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Items: 12

1.

A cellular census of human lungs identifies novel cell states in health and in asthma.

Vieira Braga FA, Kar G, Berg M, Carpaij OA, Polanski K, Simon LM, Brouwer S, Gomes T, Hesse L, Jiang J, Fasouli ES, Efremova M, Vento-Tormo R, Talavera-López C, Jonker MR, Affleck K, Palit S, Strzelecka PM, Firth HV, Mahbubani KT, Cvejic A, Meyer KB, Saeb-Parsy K, Luinge M, Brandsma CA, Timens W, Angelidis I, Strunz M, Koppelman GH, van Oosterhout AJ, Schiller HB, Theis FJ, van den Berge M, Nawijn MC, Teichmann SA.

Nat Med. 2019 Jul;25(7):1153-1163. doi: 10.1038/s41591-019-0468-5. Epub 2019 Jun 17.

PMID:
31209336
2.

Single-cell reconstruction of the early maternal-fetal interface in humans.

Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E, Polański K, Goncalves A, Gardner L, Holmqvist S, Henriksson J, Zou A, Sharkey AM, Millar B, Innes B, Wood L, Wilbrey-Clark A, Payne RP, Ivarsson MA, Lisgo S, Filby A, Rowitch DH, Bulmer JN, Wright GJ, Stubbington MJT, Haniffa M, Moffett A, Teichmann SA.

Nature. 2018 Nov;563(7731):347-353. doi: 10.1038/s41586-018-0698-6. Epub 2018 Nov 14.

PMID:
30429548
3.

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq.

Lindeman I, Emerton G, Mamanova L, Snir O, Polanski K, Qiao SW, Sollid LM, Teichmann SA, Stubbington MJT.

Nat Methods. 2018 Aug;15(8):563-565. doi: 10.1038/s41592-018-0082-3. No abstract available.

PMID:
30065371
4.

Bringing numerous methods for expression and promoter analysis to a public cloud computing service.

Polanski K, Gao B, Mason SA, Brown P, Ott S, Denby KJ, Wild DL.

Bioinformatics. 2018 Mar 1;34(5):884-886. doi: 10.1093/bioinformatics/btx692.

5.

Panel of serum metabolites discriminates cancer patients and healthy participants of lung cancer screening - a pilot study.

Roś-Mazurczyk M, Wojakowska A, Marczak Ł, Polański K, Pietrowska M, Polanska J, Dziadziuszko R, Jassem J, Rzyman W, Widlak P.

Acta Biochim Pol. 2017;64(3):513-518. doi: 10.18388/abp.2017_1517. Epub 2017 Aug 12.

6.

Ionizing radiation affects profile of serum metabolites: increased level of 3-hydroxybutyric acid in serum of cancer patients treated with radiotherapy.

Roś-Mazurczyk M, Wojakowska A, Marczak Ł, Polański K, Pietrowska M, Jelonek K, Domińczyk I, Hajduk A, Rutkowski T, Składowski K, Widłak P.

Acta Biochim Pol. 2017;64(1):189-193. doi: 10.18388/abp.2016_1301. Epub 2016 Nov 4.

7.

Long-term High Fat Ketogenic Diet Promotes Renal Tumor Growth in a Rat Model of Tuberous Sclerosis.

Liśkiewicz AD, Kasprowska D, Wojakowska A, Polański K, Lewin-Kowalik J, Kotulska K, Jędrzejowska-Szypułka H.

Sci Rep. 2016 Feb 19;6:21807. doi: 10.1038/srep21807.

8.

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000.

Lewis LA, Polanski K, de Torres-Zabala M, Jayaraman S, Bowden L, Moore J, Penfold CA, Jenkins DJ, Hill C, Baxter L, Kulasekaran S, Truman W, Littlejohn G, Prusinska J, Mead A, Steinbrenner J, Hickman R, Rand D, Wild DL, Ott S, Buchanan-Wollaston V, Smirnoff N, Beynon J, Denby K, Grant M.

Plant Cell. 2015 Nov;27(11):3038-64. doi: 10.1105/tpc.15.00471. Epub 2015 Nov 13.

9.

Detection of metabolites discriminating subtypes of thyroid cancer: Molecular profiling of FFPE samples using the GC/MS approach.

Wojakowska A, Chekan M, Marczak Ł, Polanski K, Lange D, Pietrowska M, Widlak P.

Mol Cell Endocrinol. 2015 Dec 5;417:149-57. doi: 10.1016/j.mce.2015.09.021. Epub 2015 Sep 28.

10.

An Optimized Method of Metabolite Extraction from Formalin-Fixed Paraffin-Embedded Tissue for GC/MS Analysis.

Wojakowska A, Marczak Ł, Jelonek K, Polanski K, Widlak P, Pietrowska M.

PLoS One. 2015 Sep 8;10(9):e0136902. doi: 10.1371/journal.pone.0136902. eCollection 2015.

11.

Identification of serum proteome components associated with progression of non-small cell lung cancer.

Pietrowska M, Jelonek K, Michalak M, Roś M, Rodziewicz P, Chmielewska K, Polański K, Polańska J, Gdowicz-Kłosok A, Giglok M, Suwiński R, Tarnawski R, Dziadziuszko R, Rzyman W, Widłak P.

Acta Biochim Pol. 2014;61(2):325-31. Epub 2014 May 29.

12.

Wigwams: identifying gene modules co-regulated across multiple biological conditions.

Polanski K, Rhodes J, Hill C, Zhang P, Jenkins DJ, Kiddle SJ, Jironkin A, Beynon J, Buchanan-Wollaston V, Ott S, Denby KJ.

Bioinformatics. 2014 Apr 1;30(7):962-70. doi: 10.1093/bioinformatics/btt728. Epub 2013 Dec 18.

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