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Items: 1 to 50 of 187

1.

Field-based high-throughput phenotyping of plant height in sorghum using different sensing technologies.

Wang X, Singh D, Marla S, Morris G, Poland J.

Plant Methods. 2018 Jul 4;14:53. doi: 10.1186/s13007-018-0324-5. eCollection 2018.

2.

Genomic Selection in Preliminary Yield Trials in a Winter Wheat Breeding Program.

Belamkar V, Guttieri MJ, Hussain W, Jarquín D, El-Basyoni I, Poland J, Lorenz AJ, Baenziger PS.

G3 (Bethesda). 2018 Jun 26. pii: g3.200415.2018. doi: 10.1534/g3.118.200415. [Epub ahead of print]

3.

QTL mapping of pre-harvest sprouting resistance in a white wheat cultivar Danby.

Shao M, Bai G, Rife TW, Poland J, Lin M, Liu S, Chen H, Kumssa T, Fritz A, Trick H, Li Y, Zhang G.

Theor Appl Genet. 2018 Aug;131(8):1683-1697. doi: 10.1007/s00122-018-3107-5. Epub 2018 Jun 2.

PMID:
29860625
4.

Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat.

Mourad AMI, Sallam A, Belamkar V, Wegulo S, Bowden R, Jin Y, Mahdy E, Bakheit B, El-Wafaa AA, Poland J, Baenziger PS.

Front Plant Sci. 2018 Mar 27;9:380. doi: 10.3389/fpls.2018.00380. eCollection 2018.

5.

Genetic Diversity and Population Structure of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing.

Eltaher S, Sallam A, Belamkar V, Emara HA, Nower AA, Salem KFM, Poland J, Baenziger PS.

Front Genet. 2018 Mar 12;9:76. doi: 10.3389/fgene.2018.00076. eCollection 2018.

6.

Genome-wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes.

Juliana P, Singh RP, Singh PK, Poland JA, Bergstrom GC, Huerta-Espino J, Bhavani S, Crossa J, Sorrells ME.

Theor Appl Genet. 2018 Jul;131(7):1405-1422. doi: 10.1007/s00122-018-3086-6. Epub 2018 Mar 27.

7.

A comparison between genotyping-by-sequencing and array-based scoring of SNPs for genomic prediction accuracy in winter wheat.

Elbasyoni IS, Lorenz AJ, Guttieri M, Frels K, Baenziger PS, Poland J, Akhunov E.

Plant Sci. 2018 May;270:123-130. doi: 10.1016/j.plantsci.2018.02.019. Epub 2018 Feb 21.

PMID:
29576064
8.

Molecular diversity and landscape genomics of the crop wild relative Triticum urartu across the Fertile Crescent.

Brunazzi A, Scaglione D, Talini RF, Miculan M, Magni F, Poland J, Enrico Pè M, Brandolini A, Dell'Acqua M.

Plant J. 2018 May;94(4):670-684. doi: 10.1111/tpj.13888. Epub 2018 Apr 18.

PMID:
29573496
9.

Combining High-Throughput Phenotyping and Genomic Information to Increase Prediction and Selection Accuracy in Wheat Breeding.

Crain J, Mondal S, Rutkoski J, Singh RP, Poland J.

Plant Genome. 2018 Mar;11(1). doi: 10.3835/plantgenome2017.05.0043.

10.

Chromosome Rearrangements Caused by Double Monosomy in Wheat-Barley Group-7 Substitution Lines.

Danilova TV, Friebe B, Gill BS, Poland J, Jackson E.

Cytogenet Genome Res. 2018;154(1):45-55. doi: 10.1159/000487183. Epub 2018 Feb 28.

PMID:
29486464
11.

Uncovering the Genetic Architecture of Seed Weight and Size in Intermediate Wheatgrass through Linkage and Association Mapping.

Zhang X, Larson SR, Gao L, Teh SL, DeHaan LR, Fraser M, Sallam A, Kantarski T, Frels K, Poland J, Wyse D, Anderson JA.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.03.0022.

12.

Genotyping-by-Sequencing Derived High-Density Linkage Map and its Application to QTL Mapping of Flag Leaf Traits in Bread Wheat.

Hussain W, Baenziger PS, Belamkar V, Guttieri MJ, Venegas JP, Easterly A, Sallam A, Poland J.

Sci Rep. 2017 Nov 27;7(1):16394. doi: 10.1038/s41598-017-16006-z.

13.

Development of a complete set of wheat-barley group-7 Robertsonian translocation chromosomes conferring an increased content of β-glucan.

Danilova TV, Friebe B, Gill BS, Poland J, Jackson E.

Theor Appl Genet. 2018 Feb;131(2):377-388. doi: 10.1007/s00122-017-3008-z. Epub 2017 Nov 10.

PMID:
29124282
14.

Genotyping live fish larvae: Non-lethal and noninvasive DNA isolation from 3-5 day old hatchlings.

Espinoza GJ, Poland JM, Bremer JRA.

Biotechniques. 2017 Oct 1;63(4):181-186. doi: 10.2144/000114598.

15.

Determinants of Virulence and In Vitro Development Colocalize on a Genetic Map of Setosphaeria turcica.

Mideros SX, Chung CL, Wiesner-Hanks T, Poland JA, Wu D, Fialko AA, Turgeon BG, Nelson RJ.

Phytopathology. 2018 Feb;108(2):254-263. doi: 10.1094/PHYTO-01-17-0021-R. Epub 2017 Dec 18.

PMID:
28952420
16.

Comparison of Models and Whole-Genome Profiling Approaches for Genomic-Enabled Prediction of Septoria Tritici Blotch, Stagonospora Nodorum Blotch, and Tan Spot Resistance in Wheat.

Juliana P, Singh RP, Singh PK, Crossa J, Rutkoski JE, Poland JA, Bergstrom GC, Sorrells ME.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.08.0082.

17.

Single-Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments.

Pérez-Rodríguez P, Crossa J, Rutkoski J, Poland J, Singh R, Legarra A, Autrique E, Campos GL, Burgueño J, Dreisigacker S.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.09.0089.

18.

Multitrait, Random Regression, or Simple Repeatability Model in High-Throughput Phenotyping Data Improve Genomic Prediction for Wheat Grain Yield.

Sun J, Rutkoski JE, Poland JA, Crossa J, Jannink JL, Sorrells ME.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.11.0111.

19.

Strategies for Selecting Crosses Using Genomic Prediction in Two Wheat Breeding Programs.

Lado B, Battenfield S, Guzmán C, Quincke M, Singh RP, Dreisigacker S, Peña RJ, Fritz A, Silva P, Poland J, Gutiérrez L.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.12.0128.

20.

Increasing Genomic-Enabled Prediction Accuracy by Modeling Genotype × Environment Interactions in Kansas Wheat.

Jarquín D, Lemes da Silva C, Gaynor RC, Poland J, Fritz A, Howard R, Battenfield S, Crossa J.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.12.0130.

21.

Genome-Wide Association Study of Grain Architecture in Wild Wheat Aegilops tauschii.

Arora S, Singh N, Kaur S, Bains NS, Uauy C, Poland J, Chhuneja P.

Front Plant Sci. 2017 May 31;8:886. doi: 10.3389/fpls.2017.00886. eCollection 2017.

22.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

23.

A chromosome conformation capture ordered sequence of the barley genome.

Mascher M, Gundlach H, Himmelbach A, Beier S, Twardziok SO, Wicker T, Radchuk V, Dockter C, Hedley PE, Russell J, Bayer M, Ramsay L, Liu H, Haberer G, Zhang XQ, Zhang Q, Barrero RA, Li L, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Bolser D, Colmsee C, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Chailyan A, Sampath D, Heavens D, Clissold L, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang P, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Borisjuk L, Houben A, Doležel J, Ayling S, Lonardi S, Kersey P, Langridge P, Muehlbauer GJ, Clark MD, Caccamo M, Schulman AH, Mayer KFX, Platzer M, Close TJ, Scholz U, Hansson M, Zhang G, Braumann I, Spannagl M, Li C, Waugh R, Stein N.

Nature. 2017 Apr 26;544(7651):427-433. doi: 10.1038/nature22043.

PMID:
28447635
24.

Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat.

Juliana P, Singh RP, Singh PK, Crossa J, Huerta-Espino J, Lan C, Bhavani S, Rutkoski JE, Poland JA, Bergstrom GC, Sorrells ME.

Theor Appl Genet. 2017 Jul;130(7):1415-1430. doi: 10.1007/s00122-017-2897-1. Epub 2017 Apr 9.

25.

Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice.

Tanger P, Klassen S, Mojica JP, Lovell JT, Moyers BT, Baraoidan M, Naredo ME, McNally KL, Poland J, Bush DR, Leung H, Leach JE, McKay JK.

Sci Rep. 2017 Feb 21;7:42839. doi: 10.1038/srep42839.

26.

Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action.

Norris JL, Farrow MA, Gutierrez DB, Palmer LD, Muszynski N, Sherrod SD, Pino JC, Allen JL, Spraggins JM, Lubbock AL, Jordan A, Burns W, Poland JC, Romer C, Manier ML, Nei YW, Prentice BM, Rose KL, Hill S, Van de Plas R, Tsui T, Braman NM, Keller MR, Rutherford SA, Lobdell N, Lopez CF, Lacy DB, McLean JA, Wikswo JP, Skaar EP, Caprioli RM.

J Proteome Res. 2017 Mar 3;16(3):1364-1375. doi: 10.1021/acs.jproteome.6b01004. Epub 2017 Feb 9.

PMID:
28088864
27.

Wheat quality improvement at CIMMYT and the use of genomic selection on it.

Guzman C, Peña RJ, Singh R, Autrique E, Dreisigacker S, Crossa J, Rutkoski J, Poland J, Battenfield S.

Appl Transl Genom. 2016 Oct 29;11:3-8. doi: 10.1016/j.atg.2016.10.004. eCollection 2016 Dec. Review.

28.
29.

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement.

Chaffin AS, Huang YF, Smith S, Bekele WA, Babiker E, Gnanesh BN, Foresman BJ, Blanchard SG, Jay JJ, Reid RW, Wight CP, Chao S, Oliver R, Islamovic E, Kolb FL, McCartney C, Mitchell Fetch JW, Beattie AD, Bjørnstad Å, Bonman JM, Langdon T, Howarth CJ, Brouwer CR, Jellen EN, Klos KE, Poland JA, Hsieh TF, Brown R, Jackson E, Schlueter JA, Tinker NA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0102.

30.

Genomic Selection for Processing and End-Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program.

Battenfield SD, Guzmán C, Gaynor RC, Singh RP, Peña RJ, Dreisigacker S, Fritz AK, Poland JA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2016.01.0005.

31.

Establishment and Optimization of Genomic Selection to Accelerate the Domestication and Improvement of Intermediate Wheatgrass.

Zhang X, Sallam A, Gao L, Kantarski T, Poland J, DeHaan LR, Wyse DL, Anderson JA.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.07.0059.

32.

Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing.

Kantarski T, Larson S, Zhang X, DeHaan L, Borevitz J, Anderson J, Poland J.

Theor Appl Genet. 2017 Jan;130(1):137-150. doi: 10.1007/s00122-016-2799-7. Epub 2016 Oct 13.

PMID:
27738715
33.

Fine mapping of the stem rust resistance gene SrTA10187.

Wiersma AT, Brown LK, Brisco EI, Liu TL, Childs KL, Poland JA, Sehgal SK, Olson EL.

Theor Appl Genet. 2016 Dec;129(12):2369-2378. Epub 2016 Aug 31.

PMID:
27581540
34.

Advances and Challenges in Genomic Selection for Disease Resistance.

Poland J, Rutkoski J.

Annu Rev Phytopathol. 2016 Aug 4;54:79-98. doi: 10.1146/annurev-phyto-080615-100056. Review.

PMID:
27491433
35.

The Quest for Understanding Phenotypic Variation via Integrated Approaches in the Field Environment.

Pauli D, Chapman SC, Bart R, Topp CN, Lawrence-Dill CJ, Poland J, Gore MA.

Plant Physiol. 2016 Oct;172(2):622-634. Epub 2016 Aug 1. Review. No abstract available.

36.

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat.

Rutkoski J, Poland J, Mondal S, Autrique E, Pérez LG, Crossa J, Reynolds M, Singh R.

G3 (Bethesda). 2016 Sep 8;6(9):2799-808. doi: 10.1534/g3.116.032888.

37.

Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries.

Haghighattalab A, González Pérez L, Mondal S, Singh D, Schinstock D, Rutkoski J, Ortiz-Monasterio I, Singh RP, Goodin D, Poland J.

Plant Methods. 2016 Jun 24;12:35. doi: 10.1186/s13007-016-0134-6. eCollection 2016.

38.

A whole-genome, radiation hybrid mapping resource of hexaploid wheat.

Tiwari VK, Heesacker A, Riera-Lizarazu O, Gunn H, Wang S, Wang Y, Gu YQ, Paux E, Koo DH, Kumar A, Luo MC, Lazo G, Zemetra R, Akhunov E, Friebe B, Poland J, Gill BS, Kianian S, Leonard JM.

Plant J. 2016 Apr;86(2):195-207. doi: 10.1111/tpj.13153.

39.

Quantifying variety-specific heat resistance and the potential for adaptation to climate change.

Tack J, Barkley A, Rife TW, Poland JA, Nalley LL.

Glob Chang Biol. 2016 Aug;22(8):2904-12. doi: 10.1111/gcb.13163. Epub 2016 May 10.

PMID:
26577840
40.

Application of Population Sequencing (POPSEQ) for Ordering and Imputing Genotyping-by-Sequencing Markers in Hexaploid Wheat.

Edae EA, Bowden RL, Poland J.

G3 (Bethesda). 2015 Nov 3;5(12):2547-53. doi: 10.1534/g3.115.020362.

41.

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata.

Tiwari VK, Wang S, Danilova T, Koo DH, Vrána J, Kubaláková M, Hribova E, Rawat N, Kalia B, Singh N, Friebe B, Doležel J, Akhunov E, Poland J, Sabir JS, Gill BS.

Plant J. 2015 Nov;84(4):733-46. doi: 10.1111/tpj.13036.

42.

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.

43.

Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling.

Rife TW, Wu S, Bowden RL, Poland JA.

BMC Genomics. 2015 Mar 28;16:248. doi: 10.1186/s12864-015-1404-9.

44.

Breeding-assisted genomics.

Poland J.

Curr Opin Plant Biol. 2015 Apr;24:119-24. doi: 10.1016/j.pbi.2015.02.009. Epub 2015 Mar 26. Review.

PMID:
25795171
45.

Precisely mapping a major gene conferring resistance to Hessian fly in bread wheat using genotyping-by-sequencing.

Li G, Wang Y, Chen MS, Edae E, Poland J, Akhunov E, Chao S, Bai G, Carver BF, Yan L.

BMC Genomics. 2015 Feb 21;16:108. doi: 10.1186/s12864-015-1297-7.

46.

Resistance to gray leaf spot of maize: genetic architecture and mechanisms elucidated through nested association mapping and near-isogenic line analysis.

Benson JM, Poland JA, Benson BM, Stromberg EL, Nelson RJ.

PLoS Genet. 2015 Mar 12;11(3):e1005045. doi: 10.1371/journal.pgen.1005045. eCollection 2015 Mar.

47.

Increased prediction accuracy in wheat breeding trials using a marker × environment interaction genomic selection model.

Lopez-Cruz M, Crossa J, Bonnett D, Dreisigacker S, Poland J, Jannink JL, Singh RP, Autrique E, de los Campos G.

G3 (Bethesda). 2015 Feb 6;5(4):569-82. doi: 10.1534/g3.114.016097.

48.

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.

Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, Muehlbauer GJ, Stein N, Rokhsar DS.

Genome Biol. 2015 Jan 31;16:26. doi: 10.1186/s13059-015-0582-8.

49.

Mapping QTL for the traits associated with heat tolerance in wheat (Triticum aestivum L.).

Talukder SK, Babar MA, Vijayalakshmi K, Poland J, Prasad PV, Bowden R, Fritz A.

BMC Genet. 2014 Nov 11;15:97. doi: 10.1186/s12863-014-0097-4.

50.

Training set optimization under population structure in genomic selection.

Isidro J, Jannink JL, Akdemir D, Poland J, Heslot N, Sorrells ME.

Theor Appl Genet. 2015 Jan;128(1):145-58. doi: 10.1007/s00122-014-2418-4. Epub 2014 Nov 1.

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