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Items: 48

1.

MAVIS: merging, annotation, validation, and illustration of structural variants.

Reisle C, Mungall KL, Choo C, Paulino D, Bleile DW, Muhammadzadeh A, Mungall AJ, Moore RA, Shlafman I, Coope R, Pleasance S, Ma Y, Jones SJM.

Bioinformatics. 2019 Feb 1;35(3):515-517. doi: 10.1093/bioinformatics/bty621.

PMID:
30016509
2.

Aspirin or Rivaroxaban for VTE Prophylaxis after Hip or Knee Arthroplasty.

Anderson DR, Dunbar M, Murnaghan J, Kahn SR, Gross P, Forsythe M, Pelet S, Fisher W, Belzile E, Dolan S, Crowther M, Bohm E, MacDonald SJ, Gofton W, Kim P, Zukor D, Pleasance S, Andreou P, Doucette S, Theriault C, Abianui A, Carrier M, Kovacs MJ, Rodger MA, Coyle D, Wells PS, Vendittoli PA.

N Engl J Med. 2018 Feb 22;378(8):699-707. doi: 10.1056/NEJMoa1712746.

3.

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA.

Hammond SA, Warren RL, Vandervalk BP, Kucuk E, Khan H, Gibb EA, Pandoh P, Kirk H, Zhao Y, Jones M, Mungall AJ, Coope R, Pleasance S, Moore RA, Holt RA, Round JM, Ohora S, Walle BV, Veldhoen N, Helbing CC, Birol I.

Nat Commun. 2017 Nov 10;8(1):1433. doi: 10.1038/s41467-017-01316-7.

4.

Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease.

Hasan NA, Warren RL, Epperson LE, Malecha A, Alexander DC, Turenne CY, MacMillan D, Birol I, Pleasance S, Coope R, Jones SJM, Romney MG, Ng M, Chan T, Rodrigues M, Tang P, Gardy JL, Strong M.

Genome Announc. 2017 Sep 14;5(37). pii: e00963-17. doi: 10.1128/genomeA.00963-17.

5.

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

Coombe L, Warren RL, Jackman SD, Yang C, Vandervalk BP, Moore RA, Pleasance S, Coope RJ, Bohlmann J, Holt RA, Jones SJ, Birol I.

PLoS One. 2016 Sep 15;11(9):e0163059. doi: 10.1371/journal.pone.0163059. eCollection 2016.

6.

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.

Jackman SD, Warren RL, Gibb EA, Vandervalk BP, Mohamadi H, Chu J, Raymond A, Pleasance S, Coope R, Wildung MR, Ritland CE, Bousquet J, Jones SJ, Bohlmann J, Birol I.

Genome Biol Evol. 2015 Dec 8;8(1):29-41. doi: 10.1093/gbe/evv244.

7.

Co-occurrence of anaerobic bacteria in colorectal carcinomas.

Warren RL, Freeman DJ, Pleasance S, Watson P, Moore RA, Cochrane K, Allen-Vercoe E, Holt RA.

Microbiome. 2013 May 15;1(1):16. doi: 10.1186/2049-2618-1-16.

8.

Aspirin versus low-molecular-weight heparin for extended venous thromboembolism prophylaxis after total hip arthroplasty: a randomized trial.

Anderson DR, Dunbar MJ, Bohm ER, Belzile E, Kahn SR, Zukor D, Fisher W, Gofton W, Gross P, Pelet S, Crowther M, MacDonald S, Kim P, Pleasance S, Davis N, Andreou P, Wells P, Kovacs M, Rodger MA, Ramsay T, Carrier M, Vendittoli PA.

Ann Intern Med. 2013 Jun 4;158(11):800-6. doi: 10.7326/0003-4819-158-11-201306040-00004.

PMID:
23732713
9.

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data.

Birol I, Raymond A, Jackman SD, Pleasance S, Coope R, Taylor GA, Yuen MM, Keeling CI, Brand D, Vandervalk BP, Kirk H, Pandoh P, Moore RA, Zhao Y, Mungall AJ, Jaquish B, Yanchuk A, Ritland C, Boyle B, Bousquet J, Ritland K, Mackay J, Bohlmann J, Jones SJ.

Bioinformatics. 2013 Jun 15;29(12):1492-7. doi: 10.1093/bioinformatics/btt178. Epub 2013 May 22.

10.

Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals.

Chaudhuri RR, Morgan E, Peters SE, Pleasance SJ, Hudson DL, Davies HM, Wang J, van Diemen PM, Buckley AM, Bowen AJ, Pullinger GD, Turner DJ, Langridge GC, Turner AK, Parkhill J, Charles IG, Maskell DJ, Stevens MP.

PLoS Genet. 2013 Apr;9(4):e1003456. doi: 10.1371/journal.pgen.1003456. Epub 2013 Apr 18.

11.

UHPLC for the separation of proteins and peptides.

Howard JW, Kay RG, Pleasance S, Creaser CS.

Bioanalysis. 2012 Dec;4(24):2971-88. doi: 10.4155/bio.12.283. Review.

PMID:
23244286
12.

A novel mass spectrometry-based method for determining insulin-like growth factor 1: assessment in a cohort of subjects with newly diagnosed acromegaly.

Kay R, Halsall DJ, Annamalai AK, Kandasamy N, Taylor K, Fenwick S, Webb A, Wark G, Pleasance S, Gurnell M.

Clin Endocrinol (Oxf). 2013 Mar;78(3):424-30. doi: 10.1111/cen.12085.

PMID:
23121616
13.

Subsegmental pulmonary embolism diagnosed by computed tomography: incidence and clinical implications. A systematic review and meta-analysis of the management outcome studies.

Carrier M, Righini M, Wells PS, Perrier A, Anderson DR, Rodger MA, Pleasance S, Le Gal G.

J Thromb Haemost. 2010 Aug;8(8):1716-22. doi: 10.1111/j.1538-7836.2010.03938.x. Epub 2010 Jun 7. Review.

14.

Development of high-throughput chemical extraction techniques and quantitative HPLC-MS/MS (SRM) assays for clinically relevant plasma proteins.

Barton C, Kay RG, Gentzer W, Vitzthum F, Pleasance S.

J Proteome Res. 2010 Jan;9(1):333-40. doi: 10.1021/pr900658d.

PMID:
19921931
15.

Salmonella enterica serovar typhimurium trxA mutants are protective against virulent challenge and induce less inflammation than the live-attenuated vaccine strain SL3261.

Peters SE, Paterson GK, Bandularatne ES, Northen HC, Pleasance S, Willers C, Wang J, Foote AK, Constantino-Casas F, Scase TJ, Blacklaws BA, Bryant CE, Mastroeni P, Charles IG, Maskell DJ.

Infect Immun. 2010 Jan;78(1):326-36. doi: 10.1128/IAI.00768-09. Epub 2009 Nov 2.

16.

Comprehensive identification of Salmonella enterica serovar typhimurium genes required for infection of BALB/c mice.

Chaudhuri RR, Peters SE, Pleasance SJ, Northen H, Willers C, Paterson GK, Cone DB, Allen AG, Owen PJ, Shalom G, Stekel DJ, Charles IG, Maskell DJ.

PLoS Pathog. 2009 Jul;5(7):e1000529. doi: 10.1371/journal.ppat.1000529. Epub 2009 Jul 31.

17.

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH).

Chaudhuri RR, Allen AG, Owen PJ, Shalom G, Stone K, Harrison M, Burgis TA, Lockyer M, Garcia-Lara J, Foster SJ, Pleasance SJ, Peters SE, Maskell DJ, Charles IG.

BMC Genomics. 2009 Jul 1;10:291. doi: 10.1186/1471-2164-10-291.

18.

Computed tomographic pulmonary angiography vs ventilation-perfusion lung scanning in patients with suspected pulmonary embolism: a randomized controlled trial.

Anderson DR, Kahn SR, Rodger MA, Kovacs MJ, Morris T, Hirsch A, Lang E, Stiell I, Kovacs G, Dreyer J, Dennie C, Cartier Y, Barnes D, Burton E, Pleasance S, Skedgel C, O'Rouke K, Wells PS.

JAMA. 2007 Dec 19;298(23):2743-53. doi: 10.1001/jama.298.23.2743.

PMID:
18165667
19.
20.

The cost-effectiveness of extended-duration antithrombotic prophylaxis after total hip arthroplasty.

Skedgel C, Goeree R, Pleasance S, Thompson K, O'brien B, Anderson D.

J Bone Joint Surg Am. 2007 Apr;89(4):819-28. Review.

PMID:
17403806
21.

Use of spiral computed tomography contrast angiography and ultrasonography to exclude the diagnosis of pulmonary embolism in the emergency department.

Anderson DR, Kovacs MJ, Dennie C, Kovacs G, Stiell I, Dreyer J, McCarron B, Pleasance S, Burton E, Cartier Y, Wells PS.

J Emerg Med. 2005 Nov;29(4):399-404.

PMID:
16243195
22.

The pre-senile delusion of infestation.

Ekbom KA, Yorston G, Miesch M, Pleasance S, Rubbert S.

Hist Psychiatry. 2003 Jun;14(54 Pt 2):229-56. No abstract available.

PMID:
14521159
23.

A conserved region within the Bordetella pertussis autotransporter BrkA is necessary for folding of its passenger domain.

Oliver DC, Huang G, Nodel E, Pleasance S, Fernandez RC.

Mol Microbiol. 2003 Mar;47(5):1367-83.

24.

An interaction between the cytochrome P450 probe substrates chlorzoxazone (CYP2E1) and midazolam (CYP3A).

Palmer JL, Scott RJ, Gibson A, Dickins M, Pleasance S.

Br J Clin Pharmacol. 2001 Nov;52(5):555-61.

25.

Quantitative analysis of pharmaceuticals in biological fluids using high-performance liquid chromatography coupled to mass spectrometry: a review.

Plumb RS, Dear GJ, Mallett DN, Higton DM, Pleasance S, Biddlecombe RA.

Xenobiotica. 2001 Aug-Sep;31(8-9):599-617. Review.

PMID:
11569528
26.
27.

Automated protein precipitation by filtration in the 96-well format.

Biddlecombe RA, Pleasance S.

J Chromatogr B Biomed Sci Appl. 1999 Nov 12;734(2):257-65.

PMID:
10595723
29.

Determination of the enantiomers of salbutamol and its 4-O-sulphate metabolites in biological matrices by chiral liquid chromatography tandem mass spectrometry.

Joyce KB, Jones AE, Scott RJ, Biddlecombe RA, Pleasance S.

Rapid Commun Mass Spectrom. 1998;12(23):1899-910.

PMID:
9842741
30.

Determination of the glucocorticoid fluticasone propionate in plasma by automated solid-phase extraction and liquid chromatography-tandem mass spectrometry.

Callejas SL, Biddlecombe RA, Jones AE, Joyce KB, Pereira AI, Pleasance S.

J Chromatogr B Biomed Sci Appl. 1998 Nov 6;718(2):243-50.

PMID:
9840434
31.
33.

Identification of urinary and biliary conjugated metabolites of the neuromuscular blocker 51W89 by liquid chromatography/mass spectrometry.

Dear GJ, Harrelson JC, Jones AE, Johnson TE, Pleasance S.

Rapid Commun Mass Spectrom. 1995;9(14):1457-64.

PMID:
8534894
34.
35.

Detection of new 7-O-acyl derivatives of diarrhetic shellfish poisoning toxins by liquid chromatography-mass spectrometry.

Marr JC, Hu T, Pleasance S, Quilliam MA, Wright JL.

Toxicon. 1992 Dec;30(12):1621-30.

PMID:
1488771
36.

Determination of erythromycin A in salmon tissue by liquid chromatography with ion-spray mass spectrometry.

Pleasance S, Kelly J, LeBlanc MD, Quilliam MA, Boyd RK, Kitts DD, McErlane K, Bailey MR, North DH.

Biol Mass Spectrom. 1992 Dec;21(12):675-87.

PMID:
1477111
37.

Synthesis, characterization, and Ca2+ antagonistic activity of diltiazem metabolites.

Li R, Farmer PS, Xie M, Quilliam MA, Pleasance S, Howlett SE, Yeung PK.

J Med Chem. 1992 Aug 21;35(17):3246-53.

PMID:
1507210
38.

An evaluation of atmospheric pressure ionization techniques for the analysis of N-Methyl carbamate pesticides by liquid chromatography mass spectrometry.

Pleasance S, Anacleto JF, Bailey MR, North DH.

J Am Soc Mass Spectrom. 1992 May;3(4):378-97. doi: 10.1016/1044-0305(92)87066-8.

PMID:
24243049
39.

C60 and C70 fullerene isomers generated in flames. Detection and verification by liquid chromatography/mass spectrometry analyses.

Anacleto JF, Perreault H, Boyd RK, Pleasance S, Quilliam MA, Sim PG, Howard JB, Makarovsky Y, Lafleur AL.

Rapid Commun Mass Spectrom. 1992 Mar;6(3):214-20.

PMID:
1554901
43.

Analysis of peptides and proteins by capillary electrophoresis/mass spectrometry using acidic buffers and coated capillaries.

Thibault P, Paris C, Pleasance S.

Rapid Commun Mass Spectrom. 1991 Oct;5(10):484-90.

PMID:
1841647
45.

Analysis of paralytic shellfish poisons by capillary electrophoresis.

Thibault P, Pleasance S, Laycock MV.

J Chromatogr. 1991 Apr 12;542(2):483-501.

PMID:
1908861
46.

Continuous flow fast atom bombardment with packed microcolumns: A comparison of precolumn versus coaxial matrix delivery.

Pleasance S, Thibault P, Moseley MA, Deterding LJ, Tomer KB, Jorgenson JW.

J Am Soc Mass Spectrom. 1990 Jul;1(4):312-9. doi: 10.1016/1044-0305(90)85007-9.

PMID:
24248825
47.
48.

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