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Items: 25

1.

The N termini of the inhibitory γ-subunits of phosphodiesterase-6 (PDE6) from rod and cone photoreceptors differentially regulate transducin-mediated PDE6 activation.

Wang X, Plachetzki DC, Cote RH.

J Biol Chem. 2019 May 24;294(21):8351-8360. doi: 10.1074/jbc.RA119.007520. Epub 2019 Apr 8.

PMID:
30962282
2.

A mosaic of independent innovations involving eyes shut are critical for the evolutionary transition from fused to open rhabdoms.

Mahato S, Nie J, Plachetzki DC, Zelhof AC.

Dev Biol. 2018 Nov 15;443(2):188-202. doi: 10.1016/j.ydbio.2018.09.016. Epub 2018 Sep 19.

3.

Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia.

Schuelke TA, Wu G, Westbrook A, Woeste K, Plachetzki DC, Broders K, MacManes MD.

Genome Biol Evol. 2017 Dec 1;9(12):3312-3327. doi: 10.1093/gbe/evx242.

4.

Recruitment of Rod Photoreceptors from Short-Wavelength-Sensitive Cones during the Evolution of Nocturnal Vision in Mammals.

Kim JW, Yang HJ, Oel AP, Brooks MJ, Jia L, Plachetzki DC, Li W, Allison WT, Swaroop A.

Dev Cell. 2016 Jun 20;37(6):520-32. doi: 10.1016/j.devcel.2016.05.023.

5.

Ancient origins of metazoan gonadotropin-releasing hormone and their receptors revealed by phylogenomic analyses.

Plachetzki DC, Tsai PS, Kavanaugh SI, Sower SA.

Gen Comp Endocrinol. 2016 Aug 1;234:10-9. doi: 10.1016/j.ygcen.2016.06.007. Epub 2016 Jun 16.

PMID:
27318276
6.

Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa.

Borowiec ML, Lee EK, Chiu JC, Plachetzki DC.

BMC Genomics. 2015 Nov 23;16:987. doi: 10.1186/s12864-015-2146-4.

7.

A critical appraisal of the use of microRNA data in phylogenetics.

Thomson RC, Plachetzki DC, Mahler DL, Moore BR.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):E3659-68. doi: 10.1073/pnas.1407207111. Epub 2014 Jul 28.

8.

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S.

Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113.

9.

Gene co-expression modules underlying polymorphic and monomorphic zooids in the colonial hydrozoan, Hydractinia symbiolongicarpus.

Plachetzki DC, Sabrina Pankey M, Johnson BR, Ronne EJ, Kopp A, Grosberg RK.

Integr Comp Biol. 2014 Jul;54(2):276-83. doi: 10.1093/icb/icu080. Epub 2014 Jun 15.

PMID:
24935986
10.

Pan-metazoan phylogeny of the DMRT gene family: a framework for functional studies.

Wexler JR, Plachetzki DC, Kopp A.

Dev Genes Evol. 2014 Jun;224(3):175-81. doi: 10.1007/s00427-014-0473-0. Epub 2014 Jun 6.

PMID:
24903586
11.

The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression.

Atallah J, Plachetzki DC, Jasper WC, Johnson BR.

PLoS One. 2013 Dec 16;8(12):e84160. doi: 10.1371/journal.pone.0084160. eCollection 2013.

12.

The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions.

Johnson BR, Atallah J, Plachetzki DC.

BMC Genomics. 2013 Aug 28;14:586. doi: 10.1186/1471-2164-14-586.

13.

Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin.

Rivera AS, Ozturk N, Fahey B, Plachetzki DC, Degnan BM, Sancar A, Oakley TH.

J Exp Biol. 2012 Apr 15;215(Pt 8):1278-86. doi: 10.1242/jeb.067140.

14.

Cnidocyte discharge is regulated by light and opsin-mediated phototransduction.

Plachetzki DC, Fong CR, Oakley TH.

BMC Biol. 2012 Mar 5;10:17. doi: 10.1186/1741-7007-10-17.

15.

The Amphimedon queenslandica genome and the evolution of animal complexity.

Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS.

Nature. 2010 Aug 5;466(7307):720-6. doi: 10.1038/nature09201.

16.

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach.

Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH.

BMC Evol Biol. 2010 Apr 30;10:123. doi: 10.1186/1471-2148-10-123.

17.

The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway.

Plachetzki DC, Fong CR, Oakley TH.

Proc Biol Sci. 2010 Jul 7;277(1690):1963-9. doi: 10.1098/rspb.2009.1797. Epub 2010 Mar 10.

18.

Isolation and expression of Pax6 and atonal homologues in the American horseshoe crab, Limulus polyphemus.

Blackburn DC, Conley KW, Plachetzki DC, Kempler K, Battelle BA, Brown NL.

Dev Dyn. 2008 Aug;237(8):2209-19. doi: 10.1002/dvdy.21634.

19.

Furcation, field-splitting, and the evolutionary origins of novelty in arthropod photoreceptors.

Oakley TH, Plachetzki DC, Rivera AS.

Arthropod Struct Dev. 2007 Dec;36(4):386-400. Epub 2007 Sep 11.

PMID:
18089117
20.

Key transitions during the evolution of animal phototransduction: novelty, "tree-thinking," co-option, and co-duplication.

Plachetzki DC, Oakley TH.

Integr Comp Biol. 2007 Nov;47(5):759-69. doi: 10.1093/icb/icm050. Epub 2007 Jun 22.

PMID:
21669757
21.

The origins of novel protein interactions during animal opsin evolution.

Plachetzki DC, Degnan BM, Oakley TH.

PLoS One. 2007 Oct 17;2(10):e1054.

22.

New insights into the evolutionary history of photoreceptor cells.

Plachetzki DC, Serb JM, Oakley TH.

Trends Ecol Evol. 2005 Sep;20(9):465-7. Epub 2005 Jul 18.

PMID:
16701418
23.

NOVOcan: a molecular link among selected glial cells.

Szuchet S, Plachetzki DC, Seeger MA, Domowicz MS, Szele FG.

Biophys Chem. 2004 Mar 1;108(1-3):245-58.

PMID:
15043933
24.
25.

Oligodendrocyte transmembrane protein: a novel member of the glutamate-binding protein subfamily.

Szuchet S, Plachetzki DC, Eaton KS.

Biochem Biophys Res Commun. 2001 May 18;283(4):900-7.

PMID:
11350070

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