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Opportunities for genomic selection in American mink: A simulation study.

Karimi K, Sargolzaei M, Plastow GS, Wang Z, Miar Y.

PLoS One. 2019 Mar 14;14(3):e0213873. doi: 10.1371/journal.pone.0213873. eCollection 2019.


Novel Resilience Phenotypes Using Feed Intake Data From a Natural Disease Challenge Model in Wean-to-Finish Pigs.

Putz AM, Harding JCS, Dyck MK, Fortin F, Plastow GS, Dekkers JCM; PigGen Canada.

Front Genet. 2019 Jan 8;9:660. doi: 10.3389/fgene.2018.00660. eCollection 2018.


Putative Loci Causing Early Embryonic Mortality in Duroc Swine.

Zhang C, MacNeil MD, Kemp RA, Dyck MK, Plastow GS.

Front Genet. 2018 Dec 17;9:655. doi: 10.3389/fgene.2018.00655. eCollection 2018.


Identification of factors associated with virus level in tonsils of pigs experimentally infected with porcine reproductive and respiratory syndrome virus.

Hess AS, Lunney JK, Abrams S, Choi I, Trible BR, Hess MK, Rowland RRR, Plastow GS, Dekkers JCM.

J Anim Sci. 2019 Feb 1;97(2):536-547. doi: 10.1093/jas/sky446.


Synaptogyrin-2 influences replication of Porcine circovirus 2.

Walker LR, Engle TB, Vu H, Tosky ER, Nonneman DJ, Smith TPL, Borza T, Burkey TE, Plastow GS, Kachman SD, Ciobanu DC.

PLoS Genet. 2018 Oct 31;14(10):e1007750. doi: 10.1371/journal.pgen.1007750. eCollection 2018 Oct.


Genome-wide association scan for heterotic quantitative trait loci in multi-breed and crossbred beef cattle.

Akanno EC, Chen L, Abo-Ismail MK, Crowley JJ, Wang Z, Li C, Basarab JA, MacNeil MD, Plastow GS.

Genet Sel Evol. 2018 Oct 5;50(1):48. doi: 10.1186/s12711-018-0405-y.


Genetic Relationships of Antibody Response, Viremia Level and Weight Gain in Pigs Experimentally Infected with Porcine Reproductive and Respiratory Syndrome Virus.

Hess AS, Trible BR, Hess MK, Rowland RRR, Lunney JK, Plastow GS, Dekkers JCM.

J Anim Sci. 2018 Jun 14. doi: 10.1093/jas/sky229. [Epub ahead of print]


Genetic and phenotypic parameters for litter size, survival rate, gestation length, and litter weight traits in American mink.

Karimi K, Sargolzaei M, Plastow GS, Wang Z, Miar Y.

J Anim Sci. 2018 Jun 29;96(7):2596-2606. doi: 10.1093/jas/sky178.


Genomic investigation of porcine periweaning failure to thrive syndrome (PFTS).

Bertolini F, Yang T, Huang Y, Harding JCS, Plastow GS, Rothschild MF.

Vet Rec. 2018 Jul 21;183(3):95. doi: 10.1136/vr.104825. Epub 2018 Apr 25.


Development and validation of a small SNP panel for feed efficiency in beef cattle.

Abo-Ismail MK, Lansink N, Akanno E, Karisa BK, Crowley JJ, Moore SS, Bork E, Stothard P, Basarab JA, Plastow GS.

J Anim Sci. 2018 Mar 6;96(2):375-397. doi: 10.1093/jas/sky020.


Modeling heterotic effects in beef cattle using genome-wide SNP-marker genotypes.

Akanno EC, Abo-Ismail MK, Chen L, Crowley JJ, Wang Z, Li C, Basarab JA, MacNeil MD, Plastow GS.

J Anim Sci. 2018 Apr 3;96(3):830-845. doi: 10.1093/jas/skx002.


Coadministration of the Campylobacter jejuni N-Glycan-Based Vaccine with Probiotics Improves Vaccine Performance in Broiler Chickens.

Nothaft H, Perez-Muñoz ME, Gouveia GJ, Duar RM, Wanford JJ, Lango-Scholey L, Panagos CG, Srithayakumar V, Plastow GS, Coros C, Bayliss CD, Edison AS, Walter J, Szymanski CM.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01523-17. doi: 10.1128/AEM.01523-17. Print 2017 Dec 1.


Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.


Livestock metabolomics and the livestock metabolome: A systematic review.

Goldansaz SA, Guo AC, Sajed T, Steele MA, Plastow GS, Wishart DS.

PLoS One. 2017 May 22;12(5):e0177675. doi: 10.1371/journal.pone.0177675. eCollection 2017. Review.


Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection.

Kommadath A, Bao H, Choi I, Reecy JM, Koltes JE, Fritz-Waters E, Eisley CJ, Grant JR, Rowland RR, Tuggle CK, Dekkers JC, Lunney JK, Guan LL, Stothard P, Plastow GS.

Sci Rep. 2017 Apr 10;7:46203. doi: 10.1038/srep46203.


Novel insights into host responses and reproductive pathophysiology of porcine reproductive and respiratory syndrome caused by PRRSV-2.

Harding JCS, Ladinig A, Novakovic P, Detmer SE, Wilkinson JM, Yang T, Lunney JK, Plastow GS.

Vet Microbiol. 2017 Sep;209:114-123. doi: 10.1016/j.vetmic.2017.02.019. Epub 2017 Mar 2. Review.


Genomic investigation of piglet resilience following porcine epidemic diarrhea outbreaks.

Bertolini F, Harding JC, Mote B, Ladinig A, Plastow GS, Rothschild MF.

Anim Genet. 2017 Apr;48(2):228-232. doi: 10.1111/age.12522. Epub 2016 Dec 12.


Estimation of genetic parameters for traits associated with reproduction, lactation, and efficiency in sows.

Thekkoot DM, Kemp RA, Rothschild MF, Plastow GS, Dekkers JC.

J Anim Sci. 2016 Nov;94(11):4516-4529. doi: 10.2527/jas.2015-0255.


GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes.

Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, Chamberlain A, Cheng H, Crooijmans RP, Delany ME, Finno CJ, Groenen MA, Hayes B, Lunney JK, Petersen JL, Plastow GS, Schmidt CJ, Song J, Watson M.

Anim Genet. 2016 Oct;47(5):528-33. doi: 10.1111/age.12466. Epub 2016 Jul 24.


Genetic and genomic basis of antibody response to porcine reproductive and respiratory syndrome (PRRS) in gilts and sows.

Serão NV, Kemp RA, Mote BE, Willson P, Harding JC, Bishop SC, Plastow GS, Dekkers JC.

Genet Sel Evol. 2016 Jul 14;48(1):51. doi: 10.1186/s12711-016-0230-0.


Comparison of host genetic factors influencing pig response to infection with two North American isolates of porcine reproductive and respiratory syndrome virus.

Hess AS, Islam Z, Hess MK, Rowland RR, Lunney JK, Doeschl-Wilson A, Plastow GS, Dekkers JC.

Genet Sel Evol. 2016 Jun 20;48(1):43. doi: 10.1186/s12711-016-0222-0.


Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus.

Wilkinson JM, Bao H, Ladinig A, Hong L, Stothard P, Lunney JK, Plastow GS, Harding JC.

BMC Genomics. 2016 May 20;17:383. doi: 10.1186/s12864-016-2720-4.


Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection.

Wilkinson JM, Ladinig A, Bao H, Kommadath A, Stothard P, Lunney JK, Harding JC, Plastow GS.

PLoS One. 2016 Apr 19;11(4):e0153615. doi: 10.1371/journal.pone.0153615. eCollection 2016.


Use of Genomic Tools to Improve Cattle Health in the Context of Infectious Diseases.

Raszek MM, Guan le L, Plastow GS.

Front Genet. 2016 Mar 7;7:30. doi: 10.3389/fgene.2016.00030. eCollection 2016. Review.


Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL.

Schroyen M, Eisley C, Koltes JE, Fritz-Waters E, Choi I, Plastow GS, Guan L, Stothard P, Bao H, Kommadath A, Reecy JM, Lunney JK, Rowland RR, Dekkers JC, Tuggle CK.

BMC Genomics. 2016 Mar 8;17:196. doi: 10.1186/s12864-016-2547-z.


A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project.

Stothard P, Liao X, Arantes AS, De Pauw M, Coros C, Plastow GS, Sargolzaei M, Crowley JJ, Basarab JA, Schenkel F, Moore S, Miller SP.

Gigascience. 2015 Oct 26;4:49. doi: 10.1186/s13742-015-0090-5. eCollection 2015.


Transcriptomic and Epigenetic Profiling of the Lung of Influenza-Infected Pigs: A Comparison of Different Birth Weight and Susceptibility Groups.

Wilkinson JM, Gunvaldsen RE, Detmer SE, Dyck MK, Dixon WT, Foxcroft GR, Plastow GS, Harding JC.

PLoS One. 2015 Sep 22;10(9):e0138653. doi: 10.1371/journal.pone.0138653. eCollection 2015.


Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine.

Bao H, Kommadath A, Liang G, Sun X, Arantes AS, Tuggle CK, Bearson SM, Plastow GS, Stothard P, Guan le L.

Sci Rep. 2015 Jul 31;5:12620. doi: 10.1038/srep12620.


Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection.

Koltes JE, Fritz-Waters E, Eisley CJ, Choi I, Bao H, Kommadath A, Serão NV, Boddicker NJ, Abrams SM, Schroyen M, Loyd H, Tuggle CK, Plastow GS, Guan L, Stothard P, Lunney JK, Liu P, Carpenter S, Rowland RR, Dekkers JC, Reecy JM.

BMC Genomics. 2015 May 28;16:412. doi: 10.1186/s12864-015-1635-9.


Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.


Variation in time and magnitude of immune response and viremia in experimental challenges with Porcine circovirus 2b.

Engle TB, Jobman EE, Moural TW, McKnite AM, Bundy JW, Barnes SY, Davis EH, Galeota JA, Burkey TE, Plastow GS, Kachman SD, Ciobanu DC.

BMC Vet Res. 2014 Dec 4;10:286. doi: 10.1186/s12917-014-0286-4.


Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples.

Choi I, Bao H, Kommadath A, Hosseini A, Sun X, Meng Y, Stothard P, Plastow GS, Tuggle CK, Reecy JM, Fritz-Waters E, Abrams SM, Lunney JK, Guan le L.

BMC Genomics. 2014 Nov 4;15:954. doi: 10.1186/1471-2164-15-954.


Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding.

Kommadath A, Bao H, Arantes AS, Plastow GS, Tuggle CK, Bearson SM, Guan le L, Stothard P.

BMC Genomics. 2014 Jun 9;15:452. doi: 10.1186/1471-2164-15-452.


Genetic analysis of reproductive traits and antibody response in a PRRS outbreak herd.

Serão NV, Matika O, Kemp RA, Harding JC, Bishop SC, Plastow GS, Dekkers JC.

J Anim Sci. 2014 Jul;92(7):2905-21. doi: 10.2527/jas.2014-7821. Epub 2014 May 30.


Genetic and phenotypic parameters for carcass and meat quality traits in commercial crossbred pigs.

Miar Y, Plastow GS, Moore SS, Manafiazar G, Charagu P, Kemp RA, Van Haandel B, Huisman AE, Zhang CY, McKay RM, Bruce HL, Wang Z.

J Anim Sci. 2014 Jul;92(7):2869-84. doi: 10.2527/jas.2014-7685. Epub 2014 Apr 28.


MicroRNA buffering and altered variance of gene expression in response to Salmonella infection.

Bao H, Kommadath A, Plastow GS, Tuggle CK, Guan le L, Stothard P.

PLoS One. 2014 Apr 9;9(4):e94352. doi: 10.1371/journal.pone.0094352. eCollection 2014.


Associations between single nucleotide polymorphisms in 33 candidate genes and meat quality traits in commercial pigs.

Zhang CY, Wang Z, Bruce HL, Janz J, Goddard E, Moore S, Plastow GS.

Anim Genet. 2014 Aug;45(4):508-16. doi: 10.1111/age.12155. Epub 2014 Apr 7.


Livestock and the promise of genomics.

Ludu JS, Plastow GS.

Genome. 2013 Oct;56(10):556-66. doi: 10.1139/gen-2013-0080. Epub 2013 Jul 20. Review.


Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars.

Li M, Tian S, Jin L, Zhou G, Li Y, Zhang Y, Wang T, Yeung CK, Chen L, Ma J, Zhang J, Jiang A, Li J, Zhou C, Zhang J, Liu Y, Sun X, Zhao H, Niu Z, Lou P, Xian L, Shen X, Liu S, Zhang S, Zhang M, Zhu L, Shuai S, Bai L, Tang G, Liu H, Jiang Y, Mai M, Xiao J, Wang X, Zhou Q, Wang Z, Stothard P, Xue M, Gao X, Luo Z, Gu Y, Zhu H, Hu X, Zhao Y, Plastow GS, Wang J, Jiang Z, Li K, Li N, Li X, Li R.

Nat Genet. 2013 Dec;45(12):1431-8. doi: 10.1038/ng.2811. Epub 2013 Oct 27.


Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species.

Bao H, Kommadath A, Sun X, Meng Y, Arantes AS, Plastow GS, Guan LL, Stothard P.

BMC Genomics. 2013 Sep 10;14:609. doi: 10.1186/1471-2164-14-609.


Influence of on-farm production practices on sensory and technological quality characteristics of pork loin.

Omana DA, Goddard E, Plastow GS, Janz J, Ma L, Anders S, Moore SS, Bruce HL.

Meat Sci. 2014 Jan;96(1):315-20. doi: 10.1016/j.meatsci.2013.07.011. Epub 2013 Jul 16.


Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle.

Karisa BK, Thomson J, Wang Z, Stothard P, Moore SS, Plastow GS.

J Anim Sci. 2013 Aug;91(8):3502-13. doi: 10.2527/jas.2012-6170. Epub 2013 Jun 4.


Effect of temperature and pH on postmortem color development of porcine M. longissimus dorsi and M. semimembranosus.

Duan Y, Huang L, Xie J, Yang K, Yuan F, Bruce HL, Plastow GS, Ma J, Huang L.

J Sci Food Agric. 2013 Mar 30;93(5):1206-10. doi: 10.1002/jsfa.5877. Epub 2012 Nov 19.


An atlas of DNA methylomes in porcine adipose and muscle tissues.

Li M, Wu H, Luo Z, Xia Y, Guan J, Wang T, Gu Y, Chen L, Zhang K, Ma J, Liu Y, Zhong Z, Nie J, Zhou S, Mu Z, Wang X, Qu J, Jing L, Wang H, Huang S, Yi N, Wang Z, Xi D, Wang J, Yin G, Wang L, Li N, Jiang Z, Lang Q, Xiao H, Jiang A, Zhu L, Jiang Y, Tang G, Mai M, Shuai S, Li N, Li K, Wang J, Zhang X, Li Y, Chen H, Gao X, Plastow GS, Beck S, Yang H, Wang J, Wang J, Li X, Li R.

Nat Commun. 2012 May 22;3:850. doi: 10.1038/ncomms1854.


Correlations between fat depot traits and fatty acid composition in abdominal subcutaneous adipose tissue and longissimus muscle: results from a White Duroc × Erhualian intercross F2 population.

Yang KX, Ma JW, Guo YM, Guo TF, Zhao YG, Ding NS, Betti M, Plastow GS, Huang LS.

J Anim Sci. 2010 Nov;88(11):3538-45. doi: 10.2527/jas.2009-2602. Epub 2010 Jul 9.


A major SNP resource for dissection of phenotypic and genetic variation in Pacific white shrimp (Litopenaeus vannamei).

Ciobanu DC, Bastiaansen JW, Magrin J, Rocha JL, Jiang DH, Yu N, Geiger B, Deeb N, Rocha D, Gong H, Kinghorn BP, Plastow GS, van der Steen HA, Mileham AJ.

Anim Genet. 2010 Feb;41(1):39-47. doi: 10.1111/j.1365-2052.2009.01961.x. Epub 2009 Oct 2.


Genes located on a SSC17 meat quality QTL region are associated with growth in outbred pig populations.

Ramos AM, Bastiaansen JW, Plastow GS, Rothschild MF.

Anim Genet. 2009 Oct;40(5):774-8. doi: 10.1111/j.1365-2052.2009.01907.x. Epub 2009 Jun 3.


Detailed characterization of the porcine MC4R gene in relation to fatness and growth.

Fan B, Onteru SK, Plastow GS, Rothschild MF.

Anim Genet. 2009 Aug;40(4):401-9. doi: 10.1111/j.1365-2052.2009.01853.x. Epub 2009 Apr 3.


Relationships between biochemical characteristics and meat quality of Longissimus thoracis and Semimembranosus muscles in five porcine lines.

Gil M, Delday MI, Gispert M, I Furnols MF, Maltin CM, Plastow GS, Klont R, Sosnicki AA, Carrión D.

Meat Sci. 2008 Nov;80(3):927-33. doi: 10.1016/j.meatsci.2008.04.016. Epub 2008 Apr 23.


Characterization of the porcine KIT ligand gene: expression analysis, genomic structure, polymorphism detection and association with coat colour traits.

Hadjiconstantouras C, Sargent CA, Skinner TM, Archibald AL, Haley CS, Plastow GS.

Anim Genet. 2008 Jun;39(3):217-24. doi: 10.1111/j.1365-2052.2008.01708.x. Epub 2008 Mar 3.


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