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Items: 1 to 50 of 54

1.

Resolving the phylogenetic position of Darwin's extinct ground sloth (Mylodon darwinii) using mitogenomic and nuclear exon data.

Delsuc F, Kuch M, Gibb GC, Hughes J, Szpak P, Southon J, Enk J, Duggan AT, Poinar HN.

Proc Biol Sci. 2018 May 16;285(1878). pii: 20180214. doi: 10.1098/rspb.2018.0214.

2.

A Single Amino Acid Change in the Response Regulator PhoP, Acquired during Yersinia pestis Evolution, Affects PhoP Target Gene Transcription and Polymyxin B Susceptibility.

Fukuto HS, Vadyvaloo V, McPhee JB, Poinar HN, Holmes EC, Bliska JB.

J Bacteriol. 2018 Apr 9;200(9). pii: e00050-18. doi: 10.1128/JB.00050-18. Print 2018 May 1.

3.

Correction: The paradox of HBV evolution as revealed from a 16th century mummy.

Patterson Ross Z, Klunk J, Fornaciari G, Giuffra V, Duchêne S, Duggan AT, Poinar D, Douglas MW, Eden JS, Holmes EC, Poinar HN.

PLoS Pathog. 2018 Feb 9;14(2):e1006887. doi: 10.1371/journal.ppat.1006887. eCollection 2018 Feb.

4.

The paradox of HBV evolution as revealed from a 16th century mummy.

Patterson Ross Z, Klunk J, Fornaciari G, Giuffra V, Duchêne S, Duggan AT, Poinar D, Douglas MW, Eden JS, Holmes EC, Poinar HN.

PLoS Pathog. 2018 Jan 4;14(1):e1006750. doi: 10.1371/journal.ppat.1006750. eCollection 2018 Jan. Erratum in: PLoS Pathog. 2018 Feb 9;14 (2):e1006887.

5.

Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus.

Mortimer TD, Annis DS, O'Neill MB, Bohr LL, Smith TM, Poinar HN, Mosher DF, Pepperell CS.

mSphere. 2017 Nov 29;2(6). pii: e00511-17. doi: 10.1128/mSphere.00511-17. eCollection 2017 Nov-Dec.

6.

Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum.

Porter AF, Duggan AT, Poinar HN, Holmes EC.

Viruses. 2017 Sep 28;9(10). pii: E276. doi: 10.3390/v9100276.

7.

A molecular portrait of maternal sepsis from Byzantine Troy.

Devault AM, Mortimer TD, Kitchen A, Kiesewetter H, Enk JM, Golding GB, Southon J, Kuch M, Duggan AT, Aylward W, Gardner SN, Allen JE, King AM, Wright G, Kuroda M, Kato K, Briggs DE, Fornaciari G, Holmes EC, Poinar HN, Pepperell CS.

Elife. 2017 Jan 10;6. pii: e20983. doi: 10.7554/eLife.20983.

8.

17th Century Variola Virus Reveals the Recent History of Smallpox.

Duggan AT, Perdomo MF, Piombino-Mascali D, Marciniak S, Poinar D, Emery MV, Buchmann JP, Duchêne S, Jankauskas R, Humphreys M, Golding GB, Southon J, Devault A, Rouillard JM, Sahl JW, Dutour O, Hedman K, Sajantila A, Smith GL, Holmes EC, Poinar HN.

Curr Biol. 2016 Dec 19;26(24):3407-3412. doi: 10.1016/j.cub.2016.10.061. Epub 2016 Dec 8.

9.

Plasmodium falciparum malaria in 1st-2nd century CE southern Italy.

Marciniak S, Prowse TL, Herring DA, Klunk J, Kuch M, Duggan AT, Bondioli L, Holmes EC, Poinar HN.

Curr Biol. 2016 Dec 5;26(23):R1220-R1222. doi: 10.1016/j.cub.2016.10.016.

10.

Estimation of Gene Insertion/Deletion Rates with Missing Data.

Dang UJ, Devault AM, Mortimer TD, Pepperell CS, Poinar HN, Golding GB.

Genetics. 2016 Oct;204(2):513-529. Epub 2016 Aug 26.

11.

The phylogenetic affinities of the extinct glyptodonts.

Delsuc F, Gibb GC, Kuch M, Billet G, Hautier L, Southon J, Rouillard JM, Fernicola JC, Vizcaíno SF, MacPhee RD, Poinar HN.

Curr Biol. 2016 Feb 22;26(4):R155-6. doi: 10.1016/j.cub.2016.01.039.

12.

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus.

Bos KI, Herbig A, Sahl J, Waglechner N, Fourment M, Forrest SA, Klunk J, Schuenemann VJ, Poinar D, Kuch M, Golding GB, Dutour O, Keim P, Wagner DM, Holmes EC, Krause J, Poinar HN.

Elife. 2016 Jan 21;5:e12994. doi: 10.7554/eLife.12994.

13.

Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans.

Gibb GC, Condamine FL, Kuch M, Enk J, Moraes-Barros N, Superina M, Poinar HN, Delsuc F.

Mol Biol Evol. 2016 Mar;33(3):621-42. doi: 10.1093/molbev/msv250. Epub 2015 Nov 9.

14.

Correction to 'Ancient DNA and the tropics: a rodent's tale'.

Gutiérrez-García TA, Vázquez-Domínguez E, Arroyo-Cabrales J, Kuch M, Enk J, King C, Poinar HN.

Biol Lett. 2015 Mar;11(3). pii: 20150111. doi: 10.1098/rsbl.2015.0111.

15.

Ancient human genomics: the methodology behind reconstructing evolutionary pathways.

Marciniak S, Klunk J, Devault A, Enk J, Poinar HN.

J Hum Evol. 2015 Feb;79:21-34. doi: 10.1016/j.jhevol.2014.11.003. Epub 2015 Jan 15.

PMID:
25601038
16.

Ancient DNA and the tropics: a rodent's tale.

Gutiérrez-García TA, Vázquez-Domínguez E, Arroyo-Cabrales J, Kuch M, Enk J, King C, Poinar HN.

Biol Lett. 2014 Jun;10(6). pii: 20140224. doi: 10.1098/rsbl.2014.0224. Erratum in: Biol Lett. 2015 Mar;11(3). pii: 20150111. doi: 10.1098/rsbl.2015.0111.

17.

Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array.

Devault AM, McLoughlin K, Jaing C, Gardner S, Porter TM, Enk JM, Thissen J, Allen J, Borucki M, DeWitte SN, Dhody AN, Poinar HN.

Sci Rep. 2014 Mar 6;4:4245. doi: 10.1038/srep04245.

18.

Ancient whole genome enrichment using baits built from modern DNA.

Enk JM, Devault AM, Kuch M, Murgha YE, Rouillard JM, Poinar HN.

Mol Biol Evol. 2014 May;31(5):1292-4. doi: 10.1093/molbev/msu074. Epub 2014 Feb 13.

PMID:
24531081
19.

Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

Devault AM, Golding GB, Waglechner N, Enk JM, Kuch M, Tien JH, Shi M, Fisman DN, Dhody AN, Forrest S, Bos KI, Earn DJ, Holmes EC, Poinar HN.

N Engl J Med. 2014 Jan 23;370(4):334-40. doi: 10.1056/NEJMoa1308663. Epub 2014 Jan 8.

20.

Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small-scale reproducibility.

Porter TM, Golding GB, King C, Froese D, Zazula G, Poinar HN.

Mol Ecol Resour. 2013 Sep;13(5):798-810. doi: 10.1111/1755-0998.12124. Epub 2013 May 20.

PMID:
23694692
21.

Yersinia pestis: new evidence for an old infection.

Bos KI, Stevens P, Nieselt K, Poinar HN, Dewitte SN, Krause J.

PLoS One. 2012;7(11):e49803. doi: 10.1371/journal.pone.0049803. Epub 2012 Nov 28.

22.

Case study: ancient sloth DNA recovered from hairs preserved in paleofeces.

Clack AA, Macphee RD, Poinar HN.

Methods Mol Biol. 2012;840:51-6. doi: 10.1007/978-1-61779-516-9_7.

PMID:
22237521
23.

A draft genome of Yersinia pestis from victims of the Black Death.

Bos KI, Schuenemann VJ, Golding GB, Burbano HA, Waglechner N, Coombes BK, McPhee JB, DeWitte SN, Meyer M, Schmedes S, Wood J, Earn DJ, Herring DA, Bauer P, Poinar HN, Krause J.

Nature. 2011 Oct 12;478(7370):506-10. doi: 10.1038/nature10549. Erratum in: Nature. 2011 Dec 8;480(7376):278.

24.

Antibiotic resistance is ancient.

D'Costa VM, King CE, Kalan L, Morar M, Sung WW, Schwarz C, Froese D, Zazula G, Calmels F, Debruyne R, Golding GB, Poinar HN, Wright GD.

Nature. 2011 Aug 31;477(7365):457-61. doi: 10.1038/nature10388.

PMID:
21881561
25.

Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death.

Schuenemann VJ, Bos K, DeWitte S, Schmedes S, Jamieson J, Mittnik A, Forrest S, Coombes BK, Wood JW, Earn DJ, White W, Krause J, Poinar HN.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):E746-52. doi: 10.1073/pnas.1105107108. Epub 2011 Aug 29.

26.

Mylodon darwinii DNA sequences from ancient fecal hair shafts.

Clack AA, MacPhee RD, Poinar HN.

Ann Anat. 2012 Jan 20;194(1):26-30. doi: 10.1016/j.aanat.2011.05.001. Epub 2011 May 17. Review.

PMID:
21640569
27.

Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics.

Anderson-Carpenter LL, McLachlan JS, Jackson ST, Kuch M, Lumibao CY, Poinar HN.

BMC Evol Biol. 2011 Jan 27;11:30. doi: 10.1186/1471-2148-11-30.

28.

Herald waves of cholera in nineteenth century London.

Tien JH, Poinar HN, Fisman DN, Earn DJ.

J R Soc Interface. 2011 May 6;8(58):756-60. doi: 10.1098/rsif.2010.0494. Epub 2010 Dec 1.

29.

Quantitative assessment of the sensitivity of various commercial reverse transcriptases based on armored HIV RNA.

Okello JB, Rodriguez L, Poinar D, Bos K, Okwi AL, Bimenya GS, Sewankambo NK, Henry KR, Kuch M, Poinar HN.

PLoS One. 2010 Nov 10;5(11):e13931. doi: 10.1371/journal.pone.0013931.

30.

Time dependency of molecular rates in ancient DNA data sets, a sampling artifact?

Debruyne R, Poinar HN.

Syst Biol. 2009 Jun;58(3):348-60. doi: 10.1093/sysbio/syp028. Epub 2009 Jul 1. No abstract available.

PMID:
20525589
31.

Comparison of methods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissues.

Okello JB, Zurek J, Devault AM, Kuch M, Okwi AL, Sewankambo NK, Bimenya GS, Poinar D, Poinar HN.

Anal Biochem. 2010 May 1;400(1):110-7. doi: 10.1016/j.ab.2010.01.014. Epub 2010 Jan 15.

PMID:
20079706
32.

Out of America: ancient DNA evidence for a new world origin of late quaternary woolly mammoths.

Debruyne R, Chu G, King CE, Bos K, Kuch M, Schwarz C, Szpak P, Gröcke DR, Matheus P, Zazula G, Guthrie D, Froese D, Buigues B, de Marliave C, Flemming C, Poinar D, Fisher D, Southon J, Tikhonov AN, MacPhee RD, Poinar HN.

Curr Biol. 2008 Sep 9;18(17):1320-6. doi: 10.1016/j.cub.2008.07.061.

33.

Ancient biomolecules from deep ice cores reveal a forested southern Greenland.

Willerslev E, Cappellini E, Boomsma W, Nielsen R, Hebsgaard MB, Brand TB, Hofreiter M, Bunce M, Poinar HN, Dahl-Jensen D, Johnsen S, Steffensen JP, Bennike O, Schwenninger JL, Nathan R, Armitage S, de Hoog CJ, Alfimov V, Christl M, Beer J, Muscheler R, Barker J, Sharp M, Penkman KE, Haile J, Taberlet P, Gilbert MT, Casoli A, Campani E, Collins MJ.

Science. 2007 Jul 6;317(5834):111-4.

34.

Isolation of nucleic acids and cultures from fossil ice and permafrost.

Willerslev E, Hansen AJ, Poinar HN.

Trends Ecol Evol. 2004 Mar;19(3):141-7.

PMID:
16701245
35.

Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.

Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC.

Science. 2006 Jan 20;311(5759):392-4. Epub 2005 Dec 20.

36.

Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes.

Thalmann O, Hebler J, Poinar HN, Pääbo S, Vigilant L.

Mol Ecol. 2004 Feb;13(2):321-35.

PMID:
14717890
37.

Molecular caving.

Hofreiter M, Mead JI, Martin P, Poinar HN.

Curr Biol. 2003 Sep 16;13(18):R693-5. No abstract available.

38.

The genetic secrets some fossils hold.

Poinar HN.

Acc Chem Res. 2002 Aug;35(8):676-84. Review.

PMID:
12186573
39.

Molecular analysis of an 11,700-year-old rodent midden from the Atacama Desert, Chile.

Kuch M, Rohland N, Betancourt JL, Latorre C, Steppan S, Poinar HN.

Mol Ecol. 2002 May;11(5):913-24.

PMID:
11975707
40.

Ancient DNA.

Hofreiter M, Serre D, Poinar HN, Kuch M, Pääbo S.

Nat Rev Genet. 2001 May;2(5):353-9. Review.

PMID:
11331901
41.

A molecular analysis of dietary diversity for three archaic Native Americans.

Poinar HN, Kuch M, Sobolik KD, Barnes I, Stankiewicz AB, Kuder T, Spaulding WG, Bryant VM, Cooper A, Pääbo S.

Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4317-22.

42.

A molecular analysis of ground sloth diet through the last glaciation.

Hofreiter M, Poinar HN, Spaulding WG, Bauer K, Martin PS, Possnert G, Pääbo S.

Mol Ecol. 2000 Dec;9(12):1975-84.

PMID:
11123610
43.

Ancient DNA: do it right or not at all.

Cooper A, Poinar HN.

Science. 2000 Aug 18;289(5482):1139. No abstract available.

PMID:
10970224
44.

Preservation of DNA from endangered species.

Poinar HN, Eglinton G.

Science. 2000 Aug 4;289(5480):726; author reply 726-7. No abstract available.

PMID:
10950715
45.

DNA from fossils: the past and the future.

Poinar HN.

Acta Paediatr Suppl. 1999 Dec;88(433):133-40.

PMID:
10626565
46.

Protein preservation and DNA retrieval from ancient tissues.

Poinar HN, Stankiewicz BA.

Proc Natl Acad Sci U S A. 1999 Jul 20;96(15):8426-31.

47.

Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis.

Poinar HN, Hofreiter M, Spaulding WG, Martin PS, Stankiewicz BA, Bland H, Evershed RP, Possnert G, Pääbo S.

Science. 1998 Jul 17;281(5375):402-6.

48.

Neandertal genetics.

Cooper A, Poinar HN, Pääbo S, Radovcić J, Debénath A, Caparros M, Barroso-Ruiz C, Bertranpetit J, Nielsen-Marsh C, Hedges RE, Sykes B.

Science. 1997 Aug 22;277(5329):1021-4. No abstract available.

PMID:
9289843
49.
50.

Amino acid racemization and the preservation of ancient DNA.

Poinar HN, Höss M, Bada JL, Pääbo S.

Science. 1996 May 10;272(5263):864-6.

PMID:
8629020

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