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Items: 1 to 50 of 59

1.

Two distinct sets of Ca2+ and K+ channels are activated at different membrane potentials by the climbing fibre synaptic potential in Purkinje neuron dendrites.

Ait Ouares K, Filipis L, Tzilivaki A, Poirazi P, Canepari M.

J Neurosci. 2019 Jan 10. pii: 2155-18. doi: 10.1523/JNEUROSCI.2155-18.2018. [Epub ahead of print]

PMID:
30630881
2.

Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory.

Frank AC, Huang S, Zhou M, Gdalyahu A, Kastellakis G, Silva TK, Lu E, Wen X, Poirazi P, Trachtenberg JT, Silva AJ.

Nat Commun. 2018 Jan 29;9(1):422. doi: 10.1038/s41467-017-02751-2.

3.

…with Love, from Post to Pre.

Poirazi P, Kastellakis G.

Neuron. 2017 Sep 27;96(1):9-10. doi: 10.1016/j.neuron.2017.09.022.

4.

Basal tree complexity shapes functional pathways in the prefrontal cortex.

Papoutsi A, Kastellakis G, Poirazi P.

J Neurophysiol. 2017 Oct 1;118(4):1970-1983. doi: 10.1152/jn.00099.2017. Epub 2017 Jul 12.

5.

Synaptic plasticity in dendrites: complications and coping strategies.

Mel BW, Schiller J, Poirazi P.

Curr Opin Neurobiol. 2017 Apr;43:177-186. doi: 10.1016/j.conb.2017.03.012. Epub 2017 Apr 25. Review.

PMID:
28453975
6.

Introduction to the Computational Neuroscience Special Section.

Remy S, Poirazi P, Papoutsi A.

Eur J Neurosci. 2017 Apr;45(8):998-999. doi: 10.1111/ejn.13562. No abstract available.

PMID:
28332742
7.

The FENS-Kavli Network for Excellence in Neuroscience: Advancing science through collaboration and advocacy.

Poirazi P, Hall B.

Synapse. 2017 Jun;71(6). doi: 10.1002/syn.21975. Epub 2017 Apr 21. No abstract available.

PMID:
28321916
8.

Pattern separation in the hippocampus through the eyes of computational modeling.

Chavlis S, Poirazi P.

Synapse. 2017 Jun;71(6). doi: 10.1002/syn.21972. Epub 2017 Mar 27. Review.

PMID:
28316111
9.

The perfect grant and how to get it.

Poirazi P.

Nature. 2017 Mar 7;543(7644):151. doi: 10.1038/543151a. No abstract available.

PMID:
28277521
10.

In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice.

Danielson NB, Turi GF, Ladow M, Chavlis S, Petrantonakis PC, Poirazi P, Losonczy A.

Neuron. 2017 Feb 8;93(3):552-559.e4. doi: 10.1016/j.neuron.2016.12.019. Epub 2017 Jan 26.

11.

A Novel and Simple Spike Sorting Implementation.

Petrantonakis PC, Poirazi P.

IEEE Trans Neural Syst Rehabil Eng. 2017 Apr;25(4):323-333. doi: 10.1109/TNSRE.2016.2640858. Epub 2016 Dec 15.

PMID:
28113325
12.

Linking Memories across Time via Neuronal and Dendritic Overlaps in Model Neurons with Active Dendrites.

Kastellakis G, Silva AJ, Poirazi P.

Cell Rep. 2016 Nov 1;17(6):1491-1504. doi: 10.1016/j.celrep.2016.10.015.

13.

Dendrites of dentate gyrus granule cells contribute to pattern separation by controlling sparsity.

Chavlis S, Petrantonakis PC, Poirazi P.

Hippocampus. 2017 Jan;27(1):89-110. doi: 10.1002/hipo.22675. Epub 2016 Nov 10. Erratum in: Hippocampus. 2017 Apr;27(4):477-478.

14.

CoMuS: simulating coalescent histories and polymorphic data from multiple species.

Papadantonakis S, Poirazi P, Pavlidis P.

Mol Ecol Resour. 2016 Nov;16(6):1435-1448. doi: 10.1111/1755-0998.12544. Epub 2016 Jun 23.

PMID:
27238297
15.

Balancing family with a successful career in neuroscience.

Poirazi P, Belin D, Gräff J, Hanganu-Opatz IL, López-Bendito G.

Eur J Neurosci. 2016 Jul;44(2):1797-803. doi: 10.1111/ejn.13280. Epub 2016 Jun 13. No abstract available.

PMID:
27206994
16.

Opening up: open access publishing, data sharing, and how they can influence your neuroscience career.

Spires-Jones TL, Poirazi P, Grubb MS.

Eur J Neurosci. 2016 Jun;43(11):1413-9. doi: 10.1111/ejn.13234. Epub 2016 Apr 6. No abstract available.

PMID:
26950407
17.

REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells.

Bozelos P, Stefanou SS, Bouloukakis G, Melachrinos C, Poirazi P.

Front Neuroanat. 2016 Jan 6;9:156. doi: 10.3389/fnana.2015.00156. eCollection 2015.

18.

The road to independence: how to get funding in neuroscience.

Yaksi E, Poirazi P, Hanganu-Opatz I.

Eur J Neurosci. 2016 Mar;43(5):603-7. doi: 10.1111/ejn.13169. Epub 2016 Feb 24. No abstract available.

PMID:
26750206
19.

A Simple Method to Simultaneously Detect and Identify Spikes from Raw Extracellular Recordings.

Petrantonakis PC, Poirazi P.

Front Neurosci. 2015 Dec 2;9:452. doi: 10.3389/fnins.2015.00452. eCollection 2015.

20.

Emerging applications of read profiles towards the functional annotation of the genome.

Pundhir S, Poirazi P, Gorodkin J.

Front Genet. 2015 May 19;6:188. doi: 10.3389/fgene.2015.00188. eCollection 2015. Review.

21.

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.

Karathanasis N, Tsamardinos I, Poirazi P.

PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151. eCollection 2015.

22.

The Hitchhiker's Guide to a Neuroscience Career.

Joëls M, Hoogenraad CC, Poirazi P, Di Luca M.

Neuron. 2015 May 6;86(3):613-6. doi: 10.1016/j.neuron.2015.04.002.

23.

A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop.

Cutsuridis V, Poirazi P.

Neurobiol Learn Mem. 2015 Apr;120:69-83. doi: 10.1016/j.nlm.2015.02.002. Epub 2015 Feb 24.

PMID:
25721691
24.

Dentate Gyrus circuitry features improve performance of sparse approximation algorithms.

Petrantonakis PC, Poirazi P.

PLoS One. 2015 Jan 30;10(1):e0117023. doi: 10.1371/journal.pone.0117023. eCollection 2015.

25.

Prediction of miRNA targets.

Oulas A, Karathanasis N, Louloupi A, Pavlopoulos GA, Poirazi P, Kalantidis K, Iliopoulos I.

Methods Mol Biol. 2015;1269:207-29. doi: 10.1007/978-1-4939-2291-8_13. Review.

PMID:
25577381
26.

Synaptic clustering within dendrites: an emerging theory of memory formation.

Kastellakis G, Cai DJ, Mednick SC, Silva AJ, Poirazi P.

Prog Neurobiol. 2015 Mar;126:19-35. doi: 10.1016/j.pneurobio.2014.12.002. Epub 2015 Jan 8. Review.

27.

A simulation study on the effects of dendritic morphology on layer V prefrontal pyramidal cell firing behavior.

Psarrou M, Stefanou SS, Papoutsi A, Tzilivaki A, Cutsuridis V, Poirazi P.

Front Cell Neurosci. 2014 Sep 16;8:287. doi: 10.3389/fncel.2014.00287. eCollection 2014.

28.

A compressed sensing perspective of hippocampal function.

Petrantonakis PC, Poirazi P.

Front Syst Neurosci. 2014 Aug 8;8:141. doi: 10.3389/fnsys.2014.00141. eCollection 2014.

29.

Dendritic nonlinearities reduce network size requirements and mediate ON and OFF states of persistent activity in a PFC microcircuit model.

Papoutsi A, Sidiropoulou K, Poirazi P.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003764. doi: 10.1371/journal.pcbi.1003764. eCollection 2014 Jul.

30.

GluA2 mRNA distribution and regulation by miR-124 in hippocampal neurons.

Ho VM, Dallalzadeh LO, Karathanasis N, Keles MF, Vangala S, Grogan T, Poirazi P, Martin KC.

Mol Cell Neurosci. 2014 Jul;61:1-12. doi: 10.1016/j.mcn.2014.04.006. Epub 2014 Apr 28.

31.

Don't use a cannon to kill the ... miRNA mosquito.

Karathanasis N, Tsamardinos I, Poirazi P.

Bioinformatics. 2014 Apr 1;30(7):1047-8. doi: 10.1093/bioinformatics/btu100. Epub 2014 Mar 10. No abstract available.

PMID:
24618472
32.

Modulatory effects of inhibition on persistent activity in a cortical microcircuit model.

Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K.

Front Neural Circuits. 2014 Jan 31;8:7. doi: 10.3389/fncir.2014.00007. eCollection 2014.

33.

Induction and modulation of persistent activity in a layer V PFC microcircuit model.

Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P.

Front Neural Circuits. 2013 Oct 9;7:161. doi: 10.3389/fncir.2013.00161. eCollection 2013.

34.
35.

Coding and decoding with dendrites.

Papoutsi A, Kastellakis G, Psarrou M, Anastasakis S, Poirazi P.

J Physiol Paris. 2014 Feb;108(1):18-27. doi: 10.1016/j.jphysparis.2013.05.003. Epub 2013 May 31. Review.

PMID:
23727338
36.

Computational modeling of the effects of amyloid-beta on release probability at hippocampal synapses.

Romani A, Marchetti C, Bianchi D, Leinekugel X, Poirazi P, Migliore M, Marie H.

Front Comput Neurosci. 2013 Jan 25;7:1. doi: 10.3389/fncom.2013.00001. eCollection 2013.

37.

A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2.

Oulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P.

RNA Biol. 2012 Sep;9(9):1196-207. doi: 10.4161/rna.21725. Epub 2012 Sep 1.

38.

Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons.

Sidiropoulou K, Poirazi P.

PLoS Comput Biol. 2012;8(4):e1002489. doi: 10.1371/journal.pcbi.1002489. Epub 2012 Apr 26.

39.

Distinguishing Linear vs. Non-Linear Integration in CA1 Radial Oblique Dendrites: It's about Time.

Gómez González JF, Mel BW, Poirazi P.

Front Comput Neurosci. 2011 Nov 14;5:44. doi: 10.3389/fncom.2011.00044. eCollection 2011.

40.

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities.

Tzamali E, Poirazi P, Tollis IG, Reczko M.

BMC Syst Biol. 2011 Oct 18;5:167. doi: 10.1186/1752-0509-5-167.

41.

Finding cancer-associated miRNAs: methods and tools.

Oulas A, Karathanasis N, Louloupi A, Poirazi P.

Mol Biotechnol. 2011 Sep;49(1):97-107. doi: 10.1007/s12033-011-9416-4. Review.

PMID:
21607762
42.

Encoding of spatio-temporal input characteristics by a CA1 pyramidal neuron model.

Pissadaki EK, Sidiropoulou K, Reczko M, Poirazi P.

PLoS Comput Biol. 2010 Dec 16;6(12):e1001038. doi: 10.1371/journal.pcbi.1001038.

43.

Utilization of SSCprofiler to predict a new miRNA gene.

Oulas A, Poirazi P.

Methods Mol Biol. 2011;676:243-52. doi: 10.1007/978-1-60761-863-8_17.

PMID:
20931402
44.

Computational identification of miRNAs involved in cancer.

Oulas A, Karathanasis N, Poirazi P.

Methods Mol Biol. 2011;676:23-41. doi: 10.1007/978-1-60761-863-8_2.

PMID:
20931387
45.

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.

Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.

PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843.

46.

Neurofibromin regulates corticostriatal inhibitory networks during working memory performance.

Shilyansky C, Karlsgodt KH, Cummings DM, Sidiropoulou K, Hardt M, James AS, Ehninger D, Bearden CE, Poirazi P, Jentsch JD, Cannon TD, Levine MS, Silva AJ.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13141-6. doi: 10.1073/pnas.1004829107. Epub 2010 Jul 12.

47.

CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala.

Zhou Y, Won J, Karlsson MG, Zhou M, Rogerson T, Balaji J, Neve R, Poirazi P, Silva AJ.

Nat Neurosci. 2009 Nov;12(11):1438-43. doi: 10.1038/nn.2405. Epub 2009 Sep 27.

48.

Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach.

Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P.

Nucleic Acids Res. 2009 Jun;37(10):3276-87. doi: 10.1093/nar/gkp120. Epub 2009 Mar 25.

49.

MicroRNAs and cancer-the search begins!

Oulas A, Reczko M, Poirazi P.

IEEE Trans Inf Technol Biomed. 2009 Jan;13(1):67-77. doi: 10.1109/TITB.2008.2007086. Review.

PMID:
19129025
50.

Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data.

Petalidis LP, Oulas A, Backlund M, Wayland MT, Liu L, Plant K, Happerfield L, Freeman TC, Poirazi P, Collins VP.

Mol Cancer Ther. 2008 May;7(5):1013-24. doi: 10.1158/1535-7163.MCT-07-0177. Epub 2008 Apr 29.

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