 12.

28.

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC.

PLoS One. 2012;7(9):e44224. doi: 10.1371/journal.pone.0044224. Epub 2012 Sep 6.

29.

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees.

Wang Q, Arighi CN, King BL, Polson SW, Vincent J, Chen C, Huang H, Kingham BF, Page ST, Rendino MF, Thomas WK, Udwary DW, Wu CH; North East Bioinformatics Collaborative Curation Team.

Database (Oxford). 2012 Mar 20;2012:bar064. doi: 10.1093/database/bar064. Print 2012.

30.

Profiling conserved microRNA expression in recombinant CHO cell lines using Illumina sequencing.

Hammond S, Swanberg JC, Polson SW, Lee KH.

Biotechnol Bioeng. 2012 Jun;109(6):1371-5. doi: 10.1002/bit.24415. Epub 2012 Jan 23.

31.

Impacts of poultry house environment on poultry litter bacterial community composition.

Dumas MD, Polson SW, Ritter D, Ravel J, Gelb J Jr, Morgan R, Wommack KE.

PLoS One. 2011;6(9):e24785. doi: 10.1371/journal.pone.0024785. Epub 2011 Sep 16.

32.

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA.

Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE.

Appl Environ Microbiol. 2011 Nov;77(22):8071-9. doi: 10.1128/AEM.05610-11. Epub 2011 Sep 23.

33.

Unraveling the viral tapestry (from inside the capsid out).

Polson SW, Wilhelm SW, Wommack KE.

ISME J. 2011 Feb;5(2):165-8. doi: 10.1038/ismej.2010.81. Epub 2010 Jun 17. No abstract available. Erratum in: ISME J. 2011 Feb;5(2):366.

34.

The effect of nutrient deposition on bacterial communities in Arctic tundra soil.

Campbell BJ, Polson SW, Hanson TE, Mack MC, Schuur EA.

Environ Microbiol. 2010 Jul;12(7):1842-54. doi: 10.1111/j.1462-2920.2010.02189.x. Epub 2010 Mar 7.

PMID:
20236166
35.

Functional viral metagenomics and the next generation of molecular tools.

Schoenfeld T, Liles M, Wommack KE, Polson SW, Godiska R, Mead D.

Trends Microbiol. 2010 Jan;18(1):20-9. doi: 10.1016/j.tim.2009.10.001. Epub 2009 Nov 5. Review.

36.

Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals.

Cervino JM, Hayes RL, Polson SW, Polson SC, Goreau TJ, Martinez RJ, Smith GW.

Appl Environ Microbiol. 2004 Nov;70(11):6855-64.

37.

Aurantimonas coralicida gen. nov., sp. nov., the causative agent of white plague type II on Caribbean scleractinian corals.

Denner EB, Smith GW, Busse HJ, Schumann P, Narzt T, Polson SW, Lubitz W, Richardson LL.

Int J Syst Evol Microbiol. 2003 Jul;53(Pt 4):1115-22.

PMID:
12892136
38.

The etiology of white pox, a lethal disease of the Caribbean elkhorn coral, Acropora palmata.

Patterson KL, Porter JW, Ritchie KB, Polson SW, Mueller E, Peters EC, Santavy DL, Smith GW.

Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8725-30. Epub 2002 Jun 19.

39.

Molecular diversity of diazotrophs in oligotrophic tropical seagrass bed communities.

Bagwell CE, Rocque JR, Smith GW, Polson SW, Friez MJ, Longshore JW, Lovell CR.

FEMS Microbiol Ecol. 2002 Feb 1;39(2):113-9. doi: 10.1111/j.1574-6941.2002.tb00912.x.

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