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Items: 1 to 50 of 51

1.

Rodent Activity Detector (RAD), an Open Source Device for Measuring Activity in Rodent Home Cages.

Matikainen-Ankney BA, Garmendia-Cedillos M, Ali M, Krynitsky J, Salem G, Miyazaki NL, Pohida T, Kravitz AV.

eNeuro. 2019 Jul 10;6(4). pii: ENEURO.0160-19.2019. doi: 10.1523/ENEURO.0160-19.2019. Print 2019 Jul/Aug.

2.

Fully automated prostate whole gland and central gland segmentation on MRI using holistically nested networks with short connections.

Cheng R, Lay N, Roth HR, Turkbey B, Jin D, Gandler W, McCreedy ES, Pohida T, Pinto P, Choyke P, McAuliffe MJ, Summers RM.

J Med Imaging (Bellingham). 2019 Apr;6(2):024007. doi: 10.1117/1.JMI.6.2.024007. Epub 2019 Jun 5.

PMID:
31205977
3.

Spatial control of oxygen delivery to three-dimensional cultures alters cancer cell growth and gene expression.

Wulftange WJ, Rose MA, Garmendia-Cedillos M, da Silva D, Poprawski JE, Srinivasachar D, Sullivan T, Lim L, Bliskovsky VV, Hall MD, Pohida TJ, Robey RW, Morgan NY, Gottesman MM.

J Cell Physiol. 2019 Apr 22. doi: 10.1002/jcp.28665. [Epub ahead of print]

PMID:
31012116
4.

Three-Dimensional Pose Estimation for Laboratory Mouse From Monocular Images.

Salem G, Krynitsky J, Hayes M, Pohida T, Burgos-Artizzu X.

IEEE Trans Image Process. 2019 Sep;28(9):4273-4287. doi: 10.1109/TIP.2019.2908796. Epub 2019 Apr 1.

PMID:
30946667
5.

Enhanced Sample Handling for Analytical Ultracentrifugation with 3D-Printed Centerpieces.

To SC, Brautigam CA, Chaturvedi SK, Bollard MT, Krynitsky J, Kakareka JW, Pohida TJ, Zhao H, Schuck P.

Anal Chem. 2019 May 7;91(9):5866-5873. doi: 10.1021/acs.analchem.9b00202. Epub 2019 Apr 15.

PMID:
30933465
6.

Towards reduction of SAR in scaling up in vivo pulsed EPR imaging to larger objects.

Pursley R, Enomoto A, Wu H, Brender JR, Pohida T, Subramanian S, Krishna MC, Devasahayam N.

J Magn Reson. 2019 Feb;299:42-48. doi: 10.1016/j.jmr.2018.12.011. Epub 2018 Dec 14.

7.

Reliability of a Novel Video-Based Method for Assessing Age-Related Changes in Upper Limb Kinematics.

Pupo DA, Kakareka JW, Krynitsky J, Leggio L, Pohida T, Studenski S, Harvey BK.

Front Aging Neurosci. 2018 Sep 24;10:281. doi: 10.3389/fnagi.2018.00281. eCollection 2018.

8.

Measuring Risky Driving Behavior Using an mHealth Smartphone App: Development and Evaluation of gForce.

Freidlin RZ, Dave AD, Espey BG, Stanley ST, Garmendia MA, Pursley R, Ehsani JP, Simons-Morton BG, Pohida TJ.

JMIR Mhealth Uhealth. 2018 Apr 19;6(4):e69. doi: 10.2196/mhealth.9290.

9.

Physiological Recording in the MRI Environment (PRiME): MRI-Compatible Hemodynamic Recording System.

Kakareka JW, Faranesh AZ, Pursley RH, Campbell-Washburn A, Herzka DA, Rogers T, Kanter J, Ratnayaka K, Lederman RJ, Pohida TJ.

IEEE J Transl Eng Health Med. 2018 Mar 1;6:4100112. doi: 10.1109/JTEHM.2018.2807813. eCollection 2018.

10.

Accelerated and Improved Differentiation of Retinal Organoids from Pluripotent Stem Cells in Rotating-Wall Vessel Bioreactors.

DiStefano T, Chen HY, Panebianco C, Kaya KD, Brooks MJ, Gieser L, Morgan NY, Pohida T, Swaroop A.

Stem Cell Reports. 2018 Jan 9;10(1):300-313. doi: 10.1016/j.stemcr.2017.11.001. Epub 2017 Dec 7.

11.

Automatic magnetic resonance prostate segmentation by deep learning with holistically nested networks.

Cheng R, Roth HR, Lay N, Lu L, Turkbey B, Gandler W, McCreedy ES, Pohida T, Pinto PA, Choyke P, McAuliffe MJ, Summers RM.

J Med Imaging (Bellingham). 2017 Oct;4(4):041302. doi: 10.1117/1.JMI.4.4.041302. Epub 2017 Aug 21.

12.

3D-Printing for Analytical Ultracentrifugation.

Desai A, Krynitsky J, Pohida TJ, Zhao H, Schuck P.

PLoS One. 2016 Aug 15;11(8):e0155201. doi: 10.1371/journal.pone.0155201. eCollection 2016.

13.

Rapid diagnosis of lymph node metastasis in breast cancer using a new fluorescent method with γ-glutamyl hydroxymethyl rhodamine green.

Shinden Y, Ueo H, Tobo T, Gamachi A, Utou M, Komatsu H, Nambara S, Saito T, Ueda M, Hirata H, Sakimura S, Takano Y, Uchi R, Kurashige J, Akiyoshi S, Iguchi T, Eguchi H, Sugimachi K, Kubota Y, Kai Y, Shibuta K, Kijima Y, Yoshinaka H, Natsugoe S, Mori M, Maehara Y, Sakabe M, Kamiya M, Kakareka JW, Pohida TJ, Choyke PL, Kobayashi H, Ueo H, Urano Y, Mimori K.

Sci Rep. 2016 Jun 9;6:27525. doi: 10.1038/srep27525.

14.

Rapid intraoperative visualization of breast lesions with γ-glutamyl hydroxymethyl rhodamine green.

Ueo H, Shinden Y, Tobo T, Gamachi A, Udo M, Komatsu H, Nambara S, Saito T, Ueda M, Hirata H, Sakimura S, Takano Y, Uchi R, Kurashige J, Akiyoshi S, Iguchi T, Eguchi H, Sugimachi K, Kubota Y, Kai Y, Shibuta K, Kijima Y, Yoshinaka H, Natsugoe S, Mori M, Maehara Y, Sakabe M, Kamiya M, Kakareka JW, Pohida TJ, Choyke PL, Kobayashi H, Ueo H, Urano Y, Mimori K.

Sci Rep. 2015 Jul 13;5:12080. doi: 10.1038/srep12080.

15.

Atlas based AAM and SVM model for fully automatic MRI prostate segmentation.

Cheng R, Turkbey B, Gandler W, Agarwal HK, Shah VP, Bokinsky A, McCreedy E, Wang S, Sankineni S, Bernardo M, Pohida T, Choyke P, McAuliffe MJ.

Conf Proc IEEE Eng Med Biol Soc. 2014;2014:2881-5. doi: 10.1109/EMBC.2014.6944225.

PMID:
25570593
16.

Multiple redundant medulla projection neurons mediate color vision in Drosophila.

Melnattur KV, Pursley R, Lin TY, Ting CY, Smith PD, Pohida T, Lee CH.

J Neurogenet. 2014 Sep-Dec;28(3-4):374-88. doi: 10.3109/01677063.2014.891590. Epub 2014 Apr 28.

17.

SCORHE: a novel and practical approach to video monitoring of laboratory mice housed in vivarium cage racks.

Salem GH, Dennis JU, Krynitsky J, Garmendia-Cedillos M, Swaroop K, Malley JD, Pajevic S, Abuhatzira L, Bustin M, Gillet JP, Gottesman MM, Mitchell JB, Pohida TJ.

Behav Res Methods. 2015 Mar;47(1):235-50. doi: 10.3758/s13428-014-0451-5.

18.

A hard-wired glutamatergic circuit pools and relays UV signals to mediate spectral preference in Drosophila.

Karuppudurai T, Lin TY, Ting CY, Pursley R, Melnattur KV, Diao F, White BH, Macpherson LJ, Gallio M, Pohida T, Lee CH.

Neuron. 2014 Feb 5;81(3):603-615. doi: 10.1016/j.neuron.2013.12.010.

19.

Microfabricated polymeric vessel mimetics for 3-D cancer cell culture.

Jaeger AA, Das CK, Morgan NY, Pursley RH, McQueen PG, Hall MD, Pohida TJ, Gottesman MM.

Biomaterials. 2013 Nov;34(33):8301-13. doi: 10.1016/j.biomaterials.2013.07.013. Epub 2013 Jul 30.

20.

Proteomic analysis of nuclei dissected from fixed rat brain tissue using expression microdissection.

Blackler AR, Morgan NY, Gao B, Olano LR, Armani MD, Romantseva E, Kakareka JW, Bonner RF, Mukherjee S, Xiao B, Tran K, Pohida TJ, Emmert-Buck MR, Tangrea MA, Markey SP.

Anal Chem. 2013 Aug 6;85(15):7139-45. doi: 10.1021/ac400691k. Epub 2013 Jul 19.

21.

Performance characteristics of a positron projection imager for mouse whole-body imaging.

Seidel J, Xi W, Kakareka JW, Pohida TJ, Jagoda EM, Green MV, Choyke PL.

Nucl Med Biol. 2013 Apr;40(3):321-30. doi: 10.1016/j.nucmedbio.2012.12.003. Epub 2013 Feb 9. Erratum in: Nucl Med Biol. 2013 Jul;40(5):717.

22.

Correlation of magnetic resonance imaging tumor volume with histopathology.

Turkbey B, Mani H, Aras O, Rastinehad AR, Shah V, Bernardo M, Pohida T, Daar D, Benjamin C, McKinney YL, Linehan WM, Wood BJ, Merino MJ, Choyke PL, Pinto PA.

J Urol. 2012 Oct;188(4):1157-1163. doi: 10.1016/j.juro.2012.06.011. Epub 2012 Aug 15.

23.

Decision support system for localizing prostate cancer based on multiparametric magnetic resonance imaging.

Shah V, Turkbey B, Mani H, Pang Y, Pohida T, Merino MJ, Pinto PA, Choyke PL, Bernardo M.

Med Phys. 2012 Jul;39(7):4093-103. doi: 10.1118/1.4722753.

24.

A spin echo sequence with a single-sided bipolar diffusion gradient pulse to obtain snapshot diffusion weighted images in moving media.

Freidlin RZ, Kakareka JW, Pohida TJ, Komlosh ME, Basser PJ.

J Magn Reson. 2012 Aug;221:24-31. doi: 10.1016/j.jmr.2012.04.010. Epub 2012 Apr 28.

25.

Three-dimensional motion tracking for high-resolution optical microscopy, in vivo.

Bakalar M, Schroeder JL, Pursley R, Pohida TJ, Glancy B, Taylor J, Chess D, Kellman P, Xue H, Balaban RS.

J Microsc. 2012 Jun;246(3):237-247. doi: 10.1111/j.1365-2818.2012.03613.x.

26.

11C-Acetate PET/CT in localized prostate cancer: a study with MRI and histopathologic correlation.

Mena E, Turkbey B, Mani H, Adler S, Valera VA, Bernardo M, Shah V, Pohida T, McKinney Y, Kwarteng G, Daar D, Lindenberg ML, Eclarinal P, Wade R, Linehan WM, Merino MJ, Pinto PA, Choyke PL, Kurdziel KA.

J Nucl Med. 2012 Apr;53(4):538-45. doi: 10.2967/jnumed.111.096032. Epub 2012 Feb 17.

27.

A hematoma detector-a practical application of instrumental motion as signal in near infra-red imaging.

Riley JD, Amyot F, Pohida T, Pursley R, Ardeshirpour Y, Kainerstorfer JM, Najafizadeh L, Chernomordik V, Smith P, Smirniotopoulos J, Wassermann EM, Gandjbakhche AH.

Biomed Opt Express. 2012 Jan 1;3(1):192-205. doi: 10.1364/BOE.3.000192. Epub 2011 Dec 20.

28.

Use of patient-specific MRI-based prostate mold for validation of multiparametric MRI in localization of prostate cancer.

Trivedi H, Turkbey B, Rastinehad AR, Benjamin CJ, Bernardo M, Pohida T, Shah V, Merino MJ, Wood BJ, Linehan WM, Venkatesan AM, Choyke PL, Pinto PA.

Urology. 2012 Jan;79(1):233-9. doi: 10.1016/j.urology.2011.10.002.

29.

Multiparametric 3T prostate magnetic resonance imaging to detect cancer: histopathological correlation using prostatectomy specimens processed in customized magnetic resonance imaging based molds.

Turkbey B, Mani H, Shah V, Rastinehad AR, Bernardo M, Pohida T, Pang Y, Daar D, Benjamin C, McKinney YL, Trivedi H, Chua C, Bratslavsky G, Shih JH, Linehan WM, Merino MJ, Choyke PL, Pinto PA.

J Urol. 2011 Nov;186(5):1818-24. doi: 10.1016/j.juro.2011.07.013. Epub 2011 Sep 25.

30.

Immunoguided microdissection techniques.

Tangrea MA, Hanson JC, Bonner RF, Pohida TJ, Rodriguez-Canales J, Emmert-Buck MR.

Methods Mol Biol. 2011;755:57-66. doi: 10.1007/978-1-61779-163-5_4.

31.

Expression microdissection adapted to commercial laser dissection instruments.

Hanson JC, Tangrea MA, Kim S, Armani MD, Pohida TJ, Bonner RF, Rodriguez-Canales J, Emmert-Buck MR.

Nat Protoc. 2011 Apr;6(4):457-67. doi: 10.1038/nprot.2010.202. Epub 2011 Mar 18.

32.

Rapid overlapping-volume acquisition and reconstruction (ROVAR): automated 3D tiling for high-resolution, large field-of-view optical microscopy.

Schroeder JL, Bakalar M, Pohida TJ, Balaban RS.

J Microsc. 2011 Jul;243(1):103-10. doi: 10.1111/j.1365-2818.2011.03490.x. Epub 2011 Feb 23.

33.

A portable fluorescence camera for testing surgical specimens in the operating room: description and early evaluation.

Kakareka JW, McCann TE, Kosaka N, Mitsunaga M, Morgan NY, Pohida TJ, Choyke PL, Kobayashi H.

Mol Imaging Biol. 2011 Oct;13(5):862-7. doi: 10.1007/s11307-010-0438-2.

34.

The neural processes underlying self-agency.

Nahab FB, Kundu P, Gallea C, Kakareka J, Pursley R, Pohida T, Miletta N, Friedman J, Hallett M.

Cereb Cortex. 2011 Jan;21(1):48-55. doi: 10.1093/cercor/bhq059. Epub 2010 Apr 8.

35.

MONICA: a compact, portable dual gamma camera system for mouse whole-body imaging.

Xi W, Seidel J, Kakareka JW, Pohida TJ, Milenic DE, Proffitt J, Majewski S, Weisenberger AG, Green MV, Choyke PL.

Nucl Med Biol. 2010 Apr;37(3):245-53. doi: 10.1016/j.nucmedbio.2009.12.003.

36.

Short communication: Subcellular motion compensation for minimally invasive microscopy, in vivo: evidence for oxygen gradients in resting muscle.

Schroeder JL, Luger-Hamer M, Pursley R, Pohida T, Chefd'hotel C, Kellman P, Balaban RS.

Circ Res. 2010 Apr 2;106(6):1129-33. doi: 10.1161/CIRCRESAHA.109.211946. Epub 2010 Feb 18.

37.

A method for correlating in vivo prostate magnetic resonance imaging and histopathology using individualized magnetic resonance-based molds.

Shah V, Pohida T, Turkbey B, Mani H, Merino M, Pinto PA, Choyke P, Bernardo M.

Rev Sci Instrum. 2009 Oct;80(10):104301. doi: 10.1063/1.3242697.

38.

Simultaneous measurements of fast optical and proton current kinetics in the bacteriorhodopsin photocycle using an enhanced spectrophotometer.

Kakareka JW, Smith PD, Pohida TJ, Hendler RW.

J Biochem Biophys Methods. 2008 Apr 24;70(6):1116-23. Epub 2007 Nov 17.

39.

A new strategy for fast radiofrequency CW EPR imaging: direct detection with rapid scan and rotating gradients.

Subramanian S, Koscielniak JW, Devasahayam N, Pursley RH, Pohida TJ, Krishna MC.

J Magn Reson. 2007 Jun;186(2):212-9. Epub 2007 Feb 8.

40.

Direct detection and time-locked subsampling applied to pulsed electron paramagnetic resonance imaging.

Pursley RH, Salem G, Pohida TJ, Devasahayam N, Subramanian S, Krishna MC.

Rev Sci Instrum. 2005 May;76(3):1-6.

41.

Effects of aging on current vocalization threshold in mice measured by a novel nociception assay.

Finkel JC, Besch VG, Hergen A, Kakareka J, Pohida T, Melzer JM, Koziol D, Wesley R, Quezado ZM.

Anesthesiology. 2006 Aug;105(2):360-9.

42.

Tumor-associated endothelial cells display GSTP1 and RARbeta2 promoter methylation in human prostate cancer.

Grover AC, Tangrea MA, Woodson KG, Wallis BS, Hanson JC, Chuaqui RF, Gillespie JW, Erickson HS, Bonner RF, Pohida TJ, Emmert-Buck MR, Libutti SK.

J Transl Med. 2006 Mar 2;4:13.

43.

Integration of digital signal processing technologies with pulsed electron paramagnetic resonance imaging.

Pursley RH, Salem G, Devasahayam N, Subramanian S, Koscielniak J, Krishna MC, Pohida TJ.

J Magn Reson. 2006 Feb;178(2):220-7. Epub 2005 Oct 21.

44.

Expression microdissection: operator-independent retrieval of cells for molecular profiling.

Tangrea MA, Chuaqui RF, Gillespie JW, Ahram M, Gannot G, Wallis BS, Best CJ, Linehan WM, Liotta LA, Pohida TJ, Bonner RF, Emmert-Buck MR.

Diagn Mol Pathol. 2004 Dec;13(4):207-12.

PMID:
15538110
45.

Stochastic excitation and Hadamard correlation spectroscopy with bandwidth extension in RF FT-EPR.

Pursley RH, Kakareka J, Salem G, Devasahayam N, Subramanian S, Tschudin RG, Krishna MC, Pohida TJ.

J Magn Reson. 2003 May;162(1):35-45.

46.

High frequency of BRAF mutations in nevi.

Pollock PM, Harper UL, Hansen KS, Yudt LM, Stark M, Robbins CM, Moses TY, Hostetter G, Wagner U, Kakareka J, Salem G, Pohida T, Heenan P, Duray P, Kallioniemi O, Hayward NK, Trent JM, Meltzer PS.

Nat Genet. 2003 Jan;33(1):19-20. Epub 2002 Nov 25.

PMID:
12447372
47.

High-speed data acquisition system and receiver configurations for time-domain radiofrequency electron paramagnetic resonance spectroscopy and imaging.

Subramanian S, Murugesan R, Devasahayam N, Cook JA, Afeworki M, Pohida T, Tschudin RG, Mitchell JB, Krishna MC.

J Magn Reson. 1999 Apr;137(2):379-88.

PMID:
10089172
48.

Laser capture microdissection of single cells from complex tissues.

Suarez-Quian CA, Goldstein SR, Pohida T, Smith PD, Peterson JI, Wellner E, Ghany M, Bonner RF.

Biotechniques. 1999 Feb;26(2):328-35.

49.

Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays.

Khan J, Simon R, Bittner M, Chen Y, Leighton SB, Pohida T, Smith PD, Jiang Y, Gooden GC, Trent JM, Meltzer PS.

Cancer Res. 1998 Nov 15;58(22):5009-13.

50.

A high speed optical multichannel analyzer.

Cole JW, Hendler RW, Smith PD, Fredrickson HA, Pohida TJ, Friauf WS.

J Biochem Biophys Methods. 1997 Dec 3;35(3):161-74.

PMID:
9470095

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