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Items: 30

1.

High-throughput phenotyping platforms enhance genomic selection for wheat grain yield across populations and cycles in early stage.

Sun J, Poland JA, Mondal S, Crossa J, Juliana P, Singh RP, Rutkoski JE, Jannink JL, Crespo-Herrera L, Velu G, Huerta-Espino J, Sorrells ME.

Theor Appl Genet. 2019 Jun;132(6):1705-1720. doi: 10.1007/s00122-019-03309-0. Epub 2019 Feb 18.

PMID:
30778634
2.

Genomic Analysis and Prediction within a US Public Collaborative Winter Wheat Regional Testing Nursery.

Rife TW, Graybosch RA, Poland JA.

Plant Genome. 2018 Nov;11(3). doi: 10.3835/plantgenome2018.01.0004.

3.

Breeding-assisted genomics: Applying meta-GWAS for milling and baking quality in CIMMYT wheat breeding program.

Battenfield SD, Sheridan JL, Silva LDCE, Miclaus KJ, Dreisigacker S, Wolfinger RD, Peña RJ, Singh RP, Jackson EW, Fritz AK, Guzmán C, Poland JA.

PLoS One. 2018 Nov 29;13(11):e0204757. doi: 10.1371/journal.pone.0204757. eCollection 2018.

4.

Genome-wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes.

Juliana P, Singh RP, Singh PK, Poland JA, Bergstrom GC, Huerta-Espino J, Bhavani S, Crossa J, Sorrells ME.

Theor Appl Genet. 2018 Jul;131(7):1405-1422. doi: 10.1007/s00122-018-3086-6. Epub 2018 Mar 27.

5.

Determinants of Virulence and In Vitro Development Colocalize on a Genetic Map of Setosphaeria turcica.

Mideros SX, Chung CL, Wiesner-Hanks T, Poland JA, Wu D, Fialko AA, Turgeon BG, Nelson RJ.

Phytopathology. 2018 Feb;108(2):254-263. doi: 10.1094/PHYTO-01-17-0021-R. Epub 2017 Dec 18.

PMID:
28952420
6.

Comparison of Models and Whole-Genome Profiling Approaches for Genomic-Enabled Prediction of Septoria Tritici Blotch, Stagonospora Nodorum Blotch, and Tan Spot Resistance in Wheat.

Juliana P, Singh RP, Singh PK, Crossa J, Rutkoski JE, Poland JA, Bergstrom GC, Sorrells ME.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.08.0082.

7.

Multitrait, Random Regression, or Simple Repeatability Model in High-Throughput Phenotyping Data Improve Genomic Prediction for Wheat Grain Yield.

Sun J, Rutkoski JE, Poland JA, Crossa J, Jannink JL, Sorrells ME.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.11.0111.

8.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

9.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

10.

Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat.

Juliana P, Singh RP, Singh PK, Crossa J, Huerta-Espino J, Lan C, Bhavani S, Rutkoski JE, Poland JA, Bergstrom GC, Sorrells ME.

Theor Appl Genet. 2017 Jul;130(7):1415-1430. doi: 10.1007/s00122-017-2897-1. Epub 2017 Apr 9.

11.
12.

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement.

Chaffin AS, Huang YF, Smith S, Bekele WA, Babiker E, Gnanesh BN, Foresman BJ, Blanchard SG, Jay JJ, Reid RW, Wight CP, Chao S, Oliver R, Islamovic E, Kolb FL, McCartney C, Mitchell Fetch JW, Beattie AD, Bjørnstad Å, Bonman JM, Langdon T, Howarth CJ, Brouwer CR, Jellen EN, Klos KE, Poland JA, Hsieh TF, Brown R, Jackson E, Schlueter JA, Tinker NA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0102.

13.

Genomic Selection for Processing and End-Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program.

Battenfield SD, Guzmán C, Gaynor RC, Singh RP, Peña RJ, Dreisigacker S, Fritz AK, Poland JA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2016.01.0005.

14.

Fine mapping of the stem rust resistance gene SrTA10187.

Wiersma AT, Brown LK, Brisco EI, Liu TL, Childs KL, Poland JA, Sehgal SK, Olson EL.

Theor Appl Genet. 2016 Dec;129(12):2369-2378. Epub 2016 Aug 31.

PMID:
27581540
15.

Quantifying variety-specific heat resistance and the potential for adaptation to climate change.

Tack J, Barkley A, Rife TW, Poland JA, Nalley LL.

Glob Chang Biol. 2016 Aug;22(8):2904-12. doi: 10.1111/gcb.13163. Epub 2016 May 10.

PMID:
26577840
16.

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.

17.

Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling.

Rife TW, Wu S, Bowden RL, Poland JA.

BMC Genomics. 2015 Mar 28;16:248. doi: 10.1186/s12864-015-1404-9.

18.

Resistance to gray leaf spot of maize: genetic architecture and mechanisms elucidated through nested association mapping and near-isogenic line analysis.

Benson JM, Poland JA, Benson BM, Stromberg EL, Nelson RJ.

PLoS Genet. 2015 Mar 12;11(3):e1005045. doi: 10.1371/journal.pgen.1005045. eCollection 2015 Mar.

19.

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.

Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, Muehlbauer GJ, Stein N, Rokhsar DS.

Genome Biol. 2015 Jan 31;16:26. doi: 10.1186/s13059-015-0582-8.

20.

Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat.

Huang YF, Poland JA, Wight CP, Jackson EW, Tinker NA.

PLoS One. 2014 Jul 21;9(7):e102448. doi: 10.1371/journal.pone.0102448. eCollection 2014.

21.

Unraveling genomic complexity at a quantitative disease resistance locus in maize.

Jamann TM, Poland JA, Kolkman JM, Smith LG, Nelson RJ.

Genetics. 2014 Sep;198(1):333-44. doi: 10.1534/genetics.114.167486. Epub 2014 Jul 9.

22.

SNPMeta: SNP annotation and SNP metadata collection without a reference genome.

Kono TJ, Seth K, Poland JA, Morrell PL.

Mol Ecol Resour. 2014 Mar;14(2):419-25. doi: 10.1111/1755-0998.12183. Epub 2013 Nov 16.

PMID:
24237904
23.

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, Waugh R.

Plant J. 2013 Nov;76(4):718-27. doi: 10.1111/tpj.12319. Epub 2013 Oct 10.

24.

Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat.

Olson EL, Rouse MN, Pumphrey MO, Bowden RL, Gill BS, Poland JA.

Theor Appl Genet. 2013 Oct;126(10):2477-84. doi: 10.1007/s00122-013-2148-z. Epub 2013 Jul 18.

PMID:
23864229
25.

Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheat.

Olson EL, Rouse MN, Pumphrey MO, Bowden RL, Gill BS, Poland JA.

Theor Appl Genet. 2013 May;126(5):1179-88. doi: 10.1007/s00122-013-2045-5. Epub 2013 Feb 3.

PMID:
23377571
26.

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach.

Poland JA, Brown PJ, Sorrells ME, Jannink JL.

PLoS One. 2012;7(2):e32253. doi: 10.1371/journal.pone.0032253. Epub 2012 Feb 28.

27.

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species.

Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE.

PLoS One. 2011 May 4;6(5):e19379. doi: 10.1371/journal.pone.0019379.

28.

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize.

Poland JA, Bradbury PJ, Buckler ES, Nelson RJ.

Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6893-8. doi: 10.1073/pnas.1010894108. Epub 2011 Apr 11.

29.

In the eye of the beholder: the effect of rater variability and different rating scales on QTL mapping.

Poland JA, Nelson RJ.

Phytopathology. 2011 Feb;101(2):290-8. doi: 10.1094/PHYTO-03-10-0087.

30.

Shades of gray: the world of quantitative disease resistance.

Poland JA, Balint-Kurti PJ, Wisser RJ, Pratt RC, Nelson RJ.

Trends Plant Sci. 2009 Jan;14(1):21-9. doi: 10.1016/j.tplants.2008.10.006. Epub 2008 Dec 4. Review.

PMID:
19062327

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