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Items: 1 to 50 of 109

1.

Propionibacterium ruminifibrarum sp. nov., isolated from cow rumen fibrous content.

Vaidya JD, Hornung BVH, Smidt H, Edwards JE, Plugge CM.

Int J Syst Evol Microbiol. 2019 Aug;69(8):2584-2590. doi: 10.1099/ijsem.0.003544. Epub 2019 Jun 24.

PMID:
31232679
2.

Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples.

Palakawong Na Ayudthaya S, van der Oost H, van der Oost J, van Vliet DM, Plugge CM.

Curr Microbiol. 2019 Apr;76(4):425-434. doi: 10.1007/s00284-019-01630-x. Epub 2019 Feb 12.

3.

Isolation and characterization of Sphingomonadaceae from fouled membranes.

de Vries HJ, Beyer F, Jarzembowska M, Lipińska J, van den Brink P, Zwijnenburg A, Timmers PHA, Stams AJM, Plugge CM.

NPJ Biofilms Microbiomes. 2019 Jan 25;5:6. doi: 10.1038/s41522-018-0074-1. eCollection 2019.

4.

Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments.

Timmers PHA, Vavourakis CD, Kleerebezem R, Damsté JSS, Muyzer G, Stams AJM, Sorokin DY, Plugge CM.

Front Microbiol. 2018 Dec 10;9:3039. doi: 10.3389/fmicb.2018.03039. eCollection 2018.

5.

The potential of osmolytes and their precursors to alleviate osmotic stress of anaerobic granular sludge.

Sudmalis D, Millah SK, Gagliano MC, Butré CI, Plugge CM, Rijnaarts HHM, Zeeman G, Temmink H.

Water Res. 2018 Dec 15;147:142-151. doi: 10.1016/j.watres.2018.09.059. Epub 2018 Oct 2.

6.

EPS Glycoconjugate Profiles Shift as Adaptive Response in Anaerobic Microbial Granulation at High Salinity.

Gagliano MC, Neu TR, Kuhlicke U, Sudmalis D, Temmink H, Plugge CM.

Front Microbiol. 2018 Jul 2;9:1423. doi: 10.3389/fmicb.2018.01423. eCollection 2018.

7.

Comparative proteome analysis of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens.

Sedano-Núñez VT, Boeren S, Stams AJM, Plugge CM.

Environ Microbiol. 2018 May;20(5):1842-1856. doi: 10.1111/1462-2920.14119. Epub 2018 Apr 23.

8.

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows.

Vaidya JD, van den Bogert B, Edwards JE, Boekhorst J, van Gastelen S, Saccenti E, Plugge CM, Smidt H.

Front Microbiol. 2018 Jan 31;9:92. doi: 10.3389/fmicb.2018.00092. eCollection 2018.

9.

Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows.

Palakawong Na Ayudthaya S, van de Weijer AHP, van Gelder AH, Stams AJM, de Vos WM, Plugge CM.

Biotechnol Biofuels. 2018 Jan 25;11:13. doi: 10.1186/s13068-018-1012-4. eCollection 2018.

10.

Controlling Ethanol Use in Chain Elongation by CO2 Loading Rate.

Roghair M, Hoogstad T, Strik DPBTB, Plugge CM, Timmers PHA, Weusthuis RA, Bruins ME, Buisman CJN.

Environ Sci Technol. 2018 Feb 6;52(3):1496-1505. doi: 10.1021/acs.est.7b04904. Epub 2018 Jan 24.

11.

From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality.

Kreft JU, Plugge CM, Prats C, Leveau JHJ, Zhang W, Hellweger FL.

Front Microbiol. 2017 Nov 27;8:2299. doi: 10.3389/fmicb.2017.02299. eCollection 2017. Review.

12.

Fast anaerobic sludge granulation at elevated salinity.

Sudmalis D, Gagliano MC, Pei R, Grolle K, Plugge CM, Rijnaarts HHM, Zeeman G, Temmink H.

Water Res. 2018 Jan 1;128:293-303. doi: 10.1016/j.watres.2017.10.038. Epub 2017 Oct 21.

13.

Biogas.

Plugge CM.

Microb Biotechnol. 2017 Sep;10(5):1128-1130. doi: 10.1111/1751-7915.12854. Epub 2017 Sep 14.

14.

Draft Genome Sequence of Actinomycessucciniciruminis Strain Am4T, Isolated from Cow Rumen Fluid.

Palakawong Na Ayudthaya S, Hornung B, Ravikumar Varadarajan A, Plugge W, Plugge CM.

Genome Announc. 2017 Jul 20;5(29). pii: e01587-16. doi: 10.1128/genomeA.01587-16.

15.

Evaluation and optimization of PCR primers for selective and quantitative detection of marine ANME subclusters involved in sulfate-dependent anaerobic methane oxidation.

Timmers PHA, Widjaja-Greefkes HCA, Plugge CM, Stams AJM.

Appl Microbiol Biotechnol. 2017 Jul;101(14):5847-5859. doi: 10.1007/s00253-017-8338-x. Epub 2017 Jun 15.

16.

Draft Genome Sequence of Sphingomonas sp. Strain Sph1(2015), Isolated from a Fouled Membrane Filter Used To Produce Drinking Water.

de Vries HJ, Marshall IPG, Schreiber L, Plugge CM.

Genome Announc. 2017 Jun 15;5(24). pii: e00517-17. doi: 10.1128/genomeA.00517-17.

17.

Biofilm formation and granule properties in anaerobic digestion at high salinity.

Gagliano MC, Ismail SB, Stams AJM, Plugge CM, Temmink H, Van Lier JB.

Water Res. 2017 Sep 15;121:61-71. doi: 10.1016/j.watres.2017.05.016. Epub 2017 May 10.

18.

Read-across of ready biodegradability based on the substrate specificity of N-alkyl polypropylene polyamine-degrading microorganisms.

Geerts R, van Ginkel CG, Plugge CM.

SAR QSAR Environ Res. 2017 Apr;28(4):311-323. doi: 10.1080/1062936X.2017.1316517. Epub 2017 May 8.

PMID:
28480742
19.

Inhibitory Effect of Coumarin on Syntrophic Fatty Acid-Oxidizing and Methanogenic Cultures and Biogas Reactor Microbiomes.

Popp D, Plugge CM, Kleinsteuber S, Harms H, Sträuber H.

Appl Environ Microbiol. 2017 Jun 16;83(13). pii: e00438-17. doi: 10.1128/AEM.00438-17. Print 2017 Jul 1.

20.

Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen.

van Lingen HJ, Edwards JE, Vaidya JD, van Gastelen S, Saccenti E, van den Bogert B, Bannink A, Smidt H, Plugge CM, Dijkstra J.

Front Microbiol. 2017 Mar 17;8:425. doi: 10.3389/fmicb.2017.00425. eCollection 2017.

21.

Draft Genome Sequence of Streptococcus caviae Strain Cavy grass 6T, Isolated from Domesticated Guinea Pig Fecal Samples.

Palakawong Na Ayudthaya S, Marshall IP, Schreiber L, Plugge CM.

Genome Announc. 2017 Mar 30;5(13). pii: e00080-17. doi: 10.1128/genomeA.00080-17.

22.

Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria.

Paulo AMS, Aydin R, Dimitrov MR, Vreeling H, Cavaleiro AJ, García-Encina PA, Stams AJM, Plugge CM.

Appl Microbiol Biotechnol. 2017 Jun;101(12):5163-5173. doi: 10.1007/s00253-017-8212-x. Epub 2017 Mar 15.

23.

Draft Genome Sequence of Actinomyces glycerinitolerans Strain G10T, Isolated from Sheep Rumen Fluid.

Palakawong Na Ayudthaya S, Strepis N, Pristaš P, Plugge CM.

Genome Announc. 2017 Feb 16;5(7). pii: e01589-16. doi: 10.1128/genomeA.01589-16.

24.

Reverse Methanogenesis and Respiration in Methanotrophic Archaea.

Timmers PH, Welte CU, Koehorst JJ, Plugge CM, Jetten MS, Stams AJ.

Archaea. 2017 Jan 5;2017:1654237. doi: 10.1155/2017/1654237. eCollection 2017. Review.

25.

Streptococcus caviae sp. nov., isolated from guinea pig faecal samples.

Palakawong Na Ayudthaya S, Hilderink LJ, Oost JV, Vos WM, Plugge CM.

Int J Syst Evol Microbiol. 2017 May;67(5):1551-1556. doi: 10.1099/ijsem.0.001758. Epub 2017 May 25.

PMID:
28008820
26.

Thiosulfate Conversion to Sulfide by a Haloalkaliphilic Microbial Community in a Bioreactor Fed with H2 Gas.

Sousa JA, Bijmans MF, Stams AJ, Plugge CM.

Environ Sci Technol. 2017 Jan 17;51(2):914-923. doi: 10.1021/acs.est.6b04497. Epub 2017 Jan 6.

PMID:
27997142
27.

Correction: Thermodynamic Driving Force of Hydrogen on Rumen Microbial Metabolism: A Theoretical Investigation.

van Lingen HJ, Plugge CM, Fadel JG, Kebreab E, Bannink A, Dijkstra J.

PLoS One. 2016 Dec 9;11(12):e0168052. doi: 10.1371/journal.pone.0168052. eCollection 2016.

28.

Effect of humic acid on anaerobic digestion of cellulose and xylan in completely stirred tank reactors: inhibitory effect, mitigation of the inhibition and the dynamics of the microbial communities.

Azman S, Khadem AF, Plugge CM, Stams AJ, Bec S, Zeeman G.

Appl Microbiol Biotechnol. 2017 Jan;101(2):889-901. doi: 10.1007/s00253-016-8010-x. Epub 2016 Nov 29.

29.

Piezo-tolerant natural gas-producing microbes under accumulating pCO2.

Lindeboom REF, Shin SG, Weijma J, van Lier JB, Plugge CM.

Biotechnol Biofuels. 2016 Nov 4;9:236. doi: 10.1186/s13068-016-0634-7. eCollection 2016.

30.

Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T.

Nat Microbiol. 2016 Oct 17;1(11):16219. doi: 10.1038/nmicrobiol.2016.219. No abstract available.

PMID:
27748770
31.

Thermodynamic Driving Force of Hydrogen on Rumen Microbial Metabolism: A Theoretical Investigation.

van Lingen HJ, Plugge CM, Fadel JG, Kebreab E, Bannink A, Dijkstra J.

PLoS One. 2016 Oct 26;11(10):e0161362. doi: 10.1371/journal.pone.0161362. eCollection 2016. Erratum in: PLoS One. 2016 Dec 9;11(12 ):e0168052.

32.

Comparative genomics and physiology of the butyrate-producing bacterium Intestinimonas butyriciproducens.

Bui TP, Shetty SA, Lagkouvardos I, Ritari J, Chamlagain B, Douillard FP, Paulin L, Piironen V, Clavel T, Plugge CM, de Vos WM.

Environ Microbiol Rep. 2016 Dec;8(6):1024-1037. doi: 10.1111/1758-2229.12483. Epub 2016 Nov 9.

PMID:
27717172
33.

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martínez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T.

Nat Microbiol. 2016 Aug 8;1(10):16131. doi: 10.1038/nmicrobiol.2016.131. Erratum in: Nat Microbiol. 2016 Oct 17;1(11):16219.

PMID:
27670113
34.

Comparative Analysis of Carbon Monoxide Tolerance among Thermoanaerobacter Species.

Alves JI, Alves MM, Plugge CM, Stams AJ, Sousa DZ.

Front Microbiol. 2016 Aug 29;7:1330. doi: 10.3389/fmicb.2016.01330. eCollection 2016.

35.

Actinomyces succiniciruminis sp. nov. and Actinomyces glycerinitolerans sp. nov., two novel organic acid-producing bacteria isolated from rumen.

Palakawong N A S, Pristaš P, Hrehová L, Javorský P, Stams AJ, Plugge CM.

Syst Appl Microbiol. 2016 Oct;39(7):445-452. doi: 10.1016/j.syapm.2016.08.001. Epub 2016 Aug 24.

36.

Advancing microbial sciences by individual-based modelling.

Hellweger FL, Clegg RJ, Clark JR, Plugge CM, Kreft JU.

Nat Rev Microbiol. 2016 Jul;14(7):461-71. doi: 10.1038/nrmicro.2016.62. Epub 2016 Jun 6. Review.

PMID:
27265769
37.

Chain Elongation with Reactor Microbiomes: Open-Culture Biotechnology To Produce Biochemicals.

Angenent LT, Richter H, Buckel W, Spirito CM, Steinbusch KJ, Plugge CM, Strik DP, Grootscholten TI, Buisman CJ, Hamelers HV.

Environ Sci Technol. 2016 Mar 15;50(6):2796-810. doi: 10.1021/acs.est.5b04847. Epub 2016 Feb 25. Review.

PMID:
26854969
38.

Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source.

Timmers PH, Suarez-Zuluaga DA, van Rossem M, Diender M, Stams AJ, Plugge CM.

ISME J. 2016 Jun;10(6):1400-12. doi: 10.1038/ismej.2015.213. Epub 2015 Dec 4.

39.

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal.

Bui TP, Ritari J, Boeren S, de Waard P, Plugge CM, de Vos WM.

Nat Commun. 2015 Dec 1;6:10062. doi: 10.1038/ncomms10062.

40.

Lachnotalea glycerini gen. nov., sp. nov., an anaerobe isolated from a nanofiltration unit treating anoxic groundwater.

Jarzembowska M, Sousa DZ, Beyer F, Zwijnenburg A, Plugge CM, Stams AJM.

Int J Syst Evol Microbiol. 2016 Feb;66(2):774-779. doi: 10.1099/ijsem.0.000791. Epub 2015 Nov 24.

PMID:
26612136
41.

Growth and activity of ANME clades with different sulfate and sulfide concentrations in the presence of methane.

Timmers PH, Widjaja-Greefkes HC, Ramiro-Garcia J, Plugge CM, Stams AJ.

Front Microbiol. 2015 Sep 22;6:988. doi: 10.3389/fmicb.2015.00988. eCollection 2015.

42.

Thiosulphate conversion in a methane and acetate fed membrane bioreactor.

Suarez-Zuluaga DA, Timmers PH, Plugge CM, Stams AJ, Buisman CJ, Weijma J.

Environ Sci Pollut Res Int. 2016 Feb;23(3):2467-78. doi: 10.1007/s11356-015-5344-3. Epub 2015 Oct 1.

43.

Ecology and application of haloalkaliphilic anaerobic microbial communities.

Sousa JA, Sorokin DY, Bijmans MF, Plugge CM, Stams AJ.

Appl Microbiol Biotechnol. 2015 Nov;99(22):9331-6. doi: 10.1007/s00253-015-6937-y. Epub 2015 Sep 10. Review.

44.

Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?

Ozuolmez D, Na H, Lever MA, Kjeldsen KU, Jørgensen BB, Plugge CM.

Front Microbiol. 2015 May 27;6:492. doi: 10.3389/fmicb.2015.00492. eCollection 2015.

45.

Influence of phenylacetic acid pulses on anaerobic digestion performance and archaeal community structure in WWTP sewage sludge digesters.

Cabrol L, Urra J, Rosenkranz F, Kroff PA, Plugge CM, Lesty Y, Chamy R.

Water Sci Technol. 2015;71(12):1790-9. doi: 10.2166/wst.2015.165.

PMID:
26067498
46.

Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC.

Oosterkamp MJ, Boeren S, Atashgahi S, Plugge CM, Schaap PJ, Stams AJ.

FEMS Microbiol Lett. 2015 Jun;362(11). pii: fnv080. doi: 10.1093/femsle/fnv080. Epub 2015 May 14.

PMID:
25977262
47.

Accurate assessment of the biodegradation of cationic surfactants in activated sludge reactors (OECD TG 303A).

Geerts R, van Ginkel CG, Plugge CM.

Ecotoxicol Environ Saf. 2015 Aug;118:83-89. doi: 10.1016/j.ecoenv.2015.04.013. Epub 2015 Apr 24.

PMID:
25913361
48.

Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor.

Mehboob F, Oosterkamp MJ, Koehorst JJ, Farrakh S, Veuskens T, Plugge CM, Boeren S, de Vos WM, Schraa G, Stams AJ, Schaap PJ.

Environ Microbiol. 2016 Oct;18(10):3247-3257. doi: 10.1111/1462-2920.12880. Epub 2015 Jun 5.

PMID:
25900248
49.

Mitigation of Humic Acid Inhibition in Anaerobic Digestion of Cellulose by Addition of Various Salts.

Azman S, Khadem AF, Zeeman G, van Lier JB, Plugge CM.

Bioengineering (Basel). 2015 Mar 25;2(2):54-65. doi: 10.3390/bioengineering2020054.

50.

Characterization of the bacterial community involved in the bioflocculation process of wastewater organic matter in high-loaded MBRs.

Faust L, Szendy M, Plugge CM, van den Brink PF, Temmink H, Rijnaarts HH.

Appl Microbiol Biotechnol. 2015 Jun;99(12):5327-37. doi: 10.1007/s00253-015-6402-y. Epub 2015 Jan 30.

PMID:
25634019

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