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Items: 14

1.

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.

Lake BB, Chen S, Hoshi M, Plongthongkum N, Salamon D, Knoten A, Vijayan A, Venkatesh R, Kim EH, Gao D, Gaut J, Zhang K, Jain S.

Nat Commun. 2019 Jun 27;10(1):2832. doi: 10.1038/s41467-019-10861-2.

2.

Large-Scale Targeted DNA Methylation Analysis Using Bisulfite Padlock Probes.

Diep D, Plongthongkum N, Zhang K.

Methods Mol Biol. 2018;1708:365-382. doi: 10.1007/978-1-4939-7481-8_19.

PMID:
29224154
3.

Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA.

Guo S, Diep D, Plongthongkum N, Fung HL, Zhang K, Zhang K.

Nat Genet. 2017 Apr;49(4):635-642. doi: 10.1038/ng.3805. Epub 2017 Mar 6.

4.

Advances in the profiling of DNA modifications: cytosine methylation and beyond.

Plongthongkum N, Diep DH, Zhang K.

Nat Rev Genet. 2014 Oct;15(10):647-61. doi: 10.1038/nrg3772. Epub 2014 Aug 27. Review.

PMID:
25159599
5.

Characterization of genome-methylome interactions in 22 nuclear pedigrees.

Plongthongkum N, van Eijk KR, de Jong S, Wang T, Sul JH, Boks MP, Kahn RS, Fung HL, Ophoff RA, Zhang K.

PLoS One. 2014 Jul 14;9(7):e99313. doi: 10.1371/journal.pone.0099313. eCollection 2014.

6.

Modelling Fanconi anemia pathogenesis and therapeutics using integration-free patient-derived iPSCs.

Liu GH, Suzuki K, Li M, Qu J, Montserrat N, Tarantino C, Gu Y, Yi F, Xu X, Zhang W, Ruiz S, Plongthongkum N, Zhang K, Masuda S, Nivet E, Tsunekawa Y, Soligalla RD, Goebl A, Aizawa E, Kim NY, Kim J, Dubova I, Li Y, Ren R, Benner C, Del Sol A, Bueren J, Trujillo JP, Surralles J, Cappelli E, Dufour C, Esteban CR, Belmonte JCI.

Nat Commun. 2014 Jul 7;5:4330. doi: 10.1038/ncomms5330.

7.

Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes.

Gu Y, Liu GH, Plongthongkum N, Benner C, Yi F, Qu J, Suzuki K, Yang J, Zhang W, Li M, Montserrat N, Crespo I, Del Sol A, Esteban CR, Zhang K, Izpisua Belmonte JC.

Protein Cell. 2014 Jan;5(1):59-68. doi: 10.1007/s13238-013-0016-x. Epub 2014 Jan 29.

8.

Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes.

Gu Y, Liu GH, Plongthongkum N, Benner C, Yi F, Qu J, Suzuki K, Yang J, Zhang W, Li M, Montserrat N, Crespo I, Del Sol A, Esteban CR, Zhang K, Belmonte JC.

Protein Cell. 2013 Aug 27. [Epub ahead of print]

PMID:
23982742
9.

Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells.

Ruiz S, Diep D, Gore A, Panopoulos AD, Montserrat N, Plongthongkum N, Kumar S, Fung HL, Giorgetti A, Bilic J, Batchelder EM, Zaehres H, Kan NG, Schöler HR, Mercola M, Zhang K, Izpisua Belmonte JC.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16196-201. doi: 10.1073/pnas.1202352109. Epub 2012 Sep 18.

10.

Library-free methylation sequencing with bisulfite padlock probes.

Diep D, Plongthongkum N, Gore A, Fung HL, Shoemaker R, Zhang K.

Nat Methods. 2012 Feb 5;9(3):270-2. doi: 10.1038/nmeth.1871.

11.

The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming.

Panopoulos AD, Yanes O, Ruiz S, Kida YS, Diep D, Tautenhahn R, Herrerías A, Batchelder EM, Plongthongkum N, Lutz M, Berggren WT, Zhang K, Evans RM, Siuzdak G, Izpisua Belmonte JC.

Cell Res. 2012 Jan;22(1):168-77. doi: 10.1038/cr.2011.177. Epub 2011 Nov 8.

12.

Targeted gene correction of laminopathy-associated LMNA mutations in patient-specific iPSCs.

Liu GH, Suzuki K, Qu J, Sancho-Martinez I, Yi F, Li M, Kumar S, Nivet E, Kim J, Soligalla RD, Dubova I, Goebl A, Plongthongkum N, Fung HL, Zhang K, Loring JF, Laurent LC, Izpisua Belmonte JC.

Cell Stem Cell. 2011 Jun 3;8(6):688-94. doi: 10.1016/j.stem.2011.04.019. Epub 2011 May 19.

13.

Ire1 regulated XBP1 mRNA splicing is essential for the unfolded protein response (UPR) in Drosophila melanogaster.

Plongthongkum N, Kullawong N, Panyim S, Tirasophon W.

Biochem Biophys Res Commun. 2007 Mar 16;354(3):789-94. Epub 2007 Jan 22.

PMID:
17266933
14.

Therapeutic inhibition of yellow head virus multiplication in infected shrimps by YHV-protease dsRNA.

Tirasophon W, Yodmuang S, Chinnirunvong W, Plongthongkum N, Panyim S.

Antiviral Res. 2007 May;74(2):150-5. Epub 2006 Dec 4.

PMID:
17166601

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