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Items: 27

1.

Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility.

Lareau CA, Duarte FM, Chew JG, Kartha VK, Burkett ZD, Kohlway AS, Pokholok D, Aryee MJ, Steemers FJ, Lebofsky R, Buenrostro JD.

Nat Biotechnol. 2019 Aug;37(8):916-924. doi: 10.1038/s41587-019-0147-6. Epub 2019 Jun 24.

PMID:
31235917
2.

Highly scalable generation of DNA methylation profiles in single cells.

Mulqueen RM, Pokholok D, Norberg SJ, Torkenczy KA, Fields AJ, Sun D, Sinnamon JR, Shendure J, Trapnell C, O'Roak BJ, Xia Z, Steemers FJ, Adey AC.

Nat Biotechnol. 2018 Jun;36(5):428-431. doi: 10.1038/nbt.4112. Epub 2018 Apr 9.

3.

Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.

Zhang F, Christiansen L, Thomas J, Pokholok D, Jackson R, Morrell N, Zhao Y, Wiley M, Welch E, Jaeger E, Granat A, Norberg SJ, Halpern A, C Rogert M, Ronaghi M, Shendure J, Gormley N, Gunderson KL, Steemers FJ.

Nat Biotechnol. 2017 Sep;35(9):852-857. doi: 10.1038/nbt.3897. Epub 2017 Jun 26.

PMID:
28650462
4.

Genome-wide assessment of imprinted expression in human cells.

Morcos L, Ge B, Koka V, Lam KC, Pokholok DK, Gunderson KL, Montpetit A, Verlaan DJ, Pastinen T.

Genome Biol. 2011;12(3):R25. doi: 10.1186/gb-2011-12-3-r25. Epub 2011 Mar 21.

5.

Deletion at fragile sites is a common and early event in Barrett's esophagus.

Lai LA, Kostadinov R, Barrett MT, Peiffer DA, Pokholok D, Odze R, Sanchez CA, Maley CC, Reid BJ, Gunderson KL, Rabinovitch PS.

Mol Cancer Res. 2010 Aug;8(8):1084-94. doi: 10.1158/1541-7786.MCR-09-0529. Epub 2010 Jul 20.

6.

Computational analysis of whole-genome differential allelic expression data in human.

Wagner JR, Ge B, Pokholok D, Gunderson KL, Pastinen T, Blanchette M.

PLoS Comput Biol. 2010 Jul 8;6(7):e1000849. doi: 10.1371/journal.pcbi.1000849.

7.

Global patterns of cis variation in human cells revealed by high-density allelic expression analysis.

Ge B, Pokholok DK, Kwan T, Grundberg E, Morcos L, Verlaan DJ, Le J, Koka V, Lam KC, Gagné V, Dias J, Hoberman R, Montpetit A, Joly MM, Harvey EJ, Sinnett D, Beaulieu P, Hamon R, Graziani A, Dewar K, Harmsen E, Majewski J, Göring HH, Naumova AK, Blanchette M, Gunderson KL, Pastinen T.

Nat Genet. 2009 Nov;41(11):1216-22. doi: 10.1038/ng.473. Epub 2009 Oct 18.

PMID:
19838192
8.

Single nucleotide polymorphism-based genome-wide chromosome copy change, loss of heterozygosity, and aneuploidy in Barrett's esophagus neoplastic progression.

Li X, Galipeau PC, Sanchez CA, Blount PL, Maley CC, Arnaudo J, Peiffer DA, Pokholok D, Gunderson KL, Reid BJ.

Cancer Prev Res (Phila). 2008 Nov;1(6):413-23. doi: 10.1158/1940-6207.CAPR-08-0121.

9.

High-resolution computational models of genome binding events.

Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2006 Aug;24(8):963-70. Erratum in: Nat Biotechnol. 2006 Oct;24(10):1293.

PMID:
16900145
10.

Activated signal transduction kinases frequently occupy target genes.

Pokholok DK, Zeitlinger J, Hannett NM, Reynolds DB, Young RA.

Science. 2006 Jul 28;313(5786):533-6.

11.

Genome-wide map of nucleosome acetylation and methylation in yeast.

Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA.

Cell. 2005 Aug 26;122(4):517-27.

12.

Global position and recruitment of HATs and HDACs in the yeast genome.

Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford DK, Young RA.

Mol Cell. 2004 Oct 22;16(2):199-209.

13.

Transcriptional regulatory code of a eukaryotic genome.

Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA.

Nature. 2004 Sep 2;431(7004):99-104.

14.

Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo.

Pokholok DK, Hannett NM, Young RA.

Mol Cell. 2002 Apr;9(4):799-809.

15.

The feedback response of Escherichia coli rRNA synthesis is not identical to the mechanism of growth rate-dependent control.

Voulgaris J, Pokholok D, Holmes WM, Squires C, Squires CL.

J Bacteriol. 2000 Jan;182(2):536-9.

16.

Multiple mechanisms are used for growth rate and stringent control of leuV transcriptional initiation in Escherichia coli.

Pokholok DK, Redlak M, Turnbough CL Jr, Dylla S, Holmes WM.

J Bacteriol. 1999 Sep;181(18):5771-82.

17.

Eukaryotic expression of enzymatically active human immunodeficiency virus type 1 reverse transcriptase.

Isaguliants MG, Pokrovskaya K, Kashuba VI, Pokholok D, Hinkula J, Wahren B, Kochetkov SN.

FEBS Lett. 1999 Mar 26;447(2-3):232-6.

18.

The DNA polymerase-encoding gene from a thermoacidophilic archaeon Sulfolobus acidocaldarius.

Datukishvili N, Pokholok D, Lottspeich F, Prangishvili D, Rechinsky V.

Gene. 1996 Oct 24;177(1-2):271-3.

PMID:
8921881
19.

Functional analysis of the lymphotoxin-beta promoter. Sequence requirements for PMA activation.

Kuprash DV, Osipovich OA, Pokholok DK, Alimzhanov MB, Biragyn A, Turetskaya RL, Nedospasov SA.

J Immunol. 1996 Apr 1;156(7):2465-72.

PMID:
8786306
20.

[Interaction of primers with mutant forms of human immunodeficiency virus reverse transcriptase].

Zakharova OD, Suturina OA, Gudima SO, Pokholok DK, Iamkovoĭ VI, Kochetkov SN, Nevinskiĭ GA.

Mol Biol (Mosk). 1996 Jan-Feb;30(1):231-40. Russian. No abstract available.

PMID:
8714140
21.

[Stability of human immunodeficiency virus to azidothymidine. II. Kinetic characteristics of "AZT-resistant" mutant forms of reverse transcriptase].

Pokholok DK, Gudima SO, Memelova LV, Esipov DS, Rechinskiĭ VO, Kochetkov SN.

Biokhimiia. 1996 Jan;61(1):142-51. Russian.

PMID:
8679772
22.

Cloning and expression analysis of the murine lymphotoxin beta gene.

Pokholok DK, Maroulakou IG, Kuprash DV, Alimzhanov MB, Kozlov SV, Novobrantseva TI, Turetskaya RL, Green JE, Nedospasov SA.

Proc Natl Acad Sci U S A. 1995 Jan 31;92(3):674-8.

23.

[Kinetic analysis of interaction of human immunodeficiency virus reverse transcriptase with alkaloids].

Gudima SO, Memelova LV, Borodulin VB, Pokholok DK, Mednikov BM, Tolkachev ON, Kochetkov SN.

Mol Biol (Mosk). 1994 Nov-Dec;28(6):1308-14. Russian.

PMID:
7533889
24.

[Characteristics of murine chromosome 17 containing three tumor necrosis factor family genes, including the gene of the transmembrane subunit of lymphotoxin].

Kuprash DV, Alimzhanov MB, Pokholok DK, Kozlov SV, Novobrantseva TI, Turetskaia RL, Nedospasov SA.

Dokl Akad Nauk. 1994 Aug;337(5):683-6. Russian. No abstract available.

PMID:
7987231
25.
26.

Interactions of the HIV-1 reverse transcriptase 'AZT-resistant' mutant with substrates and AZT-TP.

Pokholok DK, Gudima SO, Yesipov DS, Dobrynin VN, Rechinsky VO, Kochetkov SN.

FEBS Lett. 1993 Jul 5;325(3):237-41.

27.

[Site-specific mutagenesis of residue Lys-172 of phage T7 RNA polymerase: characterization of transcription properties of mutant proteins].

Liakhov DL, Il'genfrits Kh, Chernov BK, Dragan SM, Rechinskiĭ VO, Pokholok DK, Tunitskaia VL, Kochetkov SN.

Mol Biol (Mosk). 1992 Sep-Oct;26(5):1022-35. Russian.

PMID:
1470170

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