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Items: 12

1.

Global landscape of cell envelope protein complexes in Escherichia coli.

Babu M, Bundalovic-Torma C, Calmettes C, Phanse S, Zhang Q, Jiang Y, Minic Z, Kim S, Mehla J, Gagarinova A, Rodionova I, Kumar A, Guo H, Kagan O, Pogoutse O, Aoki H, Deineko V, Caufield JH, Holtzapple E, Zhang Z, Vastermark A, Pandya Y, Lai CC, El Bakkouri M, Hooda Y, Shah M, Burnside D, Hooshyar M, Vlasblom J, Rajagopala SV, Golshani A, Wuchty S, F Greenblatt J, Saier M, Uetz P, F Moraes T, Parkinson J, Emili A.

Nat Biotechnol. 2018 Jan;36(1):103-112. doi: 10.1038/nbt.4024. Epub 2017 Nov 27.

2.

An Unbiased Chemical Proteomics Method Identifies FabI as the Primary Target of 6-OH-BDE-47.

Peng H, Guo H, Pogoutse O, Wan C, Hu LZ, Ni Z, Emili A.

Environ Sci Technol. 2016 Oct 18;50(20):11329-11336. doi: 10.1021/acs.est.6b03541. Epub 2016 Oct 7.

PMID:
27682841
3.

Hsp110 is required for spindle length control.

Makhnevych T, Wong P, Pogoutse O, Vizeacoumar FJ, Greenblatt JF, Emili A, Houry WA.

J Cell Biol. 2012 Aug 20;198(4):623-36. doi: 10.1083/jcb.201111105.

4.

Target identification by chromatographic co-elution: monitoring of drug-protein interactions without immobilization or chemical derivatization.

Chan JN, Vuckovic D, Sleno L, Olsen JB, Pogoutse O, Havugimana P, Hewel JA, Bajaj N, Wang Y, Musteata MF, Nislow C, Emili A.

Mol Cell Proteomics. 2012 Jul;11(7):M111.016642. doi: 10.1074/mcp.M111.016642. Epub 2012 Feb 22.

5.

Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.

Babu M, Díaz-Mejía JJ, Vlasblom J, Gagarinova A, Phanse S, Graham C, Yousif F, Ding H, Xiong X, Nazarians-Armavil A, Alamgir M, Ali M, Pogoutse O, Pe'er A, Arnold R, Michaut M, Parkinson J, Golshani A, Whitfield C, Wodak SJ, Moreno-Hagelsieb G, Greenblatt JF, Emili A.

PLoS Genet. 2011 Nov;7(11):e1002377. doi: 10.1371/journal.pgen.1002377. Epub 2011 Nov 17.

6.

A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.

Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, Greenblatt J, Edwards AM, Yakunin AF.

Mol Microbiol. 2011 Jan;79(2):484-502. doi: 10.1111/j.1365-2958.2010.07465.x. Epub 2010 Dec 7.

7.

Synthetic peptide arrays for pathway-level protein monitoring by liquid chromatography-tandem mass spectrometry.

Hewel JA, Liu J, Onishi K, Fong V, Chandran S, Olsen JB, Pogoutse O, Schutkowski M, Wenschuh H, Winkler DF, Eckler L, Zandstra PW, Emili A.

Mol Cell Proteomics. 2010 Nov;9(11):2460-73. doi: 10.1074/mcp.M900456-MCP200. Epub 2010 May 13.

8.

Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli.

Babu M, Butland G, Pogoutse O, Li J, Greenblatt JF, Emili A.

Methods Mol Biol. 2009;564:373-400. doi: 10.1007/978-1-60761-157-8_22.

PMID:
19544035
9.

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.

Hu P, Janga SC, Babu M, Díaz-Mejía JJ, Butland G, Yang W, Pogoutse O, Guo X, Phanse S, Wong P, Chandran S, Christopoulos C, Nazarians-Armavil A, Nasseri NK, Musso G, Ali M, Nazemof N, Eroukova V, Golshani A, Paccanaro A, Greenblatt JF, Moreno-Hagelsieb G, Emili A.

PLoS Biol. 2009 Apr 28;7(4):e96. doi: 10.1371/journal.pbio.1000096.

10.

eSGA: E. coli synthetic genetic array analysis.

Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A.

Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239.

PMID:
18677321
11.

Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint.

Ghavidel A, Kislinger T, Pogoutse O, Sopko R, Jurisica I, Emili A.

Cell. 2007 Nov 30;131(5):915-26.

12.

Association with the origin recognition complex suggests a novel role for histone acetyltransferase Hat1p/Hat2p.

Suter B, Pogoutse O, Guo X, Krogan N, Lewis P, Greenblatt JF, Rine J, Emili A.

BMC Biol. 2007 Sep 19;5:38.

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