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Items: 1 to 50 of 181

1.

The Photochemistry on Space Station (PSS) Experiment: Organic Matter under Mars-like Surface UV Radiation Conditions in Low Earth Orbit.

Stalport F, Rouquette L, Poch O, Dequaire T, Chaouche-Mechidal N, Payart S, Szopa C, Coll P, Chaput D, Jaber M, Raulin F, Cottin H.

Astrobiology. 2019 Aug;19(8):1037-1052. doi: 10.1089/ast.2018.2001. Epub 2019 Jul 17.

PMID:
31314573
2.

Bardet-Biedl syndrome: Antenatal presentation of forty-five fetuses with biallelic pathogenic variants in known Bardet-Biedl syndrome genes.

Mary L, Chennen K, Stoetzel C, Antin M, Leuvrey A, Nourisson E, Alanio-Detton E, Antal MC, Attié-Bitach T, Bouvagnet P, Bouvier R, Buenerd A, Clémenson A, Devisme L, Gasser B, Gilbert-Dussardier B, Guimiot F, Khau Van Kien P, Leroy B, Loget P, Martinovic J, Pelluard F, Perez MJ, Petit F, Pinson L, Rooryck-Thambo C, Poch O, Dollfus H, Schaefer E, Muller J.

Clin Genet. 2019 Mar;95(3):384-397. doi: 10.1111/cge.13500.

PMID:
30614526
3.

OrthoInspector 3.0: open portal for comparative genomics.

Nevers Y, Kress A, Defosset A, Ripp R, Linard B, Thompson JD, Poch O, Lecompte O.

Nucleic Acids Res. 2019 Jan 8;47(D1):D411-D418. doi: 10.1093/nar/gky1068.

4.

Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes.

Dila G, Michel CJ, Poch O, Ripp R, Thompson JD.

Biosystems. 2019 Jan;175:57-74. doi: 10.1016/j.biosystems.2018.10.014. Epub 2018 Oct 24.

PMID:
30367916
5.

PROBE: analysis and visualization of protein block-level evolution.

Kress A, Lecompte O, Poch O, Thompson JD.

Bioinformatics. 2018 Oct 1;34(19):3390-3392. doi: 10.1093/bioinformatics/bty367.

PMID:
29741582
6.

Enrichment of Circular Code Motifs in the Genes of the Yeast Saccharomyces cerevisiae.

Michel CJ, Ngoune VN, Poch O, Ripp R, Thompson JD.

Life (Basel). 2017 Dec 3;7(4). pii: E52. doi: 10.3390/life7040052.

7.

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers.

Allot A, Chennen K, Nevers Y, Poidevin L, Kress A, Ripp R, Thompson JD, Poch O, Lecompte O.

J Med Internet Res. 2017 Jun 16;19(6):e212. doi: 10.2196/jmir.6676.

8.

MiSynPat: An integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases.

Moulinier L, Ripp R, Castillo G, Poch O, Sissler M.

Hum Mutat. 2017 Oct;38(10):1316-1324. doi: 10.1002/humu.23277. Epub 2017 Jun 27.

9.

Insights into Ciliary Genes and Evolution from Multi-Level Phylogenetic Profiling.

Nevers Y, Prasad MK, Poidevin L, Chennen K, Allot A, Kress A, Ripp R, Thompson JD, Dollfus H, Poch O, Lecompte O.

Mol Biol Evol. 2017 Aug 1;34(8):2016-2034. doi: 10.1093/molbev/msx146.

10.

Remote Sensing of Potential Biosignatures from Rocky, Liquid, or Icy (Exo)Planetary Surfaces.

Poch O, Frey J, Roditi I, Pommerol A, Jost B, Thomas N.

Astrobiology. 2017 Mar;17(3):231-252. doi: 10.1089/ast.2016.1523. Epub 2017 Mar 10.

PMID:
28282216
11.

Identification and Characterization of MicroRNA Differentially Expressed in Macrophages Exposed to Porphyromonas gingivalis Infection.

Huck O, Al-Hashemi J, Poidevin L, Poch O, Davideau JL, Tenenbaum H, Amar S.

Infect Immun. 2017 Feb 23;85(3). pii: e00771-16. doi: 10.1128/IAI.00771-16. Print 2017 Mar.

12.

Identification of a Novel Homozygous Nonsense Mutation Confirms the Implication of GNAT1 in Rod-Cone Dystrophy.

Méjécase C, Laurent-Coriat C, Mayer C, Poch O, Mohand-Saïd S, Prévot C, Antonio A, Boyard F, Condroyer C, Michiels C, Blanchard S, Letexier M, Saraiva JP, Sahel JA, Audo I, Zeitz C.

PLoS One. 2016 Dec 15;11(12):e0168271. doi: 10.1371/journal.pone.0168271. eCollection 2016.

13.

Oxidants at the Surface of Mars: A Review in Light of Recent Exploration Results.

Lasne J, Noblet A, Szopa C, Navarro-González R, Cabane M, Poch O, Stalport F, François P, Atreya SK, Coll P.

Astrobiology. 2016 Dec;16(12):977-996. doi: 10.1089/ast.2016.1502. Epub 2016 Dec 7. Review.

PMID:
27925795
14.

LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system.

Vanhoutreve R, Kress A, Legrand B, Gass H, Poch O, Thompson JD.

BMC Bioinformatics. 2016 Jul 7;17(1):271. doi: 10.1186/s12859-016-1146-y.

15.

Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells.

Kole C, Berdugo N, Da Silva C, Aït-Ali N, Millet-Puel G, Pagan D, Blond F, Poidevin L, Ripp R, Fontaine V, Wincker P, Zack DJ, Sahel JA, Poch O, Léveillard T.

PLoS One. 2016 Mar 17;11(3):e0150758. doi: 10.1371/journal.pone.0150758. eCollection 2016.

16.

Ubiquitin Receptor Protein UBASH3B Drives Aurora B Recruitment to Mitotic Microtubules.

Krupina K, Kleiss C, Metzger T, Fournane S, Schmucker S, Hofmann K, Fischer B, Paul N, Porter IM, Raffelsberger W, Poch O, Swedlow JR, Brino L, Sumara I.

Dev Cell. 2016 Jan 11;36(1):63-78. doi: 10.1016/j.devcel.2015.12.017.

17.

Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes.

Bianchetti L, Tarabay Y, Lecompte O, Stote R, Poch O, Dejaegere A, Viville S.

BMC Evol Biol. 2015 Oct 12;15:222. doi: 10.1186/s12862-015-0506-y.

18.

Effect of nontronite smectite clay on the chemical evolution of several organic molecules under simulated martian surface ultraviolet radiation conditions.

Poch O, Jaber M, Stalport F, Nowak S, Georgelin T, Lambert JF, Szopa C, Coll P.

Astrobiology. 2015 Mar;15(3):221-37. doi: 10.1089/ast.2014.1230. Epub 2015 Mar 3.

PMID:
25734356
19.

Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse.

Romand R, Ripp R, Poidevin L, Boeglin M, Geffers L, Dollé P, Poch O.

PLoS One. 2015 Feb 23;10(2):e0118024. doi: 10.1371/journal.pone.0118024. eCollection 2015.

20.

The molecular signature of the stroma response in prostate cancer-induced osteoblastic bone metastasis highlights expansion of hematopoietic and prostate epithelial stem cell niches.

Özdemir BC, Hensel J, Secondini C, Wetterwald A, Schwaninger R, Fleischmann A, Raffelsberger W, Poch O, Delorenzi M, Temanni R, Mills IG, van der Pluijm G, Thalmann GN, Cecchini MG.

PLoS One. 2014 Dec 8;9(12):e114530. doi: 10.1371/journal.pone.0114530. eCollection 2014.

21.

[Bardet-Biedl syndrome: cilia and obesity - from genes to integrative approaches].

Chennen K, Scerbo MJ, Dollfus H, Poch O, Marion V.

Med Sci (Paris). 2014 Nov;30(11):1034-9. doi: 10.1051/medsci/20143011018. Epub 2014 Nov 10. Review. French.

22.

OrthoInspector 2.0: Software and database updates.

Linard B, Allot A, Schneider R, Morel C, Ripp R, Bigler M, Thompson JD, Poch O, Lecompte O.

Bioinformatics. 2015 Feb 1;31(3):447-8. doi: 10.1093/bioinformatics/btu642. Epub 2014 Oct 1.

23.

SIBIS: a Bayesian model for inconsistent protein sequence estimation.

Khenoussi W, Vanhoutrève R, Poch O, Thompson JD.

Bioinformatics. 2014 Sep 1;30(17):2432-9. doi: 10.1093/bioinformatics/btu329. Epub 2014 May 13.

PMID:
24825613
24.

A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i).

Bermejo-Das-Neves C, Nguyen HN, Poch O, Thompson JD.

BMC Bioinformatics. 2014 Apr 17;15:111. doi: 10.1186/1471-2105-15-111.

25.

Lrit3 deficient mouse (nob6): a novel model of complete congenital stationary night blindness (cCSNB).

Neuillé M, El Shamieh S, Orhan E, Michiels C, Antonio A, Lancelot ME, Condroyer C, Bujakowska K, Poch O, Sahel JA, Audo I, Zeitz C.

PLoS One. 2014 Mar 5;9(3):e90342. doi: 10.1371/journal.pone.0090342. eCollection 2014.

26.

Released selective pressure on a structural domain gives new insights on the functional relaxation of mitochondrial aspartyl-tRNA synthetase.

Schwenzer H, Scheper GC, Zorn N, Moulinier L, Gaudry A, Leize E, Martin F, Florentz C, Poch O, Sissler M.

Biochimie. 2014 May;100:18-26. doi: 10.1016/j.biochi.2013.09.027. Epub 2013 Oct 8.

PMID:
24120687
27.

Exome sequencing of Bardet-Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18).

Scheidecker S, Etard C, Pierce NW, Geoffroy V, Schaefer E, Muller J, Chennen K, Flori E, Pelletier V, Poch O, Marion V, Stoetzel C, Strähle U, Nachury MV, Dollfus H.

J Med Genet. 2014 Feb;51(2):132-6. doi: 10.1136/jmedgenet-2013-101785. Epub 2013 Sep 11.

28.

The familial dementia gene revisited: a missense mutation revealed by whole-exome sequencing identifies ITM2B as a candidate gene underlying a novel autosomal dominant retinal dystrophy in a large family.

Audo I, Bujakowska K, Orhan E, El Shamieh S, Sennlaub F, Guillonneau X, Antonio A, Michiels C, Lancelot ME, Letexier M, Saraiva JP, Nguyen H, Luu TD, Léveillard T, Poch O, Dollfus H, Paques M, Goureau O, Mohand-Saïd S, Bhattacharya SS, Sahel JA, Zeitz C.

Hum Mol Genet. 2014 Jan 15;23(2):491-501. doi: 10.1093/hmg/ddt439. Epub 2013 Sep 10.

PMID:
24026677
29.

PARSEC: PAtteRn SEarch and Contextualization.

Allot A, Anno YN, Poidevin L, Ripp R, Poch O, Lecompte O.

Bioinformatics. 2013 Oct 15;29(20):2643-4. doi: 10.1093/bioinformatics/btt455. Epub 2013 Aug 7.

PMID:
23929031
30.

Detection and characterisation of mutations responsible for allele-specific protein thermostabilities at the Mn-superoxide dismutase gene in the deep-sea hydrothermal vent polychaete Alvinella pompejana.

Bruneaux M, Mary J, Verheye M, Lecompte O, Poch O, Jollivet D, Tanguy A.

J Mol Evol. 2013 May;76(5):295-310. doi: 10.1007/s00239-013-9559-y. Epub 2013 Apr 23.

PMID:
23608997
31.

Knowledge discovery in variant databases using inductive logic programming.

Nguyen H, Luu TD, Poch O, Thompson JD.

Bioinform Biol Insights. 2013 Mar 18;7:119-31. doi: 10.4137/BBI.S11184. Print 2013.

32.

Seven new loci associated with age-related macular degeneration.

Fritsche LG, Chen W, Schu M, Yaspan BL, Yu Y, Thorleifsson G, Zack DJ, Arakawa S, Cipriani V, Ripke S, Igo RP Jr, Buitendijk GH, Sim X, Weeks DE, Guymer RH, Merriam JE, Francis PJ, Hannum G, Agarwal A, Armbrecht AM, Audo I, Aung T, Barile GR, Benchaboune M, Bird AC, Bishop PN, Branham KE, Brooks M, Brucker AJ, Cade WH, Cain MS, Campochiaro PA, Chan CC, Cheng CY, Chew EY, Chin KA, Chowers I, Clayton DG, Cojocaru R, Conley YP, Cornes BK, Daly MJ, Dhillon B, Edwards AO, Evangelou E, Fagerness J, Ferreyra HA, Friedman JS, Geirsdottir A, George RJ, Gieger C, Gupta N, Hagstrom SA, Harding SP, Haritoglou C, Heckenlively JR, Holz FG, Hughes G, Ioannidis JP, Ishibashi T, Joseph P, Jun G, Kamatani Y, Katsanis N, N Keilhauer C, Khan JC, Kim IK, Kiyohara Y, Klein BE, Klein R, Kovach JL, Kozak I, Lee CJ, Lee KE, Lichtner P, Lotery AJ, Meitinger T, Mitchell P, Mohand-Saïd S, Moore AT, Morgan DJ, Morrison MA, Myers CE, Naj AC, Nakamura Y, Okada Y, Orlin A, Ortube MC, Othman MI, Pappas C, Park KH, Pauer GJ, Peachey NS, Poch O, Priya RR, Reynolds R, Richardson AJ, Ripp R, Rudolph G, Ryu E, Sahel JA, Schaumberg DA, Scholl HP, Schwartz SG, Scott WK, Shahid H, Sigurdsson H, Silvestri G, Sivakumaran TA, Smith RT, Sobrin L, Souied EH, Stambolian DE, Stefansson H, Sturgill-Short GM, Takahashi A, Tosakulwong N, Truitt BJ, Tsironi EE, Uitterlinden AG, van Duijn CM, Vijaya L, Vingerling JR, Vithana EN, Webster AR, Wichmann HE, Winkler TW, Wong TY, Wright AF, Zelenika D, Zhang M, Zhao L, Zhang K, Klein ML, Hageman GS, Lathrop GM, Stefansson K, Allikmets R, Baird PN, Gorin MB, Wang JJ, Klaver CC, Seddon JM, Pericak-Vance MA, Iyengar SK, Yates JR, Swaroop A, Weber BH, Kubo M, Deangelis MM, Léveillard T, Thorsteinsdottir U, Haines JL, Farrer LA, Heid IM, Abecasis GR; AMD Gene Consortium.

Nat Genet. 2013 Apr;45(4):433-9, 439e1-2. doi: 10.1038/ng.2578. Epub 2013 Mar 3.

33.

Tubulin tyrosine ligase like 12, a TTLL family member with SET- and TTL-like domains and roles in histone and tubulin modifications and mitosis.

Brants J, Semenchenko K, Wasylyk C, Robert A, Carles A, Zambrano A, Pradeau-Aubreton K, Birck C, Schalken JA, Poch O, de Mey J, Wasylyk B.

PLoS One. 2012;7(12):e51258. doi: 10.1371/journal.pone.0051258. Epub 2012 Dec 12.

34.

Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness.

Zeitz C, Jacobson SG, Hamel CP, Bujakowska K, Neuillé M, Orhan E, Zanlonghi X, Lancelot ME, Michiels C, Schwartz SB, Bocquet B; Congenital Stationary Night Blindness Consortium, Antonio A, Audier C, Letexier M, Saraiva JP, Luu TD, Sennlaub F, Nguyen H, Poch O, Dollfus H, Lecompte O, Kohl S, Sahel JA, Bhattacharya SS, Audo I.

Am J Hum Genet. 2013 Jan 10;92(1):67-75. doi: 10.1016/j.ajhg.2012.10.023. Epub 2012 Dec 13.

35.

Functional insights into the core-TFIIH from a comparative survey.

Bedez F, Linard B, Brochet X, Ripp R, Thompson JD, Moras D, Lecompte O, Poch O.

Genomics. 2013 Mar;101(3):178-86. doi: 10.1016/j.ygeno.2012.11.003. Epub 2012 Nov 10.

36.

Increased frequency of single base substitutions in a population of transcripts expressed in cancer cells.

Bianchetti L, Kieffer D, Féderkeil R, Poch O.

BMC Cancer. 2012 Nov 8;12:509. doi: 10.1186/1471-2407-12-509.

37.

Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis.

Devignes MD, Benabderrahmane S, Smaïl-Tabbone M, Napoli A, Poch O.

Int J Comput Biol Drug Des. 2012;5(3-4):245-60. doi: 10.1504/IJCBDD.2012.049207. Epub 2012 Sep 24.

PMID:
23013652
38.

The chordate proteome history database.

Levasseur A, Paganini J, Dainat J, Thompson JD, Poch O, Pontarotti P, Gouret P.

Evol Bioinform Online. 2012;8:437-47. doi: 10.4137/EBO.S9186. Epub 2012 Aug 1.

39.

Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism.

De Craene JO, Ripp R, Lecompte O, Thompson JD, Poch O, Friant S.

BMC Genomics. 2012 Jul 2;13:297. doi: 10.1186/1471-2164-13-297.

40.

RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts.

Anamika K, Gyenis À, Poidevin L, Poch O, Tora L.

PLoS One. 2012;7(6):e38769. doi: 10.1371/journal.pone.0038769. Epub 2012 Jun 11.

41.

The PROCESS experiment: amino and carboxylic acids under Mars-like surface UV radiation conditions in low-earth orbit.

Noblet A, Stalport F, Guan YY, Poch O, Coll P, Szopa C, Cloix M, Macari F, Raulin F, Chaput D, Cottin H.

Astrobiology. 2012 May;12(5):436-44. doi: 10.1089/ast.2011.0756.

PMID:
22680690
42.

The PROCESS experiment: an astrochemistry laboratory for solid and gaseous organic samples in low-earth orbit.

Cottin H, Guan YY, Noblet A, Poch O, Saiagh K, Cloix M, Macari F, Jérome M, Coll P, Raulin F, Stalport F, Szopa C, Bertrand M, Chabin A, Westall F, Chaput D, Demets R, Brack A.

Astrobiology. 2012 May;12(5):412-25. doi: 10.1089/ast.2011.0773.

PMID:
22680688
43.

KD4v: Comprehensible Knowledge Discovery System for Missense Variant.

Luu TD, Rusu A, Walter V, Linard B, Poidevin L, Ripp R, Moulinier L, Muller J, Raffelsberger W, Wicker N, Lecompte O, Thompson JD, Poch O, Nguyen H.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W71-5. doi: 10.1093/nar/gks474. Epub 2012 May 27.

44.

MSV3d: database of human MisSense Variants mapped to 3D protein structure.

Luu TD, Rusu AM, Walter V, Ripp R, Moulinier L, Muller J, Toursel T, Thompson JD, Poch O, Nguyen H.

Database (Oxford). 2012 Apr 3;2012:bas018. doi: 10.1093/database/bas018. Print 2012.

45.

Prebiotic-like chemistry on Titan.

Raulin F, Brassé C, Poch O, Coll P.

Chem Soc Rev. 2012 Aug 21;41(16):5380-93. doi: 10.1039/c2cs35014a. Epub 2012 Apr 5. Review.

PMID:
22481630
46.

Proteome adaptation to high temperatures in the ectothermic hydrothermal vent Pompeii worm.

Jollivet D, Mary J, Gagnière N, Tanguy A, Fontanillas E, Boutet I, Hourdez S, Segurens B, Weissenbach J, Poch O, Lecompte O.

PLoS One. 2012;7(2):e31150. doi: 10.1371/journal.pone.0031150. Epub 2012 Feb 10.

47.

Nxnl2 splicing results in dual functions in neuronal cell survival and maintenance of cell integrity.

Jaillard C, Mouret A, Niepon ML, Clérin E, Yang Y, Lee-Rivera I, Aït-Ali N, Millet-Puel G, Cronin T, Sedmak T, Raffelsberger W, Kinzel B, Trembleau A, Poch O, Bennett J, Wolfrum U, Lledo PM, Sahel JA, Léveillard T.

Hum Mol Genet. 2012 May 15;21(10):2298-311. doi: 10.1093/hmg/dds050. Epub 2012 Feb 15.

48.

Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness.

Audo I, Bujakowska K, Orhan E, Poloschek CM, Defoort-Dhellemmes S, Drumare I, Kohl S, Luu TD, Lecompte O, Zrenner E, Lancelot ME, Antonio A, Germain A, Michiels C, Audier C, Letexier M, Saraiva JP, Leroy BP, Munier FL, Mohand-Saïd S, Lorenz B, Friedburg C, Preising M, Kellner U, Renner AB, Moskova-Doumanova V, Berger W, Wissinger B, Hamel CP, Schorderet DF, De Baere E, Sharon D, Banin E, Jacobson SG, Bonneau D, Zanlonghi X, Le Meur G, Casteels I, Koenekoop R, Long VW, Meire F, Prescott K, de Ravel T, Simmons I, Nguyen H, Dollfus H, Poch O, Léveillard T, Nguyen-Ba-Charvet K, Sahel JA, Bhattacharya SS, Zeitz C.

Am J Hum Genet. 2012 Feb 10;90(2):321-30. doi: 10.1016/j.ajhg.2011.12.007. Erratum in: Am J Hum Genet. 2012 Jul 13;91(1):209.

49.

EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data.

Linard B, Nguyen NH, Prosdocimi F, Poch O, Thompson JD.

Evol Bioinform Online. 2012;8:61-77. doi: 10.4137/EBO.S8814. Epub 2011 Dec 21.

50.

Controversies in modern evolutionary biology: the imperative for error detection and quality control.

Prosdocimi F, Linard B, Pontarotti P, Poch O, Thompson JD.

BMC Genomics. 2012 Jan 4;13:5. doi: 10.1186/1471-2164-13-5.

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