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Items: 43

1.

Toward Single-Organelle Lipidomics in Live Cells.

Lita A, Kuzmin AN, Pliss A, Baev A, Rzhevskii A, Gilbert MR, Larion M, Prasad PN.

Anal Chem. 2019 Sep 3;91(17):11380-11387. doi: 10.1021/acs.analchem.9b02663. Epub 2019 Aug 19.

PMID:
31381322
2.

Cellular transformations in near-infrared light-induced apoptosis in cancer cells revealed by label-free CARS imaging.

Levchenko SM, Kuzmin AN, Pliss A, Ohulchanskyy TY, Prasad PN, Qu J.

J Biophotonics. 2019 Jul 24:e201900179. doi: 10.1002/jbio.201900179. [Epub ahead of print]

PMID:
31339662
3.

A DTI study of leukoaraiosis and the differential diagnosis between leukoaraiosis and acute lacunar infarction.

Zhao DQ, Wang ZW, Cheng Y, Yuan Z, Rene F, Liu H, Pliss A, Luan P.

CNS Neurosci Ther. 2019 Sep;25(9):1064-1067. doi: 10.1111/cns.13191. Epub 2019 Jul 11. No abstract available.

4.

Cycles of protein condensation and discharge in nuclear organelles studied by fluorescence lifetime imaging.

Pliss A, Levchenko SM, Liu L, Peng X, Ohulchanskyy TY, Roy I, Kuzmin AN, Qu J, Prasad PN.

Nat Commun. 2019 Jan 28;10(1):455. doi: 10.1038/s41467-019-08354-3.

5.

Chromosome territories and the global regulation of the genome.

Fritz AJ, Sehgal N, Pliss A, Xu J, Berezney R.

Genes Chromosomes Cancer. 2019 Jul;58(7):407-426. doi: 10.1002/gcc.22732. Epub 2019 Mar 18. Review.

PMID:
30664301
6.

Near-Infrared Irradiation Affects Lipid Metabolism in Neuronal Cells, Inducing Lipid Droplets Formation.

Levchenko SM, Kuzmin AN, Ohulchanskyy TY, Pliss A, Qu J, Prasad PN.

ACS Chem Neurosci. 2019 Mar 20;10(3):1517-1523. doi: 10.1021/acschemneuro.8b00508. Epub 2018 Dec 13.

PMID:
30499655
7.

BCAbox Algorithm Expands Capabilities of Raman Microscope for Single Organelles Assessment.

Kuzmin AN, Pliss A, Rzhevskii A, Lita A, Larion M.

Biosensors (Basel). 2018 Nov 10;8(4). pii: E106. doi: 10.3390/bios8040106.

8.

Coherent Raman spectroscopic imaging to characterize microglia activation pathway.

Dessai CVP, Pliss A, Kuzmin AN, Furlani EP, Prasad PN.

J Biophotonics. 2019 May;12(5):e201800133. doi: 10.1002/jbio.201800133. Epub 2019 Jan 8.

PMID:
30141272
9.

Ramanomics: New Omics Disciplines Using Micro Raman Spectrometry with Biomolecular Component Analysis for Molecular Profiling of Biological Structures.

Kuzmin AN, Pliss A, Prasad PN.

Biosensors (Basel). 2017 Nov 15;7(4). pii: E52. doi: 10.3390/bios7040052. Review.

10.

Macromolecular Profiling of Organelles in Normal Diploid and Cancer Cells.

Levchenko SM, Kuzmin AN, Pliss A, Qu J, Prasad PN.

Anal Chem. 2017 Oct 17;89(20):10985-10990. doi: 10.1021/acs.analchem.7b02822. Epub 2017 Sep 26.

11.

Molecular profiling of single organelles for quantitative analysis of cellular heterogeneity.

Kuzmin AN, Levchenko SM, Pliss A, Qu J, Prasad PN.

Sci Rep. 2017 Jul 26;7(1):6512. doi: 10.1038/s41598-017-06936-z.

12.

Lipid quantification by Raman microspectroscopy as a potential biomarker in prostate cancer.

O'Malley J, Kumar R, Kuzmin AN, Pliss A, Yadav N, Balachandar S, Wang J, Attwood K, Prasad PN, Chandra D.

Cancer Lett. 2017 Jul 1;397:52-60. doi: 10.1016/j.canlet.2017.03.025. Epub 2017 Mar 23.

13.

Tunable Narrow Band Emissions from Dye-Sensitized Core/Shell/Shell Nanocrystals in the Second Near-Infrared Biological Window.

Shao W, Chen G, Kuzmin A, Kutscher HL, Pliss A, Ohulchanskyy TY, Prasad PN.

J Am Chem Soc. 2016 Dec 21;138(50):16192-16195. doi: 10.1021/jacs.6b08973. Epub 2016 Dec 9.

14.

Corrigendum: Resonance Raman Probes for Organelle-Specific Labeling in Live Cells.

Kuzmin AN, Pliss A, Lim CK, Heo J, Kim S, Rzhevskii A, Gu B, Yong KT, Wen S, Prasad PN.

Sci Rep. 2016 Sep 2;6:32469. doi: 10.1038/srep32469. No abstract available.

15.

In-situ second harmonic generation by cancer cell targeting ZnO nanocrystals to effect photodynamic action in subcellular space.

Gu B, Pliss A, Kuzmin AN, Baev A, Ohulchanskyy TY, Damasco JA, Yong KT, Wen S, Prasad PN.

Biomaterials. 2016 Oct;104:78-86. doi: 10.1016/j.biomaterials.2016.07.012. Epub 2016 Jul 12.

PMID:
27442221
16.

Resonance Raman Probes for Organelle-Specific Labeling in Live Cells.

Kuzmin AN, Pliss A, Lim CK, Heo J, Kim S, Rzhevskii A, Gu B, Yong KT, Wen S, Prasad PN.

Sci Rep. 2016 Jun 24;6:28483. doi: 10.1038/srep28483. Erratum in: Sci Rep. 2016 Sep 02;6:32469.

17.

Single Cell Assay for Molecular Diagnostics and Medicine: Monitoring Intracellular Concentrations of Macromolecules by Two-photon Fluorescence Lifetime Imaging.

Pliss A, Peng X, Liu L, Kuzmin A, Wang Y, Qu J, Li Y, Prasad PN.

Theranostics. 2015 May 15;5(9):919-30. doi: 10.7150/thno.11863. eCollection 2015.

18.

Fluctuations and synchrony of RNA synthesis in nucleoli.

Pliss A, Kuzmin AN, Kachynski AV, Baev A, Berezney R, Prasad PN.

Integr Biol (Camb). 2015 Jun;7(6):681-92. doi: 10.1039/c5ib00008d.

PMID:
25985251
19.

Organelle specific imaging in live cells and immuno-labeling using resonance Raman probe.

Li Y, Heo J, Lim CK, Pliss A, Kachynski AV, Kuzmin AN, Kim S, Prasad PN.

Biomaterials. 2015 Jun;53:25-31. doi: 10.1016/j.biomaterials.2015.02.056. Epub 2015 Mar 7.

PMID:
25890703
20.

Transformations of the macromolecular landscape at mitochondria during DNA-damage-induced apoptotic cell death.

Yadav N, Pliss A, Kuzmin A, Rapali P, Sun L, Prasad P, Chandra D.

Cell Death Dis. 2014 Oct 9;5:e1453. doi: 10.1038/cddis.2014.405.

21.

Changes in biomolecular profile in a single nucleolus during cell fixation.

Kuzmin AN, Pliss A, Prasad PN.

Anal Chem. 2014 Nov 4;86(21):10909-16. doi: 10.1021/ac503172b. Epub 2014 Oct 14.

PMID:
25268694
22.

Non-Random Patterns in the Distribution of NOR-Bearing Chromosome Territories in Human Fibroblasts: A Network Model of Interactions.

Pliss A, Fritz AJ, Stojkovic B, Ding H, Mukherjee L, Bhattacharya S, Xu J, Berezney R.

J Cell Physiol. 2015 Feb;230(2):427-39. doi: 10.1002/jcp.24726.

23.

Nucleolar molecular signature of pluripotent stem cells.

Pliss A, Kuzmin AN, Kachynski AV, Jiang H, Hu Z, Ren Y, Feng J, Prasad PN.

Anal Chem. 2013 Apr 2;85(7):3545-52. doi: 10.1021/ac303806j. Epub 2013 Mar 20.

PMID:
23458184
24.

Chromatin dynamics in living cells: identification of oscillatory motion.

Pliss A, Malyavantham KS, Bhattacharya S, Berezney R.

J Cell Physiol. 2013 Mar;228(3):609-16. doi: 10.1002/jcp.24169.

PMID:
22886456
25.

Fluorescence lifetime of fluorescent proteins as an intracellular environment probe sensing the cell cycle progression.

Pliss A, Zhao L, Ohulchanskyy TY, Qu J, Prasad PN.

ACS Chem Biol. 2012 Aug 17;7(8):1385-92. doi: 10.1021/cb300065w. Epub 2012 May 24.

PMID:
22594453
26.

Nonlinear optical imaging and Raman microspectrometry of the cell nucleus throughout the cell cycle.

Pliss A, Kuzmin AN, Kachynski AV, Prasad PN.

Biophys J. 2010 Nov 17;99(10):3483-91. doi: 10.1016/j.bpj.2010.06.069.

27.

Biophotonic probing of macromolecular transformations during apoptosis.

Pliss A, Kuzmin AN, Kachynski AV, Prasad PN.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12771-6. doi: 10.1073/pnas.1006374107. Epub 2010 Jul 6.

28.

Chromatin dynamics is correlated with replication timing.

Pliss A, Malyavantham K, Bhattacharya S, Zeitz M, Berezney R.

Chromosoma. 2009 Aug;118(4):459-70. doi: 10.1007/s00412-009-0208-6. Epub 2009 Mar 19.

29.

Ladder-like amplification of the type I interferon gene cluster in the human osteosarcoma cell line MG63.

Marella NV, Zeitz MJ, Malyavantham KS, Pliss A, Matsui S, Goetze S, Bode J, Raska I, Berezney R.

Chromosome Res. 2008;16(8):1177-92. doi: 10.1007/s10577-008-1267-x. Epub 2008 Nov 15.

30.

Comparison of intensity based similarity measures for matching genomic structures in microscopic images of living cells.

Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:3057-61.

PMID:
17946542
31.

Automated matching of genomic structures in microscopic images of living cells using an information theoretic approach.

Bhattacharya S, Acharya R, Pliss A, Malyavantham KS, Berezney R.

Conf Proc IEEE Eng Med Biol Soc. 2005;6:6425-8.

PMID:
17281739
32.

Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus.

Berezney R, Malyavantham KS, Pliss A, Bhattacharya S, Acharya R.

Adv Enzyme Regul. 2005;45:17-26. Epub 2005 Sep 1. No abstract available.

PMID:
16139341
33.

Spatio-temporal dynamics at rDNA foci: global switching between DNA replication and transcription.

Pliss A, Koberna K, Vecerová J, Malínský J, Masata M, Fialová M, Raska I, Berezney R.

J Cell Biochem. 2005 Feb 15;94(3):554-65.

PMID:
15543556
34.

Electron microscopy of DNA replication in 3-D: evidence for similar-sized replication foci throughout S-phase.

Koberna K, Ligasová A, Malínský J, Pliss A, Siegel AJ, Cvacková Z, Fidlerová H, Masata M, Fialová M, Raska I, Berezney R.

J Cell Biochem. 2005 Jan 1;94(1):126-38.

PMID:
15523671
35.

Ribosomal genes in focus: new transcripts label the dense fibrillar components and form clusters indicative of "Christmas trees" in situ.

Koberna K, Malínský J, Pliss A, Masata M, Vecerova J, Fialová M, Bednár J, Raska I.

J Cell Biol. 2002 May 27;157(5):743-8. Epub 2002 May 28. Erratum in: J Cell Biol 2002 Jul 22;158(2):369.

36.

CENP-C binds the alpha-satellite DNA in vivo at specific centromere domains.

Politi V, Perini G, Trazzi S, Pliss A, Raska I, Earnshaw WC, Della Valle G.

J Cell Sci. 2002 Jun 1;115(Pt 11):2317-27.

37.

An ATP-dependent step is required for the translocation of microinjected precursor mRNA into nuclear speckles.

Kopský V, Vecerová J, Melcák I, Pliss A, Stulík J, Koberna K, Tomásková L, Raska I.

Folia Biol (Praha). 2002;48(2):69-72.

PMID:
12002677
38.
39.

Non-isotopic mapping of ribosomal RNA synthesis and processing in the nucleolus.

Stanek D, Koberna K, Pliss A, Malínský J, Masata M, Vecerová J, Risueño MC, Raska I.

Chromosoma. 2001 Dec;110(7):460-70. Epub 2001 Nov 9.

PMID:
11862453
41.

Nuclear organization studied with the help of a hypotonic shift: its use permits hydrophilic molecules to enter into living cells.

Koberna K, Stanek D, Malínský J, Eltsov M, Pliss A, Ctrnáctá V, Cermanová S, Raska I.

Chromosoma. 1999 Sep;108(5):325-35.

PMID:
10525969
42.

Processing of free cells for electron microscopy using a fibrin clot.

Raska I, Pliss A, Mandys V, Risueno MC, Lojda Z.

Acta Histochem. 1998 Jul;100(3):309-13.

PMID:
9717568
43.

Non-isotopic detection of nucleolar transcription in pre-implantation mouse embryos.

Koberna K, Landa V, Kanka J, Pliss A, Eltsov M, Stanĕk D, Raska I.

Reprod Nutr Dev. 1998 Jan-Feb;38(1):117-26.

PMID:
9606754

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