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Chlamydial infection and on-farm risk factors in dairy cattle herds in South East Queensland.

Anstey SI, Quigley BL, Polkinghorne A, Jelocnik M.

Aust Vet J. 2019 Dec;97(12):505-508. doi: 10.1111/avj.12879. Epub 2019 Oct 7.


Multilocus Sequence Typing (MLST) of Chlamydiales.

Jelocnik M, Polkinghorne A, Pannekoek Y.

Methods Mol Biol. 2019;2042:69-86. doi: 10.1007/978-1-4939-9694-0_7.


Retrospective study of canine infectious haemolytic anaemia cases reveals the importance of molecular investigation in accurate postmortal diagnostic protocols.

Beck A, Huber D, Antolić M, Anzulović Ž, Reil I, Polkinghorne A, Baneth G, Beck R.

Comp Immunol Microbiol Infect Dis. 2019 Aug;65:81-87. doi: 10.1016/j.cimid.2019.05.006. Epub 2019 May 9.


Isolation, marine transgression and translocation of the bare-nosed wombat (Vombatus ursinus).

Martin A, Carver S, Proft K, Fraser TA, Polkinghorne A, Banks S, Burridge CP.

Evol Appl. 2019 Mar 21;12(6):1114-1123. doi: 10.1111/eva.12785. eCollection 2019 Jun.


Detection of Chlamydiaceae in ocular swabs from Australian pre-export feedlot sheep.

Jelocnik M, Laurence M, Murdoch FR, Polkinghorne A.

Aust Vet J. 2019 Oct;97(10):401-403. doi: 10.1111/avj.12857. Epub 2019 Jul 8.


Prevalence and clinical significance of koala retrovirus in two South Australian koala (Phascolarctos cinereus) populations.

Fabijan J, Miller D, Olagoke O, Woolford L, Boardman W, Timms P, Polkinghorne A, Simmons G, Hemmatzadeh F, Trott DJ, Speight KN.

J Med Microbiol. 2019 Jul;68(7):1072-1080. doi: 10.1099/jmm.0.001009. Epub 2019 Jun 4.


In vitro analysis of genetically distinct Chlamydia pecorum isolates reveals key growth differences in mammalian epithelial and immune cells.

Islam MM, Jelocnik M, Anstey S, Kaltenboeck B, Borel N, Timms P, Polkinghorne A.

Vet Microbiol. 2019 May;232:22-29. doi: 10.1016/j.vetmic.2019.03.024. Epub 2019 Mar 31.


Chlamydia pecorum prevalence in South Australian koala (Phascolarctos cinereus) populations: Identification and modelling of a population free from infection.

Fabijan J, Caraguel C, Jelocnik M, Polkinghorne A, Boardman WSJ, Nishimoto E, Johnsson G, Molsher R, Woolford L, Timms P, Simmons G, Hemmatzadeh F, Trott DJ, Speight N.

Sci Rep. 2019 Apr 18;9(1):6261. doi: 10.1038/s41598-019-42702-z.


Detection of a range of genetically diverse chlamydiae in Australian domesticated and wild ungulates.

Jelocnik M, Taylor-Brown A, O'Dea C, Anstey S, Bommana S, Masters N, Katouli M, Jenkins C, Polkinghorne A.

Transbound Emerg Dis. 2019 May;66(3):1132-1137. doi: 10.1111/tbed.13171. Epub 2019 Apr 3.


The limitations of commercial serological assays for detection of chlamydial infections in Australian livestock.

Bommana S, Jelocnik M, Borel N, Marsh I, Carver S, Polkinghorne A.

J Med Microbiol. 2019 Apr;68(4):627-632. doi: 10.1099/jmm.0.000951. Epub 2019 Mar 6.


Identification of A Novel Picorna-Like Virus, Burpengary Virus, that is Negatively Associated with Chlamydial Disease in the Koala.

Harvey E, Madden D, Polkinghorne A, Holmes EC.

Viruses. 2019 Mar 2;11(3). pii: E211. doi: 10.3390/v11030211.


Mini Review: Antimicrobial Control of Chlamydial Infections in Animals: Current Practices and Issues.

Bommana S, Polkinghorne A.

Front Microbiol. 2019 Feb 4;10:113. doi: 10.3389/fmicb.2019.00113. eCollection 2019.


The impact of human activities on Australian wildlife.

Taylor-Brown A, Booth R, Gillett A, Mealy E, Ogbourne SM, Polkinghorne A, Conroy GC.

PLoS One. 2019 Jan 23;14(1):e0206958. doi: 10.1371/journal.pone.0206958. eCollection 2019.


New evidence for domesticated animals as reservoirs of Chlamydia-associated community-acquired pneumonia.

Polkinghorne A, Borel N, Heijne M, Pannekoek Y.

Clin Microbiol Infect. 2019 Feb;25(2):131-132. doi: 10.1016/j.cmi.2018.10.015. Epub 2018 Oct 28. No abstract available.


Chlamydia pecorum gastrointestinal tract infection associations with urogenital tract infections in the koala (Phascolarctos cinereus).

Phillips S, Robbins A, Loader J, Hanger J, Booth R, Jelocnik M, Polkinghorne A, Timms P.

PLoS One. 2018 Nov 1;13(11):e0206471. doi: 10.1371/journal.pone.0206471. eCollection 2018.


Seroprevalence of vector-borne pathogens in dogs from Croatia.

Jurković D, Beck A, Huber D, Mihaljević Ž, Polkinghorne A, Martinković F, Lukačević D, Pilat M, Brezak R, Bosnić S, Beck R.

Parasitol Res. 2019 Jan;118(1):347-352. doi: 10.1007/s00436-018-6129-7. Epub 2018 Oct 31.


Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae.

Taylor-Brown A, Pillonel T, Greub G, Vaughan L, Nowak B, Polkinghorne A.

Genome Biol Evol. 2018 Oct 1;10(10):2587-2595. doi: 10.1093/gbe/evy195.


Expanded Molecular Typing of Sarcoptes scabiei Provides Further Evidence of Disease Spillover Events in the Epidemiology of Sarcoptic Mange in Australian Marsupials.

Fraser TA, Holme R, Martin A, Whiteley P, Montarello M, Raw C, Carver S, Polkinghorne A.

J Wildl Dis. 2019 Jan;55(1):231-237. doi: 10.7589/2018-04-101. Epub 2018 Aug 10.


A Sarcoptes scabiei specific isothermal amplification assay for detection of this important ectoparasite of wombats and other animals.

Fraser TA, Carver S, Martin AM, Mounsey K, Polkinghorne A, Jelocnik M.

PeerJ. 2018 Jul 27;6:e5291. doi: 10.7717/peerj.5291. eCollection 2018.


Cloacal and Ocular Microbiota of the Endangered Australian Northern Quoll.

Burke C, Burnard D, Polkinghorne A, Webb J, Huston WM.

Microorganisms. 2018 Jul 12;6(3). pii: E68. doi: 10.3390/microorganisms6030068.


Adaptation and conservation insights from the koala genome.

Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, Alquezar-Planas DE, Attenbrow V, Bragg JG, Brandies PA, Chong AY, Deakin JE, Di Palma F, Duda Z, Eldridge MDB, Ewart KM, Hogg CJ, Frankham GJ, Georges A, Gillett AK, Govendir M, Greenwood AD, Hayakawa T, Helgen KM, Hobbs M, Holleley CE, Heider TN, Jones EA, King A, Madden D, Graves JAM, Morris KM, Neaves LE, Patel HR, Polkinghorne A, Renfree MB, Robin C, Salinas R, Tsangaras K, Waters PD, Waters SA, Wright B, Wilkins MR, Timms P, Belov K.

Nat Genet. 2018 Aug;50(8):1102-1111. doi: 10.1038/s41588-018-0153-5. Epub 2018 Jul 2.


Epitheliocystis in fish: An emerging aquaculture disease with a global impact.

Blandford MI, Taylor-Brown A, Schlacher TA, Nowak B, Polkinghorne A.

Transbound Emerg Dis. 2018 Dec;65(6):1436-1446. doi: 10.1111/tbed.12908. Epub 2018 May 23. Review.


The cascading pathogenic consequences of Sarcoptes scabiei infection that manifest in host disease.

Martin AM, Fraser TA, Lesku JA, Simpson K, Roberts GL, Garvey J, Polkinghorne A, Burridge CP, Carver S.

R Soc Open Sci. 2018 Apr 18;5(4):180018. doi: 10.1098/rsos.180018. eCollection 2018 Apr.


An epizootic of Chlamydia psittaci equine reproductive loss associated with suspected spillover from native Australian parrots.

Jenkins C, Jelocnik M, Micallef ML, Galea F, Taylor-Brown A, Bogema DR, Liu M, O'Rourke B, Chicken C, Carrick J, Polkinghorne A.

Emerg Microbes Infect. 2018 May 16;7(1):88. doi: 10.1038/s41426-018-0089-y.


Understanding the health and production impacts of endemic Chlamydia pecorum infections in lambs.

Walker E, Jelocnik M, Bommana S, Timms P, Carver S, Polkinghorne A.

Vet Microbiol. 2018 Apr;217:90-96. doi: 10.1016/j.vetmic.2018.03.009. Epub 2018 Mar 10.


Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial communities associated with antibiotic treatment.

Dahlhausen KE, Doroud L, Firl AJ, Polkinghorne A, Eisen JA.

PeerJ. 2018 Mar 12;6:e4452. doi: 10.7717/peerj.4452. eCollection 2018.


Chlamydia pecorum in Joint Tissue and Synovial Fluid of a Koala ( Phascolarctos cinereus) with Arthritis.

Burnard D, Gillett A, Polkinghorne A.

J Wildl Dis. 2018 Jul;54(3):646-649. doi: 10.7589/2017-10-248. Epub 2018 Mar 2.


Comparative diagnostics reveals PCR assays on skin scrapings is the most reliable method to detect Sarcoptes scabiei infestations.

Fraser TA, Martin A, Polkinghorne A, Carver S.

Vet Parasitol. 2018 Feb 15;251:119-124. doi: 10.1016/j.vetpar.2018.01.007. Epub 2018 Jan 11.


Koala immunology and infectious diseases: How much can the koala bear?

Madden D, Whaite A, Jones E, Belov K, Timms P, Polkinghorne A.

Dev Comp Immunol. 2018 May;82:177-185. doi: 10.1016/j.dci.2018.01.017. Epub 2018 Jan 31. Review.


Molecular and serological dynamics of Chlamydia pecorum infection in a longitudinal study of prime lamb production.

Bommana S, Walker E, Desclozeaux M, Jelocnik M, Timms P, Polkinghorne A, Carver S.

PeerJ. 2018 Jan 25;6:e4296. doi: 10.7717/peerj.4296. eCollection 2018.


Characterization of the In Vitro Chlamydia pecorum Response to Gamma Interferon.

Islam MM, Jelocnik M, Huston WM, Timms P, Polkinghorne A.

Infect Immun. 2018 Mar 22;86(4). pii: e00714-17. doi: 10.1128/IAI.00714-17. Print 2018 Apr.


Molecular evidence to suggest pigeon-type Chlamydia psittaci in association with an equine foal loss.

Jelocnik M, Jenkins C, O'Rourke B, Barnwell J, Polkinghorne A.

Transbound Emerg Dis. 2018 Jun;65(3):911-915. doi: 10.1111/tbed.12817. Epub 2018 Jan 19.


Culture-independent approaches to chlamydial genomics.

Taylor-Brown A, Madden D, Polkinghorne A.

Microb Genom. 2018 Feb;4(2). doi: 10.1099/mgen.0.000145. Epub 2018 Jan 3. Review.


A Review on Chlamydial Diseases in Animals: Still a Challenge for Pathologists?

Borel N, Polkinghorne A, Pospischil A.

Vet Pathol. 2018 May;55(3):374-390. doi: 10.1177/0300985817751218. Epub 2018 Jan 8. Review.


Epidemiology of chlamydial infection and disease in a free-ranging koala (Phascolarctos cinereus) population.

Nyari S, Waugh CA, Dong J, Quigley BL, Hanger J, Loader J, Polkinghorne A, Timms P.

PLoS One. 2017 Dec 27;12(12):e0190114. doi: 10.1371/journal.pone.0190114. eCollection 2017.


From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen.

Guo W, Jelocnik M, Li J, Sachse K, Polkinghorne A, Pannekoek Y, Kaltenboeck B, Gong J, You J, Wang C.

BMC Genomics. 2017 Dec 6;18(1):949. doi: 10.1186/s12864-017-4343-9.


Asymptomatic infections with highly polymorphic Chlamydia suis are ubiquitous in pigs.

Li M, Jelocnik M, Yang F, Gong J, Kaltenboeck B, Polkinghorne A, Feng Z, Pannekoek Y, Borel N, Song C, Jiang P, Li J, Zhang J, Wang Y, Wang J, Zhou X, Wang C.

BMC Vet Res. 2017 Dec 1;13(1):370. doi: 10.1186/s12917-017-1295-x.


Humoral immune response against two surface antigens of Chlamydia pecorum in vaccinated and naturally infected sheep.

Bommana S, Walker E, Desclozeaux M, Timms P, Polkinghorne A.

PLoS One. 2017 Nov 30;12(11):e0188370. doi: 10.1371/journal.pone.0188370. eCollection 2017.


Mitochondrial genome sequencing reveals potential origins of the scabies mite Sarcoptes scabiei infesting two iconic Australian marsupials.

Fraser TA, Shao R, Fountain-Jones NM, Charleston M, Martin A, Whiteley P, Holme R, Carver S, Polkinghorne A.

BMC Evol Biol. 2017 Nov 28;17(1):233. doi: 10.1186/s12862-017-1086-9.


Transcriptome sequencing of the long-nosed bandicoot (Perameles nasuta) reveals conservation and innovation of immune genes in the marsupial order Peramelemorphia.

Morris KM, Weaver HJ, O'Meally D, Desclozeaux M, Gillett A, Polkinghorne A.

Immunogenetics. 2018 May;70(5):327-336. doi: 10.1007/s00251-017-1043-1. Epub 2017 Nov 20.


Microscopic and molecular analysis of Babesia canis in archived and diagnostic specimens reveal the impact of anti-parasitic treatment and postmortem changes on pathogen detection.

Huber D, Beck A, Anzulović Ž, Jurković D, Polkinghorne A, Baneth G, Beck R.

Parasit Vectors. 2017 Oct 18;10(1):495. doi: 10.1186/s13071-017-2412-1.


Molecular evidence of Chlamydia pecorum and arthropod-associated Chlamydiae in an expanded range of marsupials.

Burnard D, Huston WM, Webb JK, Jelocnik M, Reiss A, Gillett A, Fitzgibbon S, Carver S, Carrucan J, Flanagan C, Timms P, Polkinghorne A.

Sci Rep. 2017 Oct 9;7(1):12844. doi: 10.1038/s41598-017-13164-y.


Development and evaluation of rapid novel isothermal amplification assays for important veterinary pathogens: Chlamydia psittaci and Chlamydia pecorum.

Jelocnik M, Islam MM, Madden D, Jenkins C, Branley J, Carver S, Polkinghorne A.

PeerJ. 2017 Sep 8;5:e3799. doi: 10.7717/peerj.3799. eCollection 2017.


Molecular detection of Anaplasma platys, Anaplasma phagocytophilum and Wolbachia sp. but not Ehrlichia canis in Croatian dogs.

Huber D, Reil I, Duvnjak S, Jurković D, Lukačević D, Pilat M, Beck A, Mihaljević Ž, Vojta L, Polkinghorne A, Beck R.

Parasitol Res. 2017 Nov;116(11):3019-3026. doi: 10.1007/s00436-017-5611-y. Epub 2017 Sep 14.


Culture-independent metagenomics supports discovery of uncultivable bacteria within the genus Chlamydia.

Taylor-Brown A, Spang L, Borel N, Polkinghorne A.

Sci Rep. 2017 Sep 6;7(1):10661. doi: 10.1038/s41598-017-10757-5.


Characterisation of MHC class I genes in the koala.

Cheng Y, Polkinghorne A, Gillett A, Jones EA, O'Meally D, Timms P, Belov K.

Immunogenetics. 2018 Feb;70(2):125-133. doi: 10.1007/s00251-017-1018-2. Epub 2017 Jul 1.


A new equine and zoonotic threat emerges from an old avian pathogen, Chlamydia psittaci.

Polkinghorne A, Greub G.

Clin Microbiol Infect. 2017 Oct;23(10):693-694. doi: 10.1016/j.cmi.2017.05.025. Epub 2017 Jun 2. No abstract available.


Immunization of a wild koala population with a recombinant Chlamydia pecorum Major Outer Membrane Protein (MOMP) or Polymorphic Membrane Protein (PMP) based vaccine: New insights into immune response, protection and clearance.

Desclozeaux M, Robbins A, Jelocnik M, Khan SA, Hanger J, Gerdts V, Potter A, Polkinghorne A, Timms P.

PLoS One. 2017 Jun 2;12(6):e0178786. doi: 10.1371/journal.pone.0178786. eCollection 2017.


New and emerging chlamydial infections of creatures great and small.

Taylor-Brown A, Polkinghorne A.

New Microbes New Infect. 2017 Apr 18;18:28-33. doi: 10.1016/j.nmni.2017.04.004. eCollection 2017 Jul. Review.


Safety and immunogenicity of a prototype anti-Chlamydia pecorum recombinant protein vaccine in lambs and pregnant ewes.

Desclozeaux M, Jelocnik M, Whitting K, Saifzadeh S, Bommana S, Potter A, Gerdts V, Timms P, Polkinghorne A.

Vaccine. 2017 Jun 14;35(27):3461-3465. doi: 10.1016/j.vaccine.2017.03.091. Epub 2017 May 18.


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