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Items: 28

1.

Epidemiology, pathophysiology and clinical outcomes for heart failure patients with a mid-range ejection fraction.

Rastogi A, Novak E, Platts AE, Mann DL.

Eur J Heart Fail. 2017 Dec;19(12):1597-1605. doi: 10.1002/ejhf.879. Epub 2017 Jun 14.

2.

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR.

Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16.

3.

The Rice Paradox: Multiple Origins but Single Domestication in Asian Rice.

Choi JY, Platts AE, Fuller DQ, Hsing YI, Wing RA, Purugganan MD.

Mol Biol Evol. 2017 Apr 1;34(4):969-979. doi: 10.1093/molbev/msx049.

4.

The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.

5.

Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris.

Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, Wright SI.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2806-11. doi: 10.1073/pnas.1412277112. Epub 2015 Feb 17.

6.

Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora.

Williamson RJ, Josephs EB, Platts AE, Hazzouri KM, Haudry A, Blanchette M, Wright SI.

PLoS Genet. 2014 Sep 25;10(9):e1004622. doi: 10.1371/journal.pgen.1004622. eCollection 2014 Sep.

7.

Comparable performance of the Kansas City Cardiomyopathy Questionnaire in patients with heart failure with preserved and reduced ejection fraction.

Joseph SM, Novak E, Arnold SV, Jones PG, Khattak H, Platts AE, Dávila-Román VG, Mann DL, Spertus JA.

Circ Heart Fail. 2013 Nov;6(6):1139-46. doi: 10.1161/CIRCHEARTFAILURE.113.000359. Epub 2013 Oct 15.

8.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
9.

The Capsella rubella genome and the genomic consequences of rapid mating system evolution.

Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, Steffen J, Takuno S, Brandvain Y, Coop G, Andolfatto P, Hu TT, Blanchette M, Clark RM, Quesneville H, Nordborg M, Gaut BS, Lysak MA, Jenkins J, Grimwood J, Chapman J, Prochnik S, Shu S, Rokhsar D, Schmutz J, Weigel D, Wright SI.

Nat Genet. 2013 Jul;45(7):831-5. doi: 10.1038/ng.2669. Epub 2013 Jun 9.

PMID:
23749190
10.

Secondary evolution of a self-incompatibility locus in the Brassicaceae genus Leavenworthia.

Chantha SC, Herman AC, Platts AE, Vekemans X, Schoen DJ.

PLoS Biol. 2013;11(5):e1001560. doi: 10.1371/journal.pbio.1001560. Epub 2013 May 14.

11.

Interrogating the transgenic genome: development of an interspecies tiling array.

Johnson GD, Platts AE, Lalancette C, Goodrich R, Heng HH, Krawetz SA.

Syst Biol Reprod Med. 2011 Feb;57(1-2):54-62. doi: 10.3109/19396368.2010.506000. Epub 2011 Jan 10.

12.

Nuclear matrix association: switching to the invasive cytotrophoblast.

Drennan KJ, Linnemann AK, Platts AE, Heng HH, Armant DR, Krawetz SA.

Placenta. 2010 May;31(5):365-72. doi: 10.1016/j.placenta.2010.02.012. Epub 2010 Mar 25.

13.

Disease progression and solid tumor survival: a transcriptome decoherence model.

Platts AE, Lalancette C, Emery BR, Carrell DT, Krawetz SA.

Mol Cell Probes. 2010 Feb;24(1):53-60. doi: 10.1016/j.mcp.2009.09.005. Epub 2009 Oct 14.

14.

Massively parallel resequencing of the isogenic Drosophila melanogaster strain w(1118); iso-2; iso-3 identifies hotspots for mutations in sensory perception genes.

Platts AE, Land SJ, Chen L, Page GP, Rasouli P, Wang L, Lu X, Ruden DM.

Fly (Austin). 2009 Jul-Sep;3(3):192-203. Epub 2009 Jul 23.

15.

Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences.

Arpanahi A, Brinkworth M, Iles D, Krawetz SA, Paradowska A, Platts AE, Saida M, Steger K, Tedder P, Miller D.

Genome Res. 2009 Aug;19(8):1338-49. doi: 10.1101/gr.094953.109. Epub 2009 Jul 7.

16.

Identification of human sperm transcripts as candidate markers of male fertility.

Lalancette C, Platts AE, Johnson GD, Emery BR, Carrell DT, Krawetz SA.

J Mol Med (Berl). 2009 Jul;87(7):735-48. doi: 10.1007/s00109-009-0485-9. Epub 2009 May 24.

PMID:
19466390
17.

Differential nuclear scaffold/matrix attachment marks expressed genes.

Linnemann AK, Platts AE, Krawetz SA.

Hum Mol Genet. 2009 Feb 15;18(4):645-54. doi: 10.1093/hmg/ddn394. Epub 2008 Nov 18.

18.

Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex.

Ottaviani D, Lever E, Mitter R, Jones T, Forshew T, Christova R, Tomazou EM, Rakyan VK, Krawetz SA, Platts AE, Segarane B, Beck S, Sheer D.

Genome Res. 2008 Nov;18(11):1778-86. doi: 10.1101/gr.082313.108. Epub 2008 Oct 10.

19.

Computational identification of transcription frameworks of early committed spermatogenic cells.

Lalancette C, Platts AE, Lu Y, Lu S, Krawetz SA.

Mol Genet Genomics. 2008 Sep;280(3):263-74. doi: 10.1007/s00438-008-0361-2. Epub 2008 Jul 10.

20.

Real-time PCR quantification using a variable reaction efficiency model.

Platts AE, Johnson GD, Linnemann AK, Krawetz SA.

Anal Biochem. 2008 Sep 15;380(2):315-22. doi: 10.1016/j.ab.2008.05.048. Epub 2008 Jun 5.

21.

The KLAB Toolbox: a suite of in-house software applications for epigenetic analysis.

Naismith L, Lalancette C, Platts AE, Krawetz SA.

Syst Biol Reprod Med. 2008 Mar-Apr;54(2):97-108. doi: 10.1080/19396360801935644.

PMID:
18446650
22.

Tracking chromatin states using controlled DNase I treatment and real-time PCR.

Martins RP, Platts AE, Krawetz SA.

Cell Mol Biol Lett. 2007;12(4):545-55. Epub 2007 Jun 24.

23.

Genomewide identification of nuclear matrix attachment regions: an analysis of methods.

Linnemann AK, Platts AE, Doggett N, Gluch A, Bode J, Krawetz SA.

Biochem Soc Trans. 2007 Jun;35(Pt 3):612-7. Review.

PMID:
17511663
24.

Hu/Mu ProtIn oligonucleotide microarray: dual-species array for profiling protease and protease inhibitor gene expression in tumors and their microenvironment.

Schwartz DR, Moin K, Yao B, Matrisian LM, Coussens LM, Bugge TH, Fingleton B, Acuff HB, Sinnamon M, Nassar H, Platts AE, Krawetz SA, Linebaugh BE, Sloane BF.

Mol Cancer Res. 2007 May;5(5):443-54.

25.

Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs.

Platts AE, Dix DJ, Chemes HE, Thompson KE, Goodrich R, Rockett JC, Rawe VY, Quintana S, Diamond MP, Strader LF, Krawetz SA.

Hum Mol Genet. 2007 Apr 1;16(7):763-73. Epub 2007 Feb 27.

PMID:
17327269
26.

In-silico prediction and observations of nuclear matrix attachment.

Platts AE, Quayle AK, Krawetz SA.

Cell Mol Biol Lett. 2006;11(2):191-213.

27.

K-SPMM: a database of murine spermatogenic promoters modules & motifs.

Lu Y, Platts AE, Ostermeier GC, Krawetz SA.

BMC Bioinformatics. 2006 May 3;7:238.

28.

LARaLink 2.0: a comprehensive aid to basic and clinical cytogenetic research.

Platts AE, Moldenhauer JS, Fayz B, Wang D, Borgaonkar DS, Krawetz SA.

Genet Test. 2005 Winter;9(4):334-41.

PMID:
16379548

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