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Items: 17

1.

Detecting T cell receptors involved in immune responses from single repertoire snapshots.

Pogorelyy MV, Minervina AA, Shugay M, Chudakov DM, Lebedev YB, Mora T, Walczak AM.

PLoS Biol. 2019 Jun 13;17(6):e3000314. doi: 10.1371/journal.pbio.3000314. eCollection 2019 Jun.

2.

Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins.

Pogorelyy MV, Minervina AA, Touzel MP, Sycheva AL, Komech EA, Kovalenko EI, Karganova GG, Egorov ES, Komkov AY, Chudakov DM, Mamedov IZ, Mora T, Walczak AM, Lebedev YB.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12704-12709. doi: 10.1073/pnas.1809642115. Epub 2018 Nov 20.

3.

Exploring the pre-immune landscape of antigen-specific T cells.

Pogorelyy MV, Fedorova AD, McLaren JE, Ladell K, Bagaev DV, Eliseev AV, Mikelov AI, Koneva AE, Zvyagin IV, Price DA, Chudakov DM, Shugay M.

Genome Med. 2018 Aug 25;10(1):68. doi: 10.1186/s13073-018-0577-7.

4.

Characterization of the T-cell Repertoire after Autologous HSCT in Patients with Ankylosing Spondylitis.

Komech EA, Zvyagin IV, Pogorelyy MV, Mamedov IZ, Fedorenko DA, Lebedev YB.

Acta Naturae. 2018 Apr-Jun;10(2):48-57.

5.

The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging.

Egorov ES, Kasatskaya SA, Zubov VN, Izraelson M, Nakonechnaya TO, Staroverov DB, Angius A, Cucca F, Mamedov IZ, Rosati E, Franke A, Shugay M, Pogorelyy MV, Chudakov DM, Britanova OV.

Front Immunol. 2018 Jul 24;9:1618. doi: 10.3389/fimmu.2018.01618. eCollection 2018.

6.

Method for identification of condition-associated public antigen receptor sequences.

Pogorelyy MV, Minervina AA, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM.

Elife. 2018 Mar 13;7. pii: e33050. doi: 10.7554/eLife.33050.

7.

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

Komech EA, Pogorelyy MV, Egorov ES, Britanova OV, Rebrikov DV, Bochkova AG, Shmidt EI, Shostak NA, Shugay M, Lukyanov S, Mamedov IZ, Lebedev YB, Chudakov DM, Zvyagin IV.

Rheumatology (Oxford). 2018 Jun 1;57(6):1097-1104. doi: 10.1093/rheumatology/kex517.

PMID:
29481668
8.

Quantitative profiling reveals minor changes of T cell receptor repertoire in response to subunit inactivated influenza vaccine.

Sycheva AL, Pogorelyy MV, Komech EA, Minervina AA, Zvyagin IV, Staroverov DB, Chudakov DM, Lebedev YB, Mamedov IZ.

Vaccine. 2018 Mar 14;36(12):1599-1605. doi: 10.1016/j.vaccine.2018.02.027. Epub 2018 Feb 15.

PMID:
29454515
9.

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires.

Pogorelyy MV, Elhanati Y, Marcou Q, Sycheva AL, Komech EA, Nazarov VI, Britanova OV, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM.

PLoS Comput Biol. 2017 Jul 6;13(7):e1005572. doi: 10.1371/journal.pcbi.1005572. eCollection 2017 Jul.

10.

Reliability of immune receptor rearrangements as genetic markers for minimal residual disease monitoring.

Nazarov VI, Minervina AA, Komkov AY, Pogorelyy MV, Maschan MA, Olshanskaya YV, Zvyagin IV, Chudakov DM, Lebedev YB, Mamedov IZ.

Bone Marrow Transplant. 2016 Oct;51(10):1408-1410. doi: 10.1038/bmt.2016.148. Epub 2016 May 23. No abstract available.

PMID:
27214078
11.

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.

Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.

J Immunol. 2016 Jun 15;196(12):5005-13. doi: 10.4049/jimmunol.1600005. Epub 2016 May 13.

12.

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

Shugay M, Bagaev DV, Turchaninova MA, Bolotin DA, Britanova OV, Putintseva EV, Pogorelyy MV, Nazarov VI, Zvyagin IV, Kirgizova VI, Kirgizov KI, Skorobogatova EV, Chudakov DM.

PLoS Comput Biol. 2015 Nov 25;11(11):e1004503. doi: 10.1371/journal.pcbi.1004503. eCollection 2015 Nov.

13.

tcR: an R package for T cell receptor repertoire advanced data analysis.

Nazarov VI, Pogorelyy MV, Komech EA, Zvyagin IV, Bolotin DA, Shugay M, Chudakov DM, Lebedev YB, Mamedov IZ.

BMC Bioinformatics. 2015 May 28;16:175. doi: 10.1186/s12859-015-0613-1.

14.

The evidence for increased L1 activity in the site of human adult brain neurogenesis.

Kurnosov AA, Ustyugova SV, Nazarov VI, Minervina AA, Komkov AY, Shugay M, Pogorelyy MV, Khodosevich KV, Mamedov IZ, Lebedev YB.

PLoS One. 2015 Feb 17;10(2):e0117854. doi: 10.1371/journal.pone.0117854. eCollection 2015.

15.

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.

Zvyagin IV, Pogorelyy MV, Ivanova ME, Komech EA, Shugay M, Bolotin DA, Shelenkov AA, Kurnosov AA, Staroverov DB, Chudakov DM, Lebedev YB, Mamedov IZ.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5980-5. doi: 10.1073/pnas.1319389111. Epub 2014 Apr 7.

16.

Huge Overlap of Individual TCR Beta Repertoires.

Shugay M, Bolotin DA, Putintseva EV, Pogorelyy MV, Mamedov IZ, Chudakov DM.

Front Immunol. 2013 Dec 25;4:466. doi: 10.3389/fimmu.2013.00466. eCollection 2013. No abstract available.

17.

Mother and child T cell receptor repertoires: deep profiling study.

Putintseva EV, Britanova OV, Staroverov DB, Merzlyak EM, Turchaninova MA, Shugay M, Bolotin DA, Pogorelyy MV, Mamedov IZ, Bobrynina V, Maschan M, Lebedev YB, Chudakov DM.

Front Immunol. 2013 Dec 25;4:463. doi: 10.3389/fimmu.2013.00463. eCollection 2013.

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