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Items: 24

1.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
2.

Design, synthesis and perception of fluorescently labeled isoprenoid cytokinins.

Kubiasová K, Mik V, Nisler J, Hönig M, Husičková A, Spíchal L, Pěkná Z, Šamajová O, Doležal K, Plíhal O, Benková E, Strnad M, Plíhalová L.

Phytochemistry. 2018 Jun;150:1-11. doi: 10.1016/j.phytochem.2018.02.015. Epub 2018 Mar 7.

PMID:
29524794
3.

The Root Growth-Regulating Brevicompanine Natural Products Modulate the Plant Circadian Clock.

de Montaigu A, Oeljeklaus J, Krahn JH, Suliman MNS, Halder V, de Ansorena E, Nickel S, Schlicht M, Plíhal O, Kubiasová K, Radová L, Kracher B, Tóth R, Kaschani F, Coupland G, Kombrink E, Kaiser M.

ACS Chem Biol. 2017 Jun 16;12(6):1466-1471. doi: 10.1021/acschembio.6b00978. Epub 2017 Apr 19.

4.

Light influences cytokinin biosynthesis and sensing in Nostoc (cyanobacteria).

Frébortová J, Plíhal O, Florová V, Kokáš F, Kubiasová K, Greplová M, Šimura J, Novák O, Frébort I.

J Phycol. 2017 Jun;53(3):703-714. doi: 10.1111/jpy.12538. Epub 2017 Apr 26.

PMID:
28378335
5.

Cytokinin metabolism in maize: Novel evidence of cytokinin abundance, interconversions and formation of a new trans-zeatin metabolic product with a weak anticytokinin activity.

Hluska T, Dobrev PI, Tarkowská D, Frébortová J, Zalabák D, Kopečný D, Plíhal O, Kokáš F, Briozzo P, Zatloukal M, Motyka V, Galuszka P.

Plant Sci. 2016 Jun;247:127-37. doi: 10.1016/j.plantsci.2016.03.014. Epub 2016 Mar 29.

PMID:
27095406
6.

Maize cytokinin dehydrogenase isozymes are localized predominantly to the vacuoles.

Zalabák D, Johnová P, Plíhal O, Šenková K, Šamajová O, Jiskrová E, Novák O, Jackson D, Mohanty A, Galuszka P.

Plant Physiol Biochem. 2016 Jul;104:114-24. doi: 10.1016/j.plaphy.2016.03.013. Epub 2016 Mar 14.

PMID:
27031423
7.

Transgenic barley overexpressing a cytokinin dehydrogenase gene shows greater tolerance to drought stress.

Pospíšilová H, Jiskrová E, Vojta P, Mrízová K, Kokáš F, Čudejková MM, Bergougnoux V, Plíhal O, Klimešová J, Novák O, Dzurová L, Frébort I, Galuszka P.

N Biotechnol. 2016 Sep 25;33(5 Pt B):692-705. doi: 10.1016/j.nbt.2015.12.005. Epub 2016 Jan 7.

PMID:
26773738
8.

C2-substituted aromatic cytokinin sugar conjugates delay the onset of senescence by maintaining the activity of the photosynthetic apparatus.

Vylíčilová H, Husičková A, Spíchal L, Srovnal J, Doležal K, Plíhal O, Plíhalová L.

Phytochemistry. 2016 Feb;122:22-33. doi: 10.1016/j.phytochem.2015.12.001. Epub 2015 Dec 17.

PMID:
26706318
9.

Identification of AHK2- and AHK3-like cytokinin receptors in Brassica napus reveals two subfamilies of AHK2 orthologues.

Kuderová A, Gallová L, Kuricová K, Nejedlá E, Čurdová A, Micenková L, Plíhal O, Šmajs D, Spíchal L, Hejátko J.

J Exp Bot. 2015 Jan;66(1):339-53. doi: 10.1093/jxb/eru422. Epub 2014 Oct 21.

PMID:
25336686
10.

N9-substituted aromatic cytokinins with negligible side effects on root development are an emerging tool for in vitro culturing.

Plíhal O, Szüčová L, Galuszka P.

Plant Signal Behav. 2013 Jun;8(6):e24392. doi: 10.4161/psb.24392. Epub 2013 Apr 19.

11.

Erratum to: Purification and characterization of a nitrilase from Aspergillus niger K10.

Kaplan O, Vejvoda V, Plíhal O, Pompach P, Kavan D, Bojarová P, Bezouška K, Macková M, Cantarella M, Jirků V, Křen V, Martínková L.

Appl Microbiol Biotechnol. 2013 Apr;97(8):3745-6. doi: 10.1007/s00253-013-4743-y. No abstract available.

PMID:
23455586
12.

NITRILASE1 regulates the exit from proliferation, genome stability and plant development.

Doskočilová A, Kohoutová L, Volc J, Kourová H, Benada O, Chumová J, Plíhal O, Petrovská B, Halada P, Bögre L, Binarová P.

New Phytol. 2013 May;198(3):685-98. doi: 10.1111/nph.12185. Epub 2013 Feb 25.

13.

Phenyl-adenine, identified in a LIGHT-DEPENDENT SHORT HYPOCOTYLS4-assisted chemical screen, is a potent compound for shoot regeneration through the inhibition of CYTOKININ OXIDASE/DEHYDROGENASE activity.

Motte H, Galuszka P, Spíchal L, Tarkowski P, Plíhal O, Šmehilová M, Jaworek P, Vereecke D, Werbrouck S, Geelen D.

Plant Physiol. 2013 Mar;161(3):1229-41. doi: 10.1104/pp.112.210716. Epub 2013 Jan 3.

14.

Novel cytokinin derivatives do not show negative effects on root growth and proliferation in submicromolar range.

Podlešáková K, Zalabák D, Cudejková M, Plíhal O, Szüčová L, Doležal K, Spíchal L, Strnad M, Galuszka P.

PLoS One. 2012;7(6):e39293. doi: 10.1371/journal.pone.0039293. Epub 2012 Jun 18.

15.

Improvement of stress tolerance in plants by genetic manipulation of mitogen-activated protein kinases.

Šamajová O, Plíhal O, Al-Yousif M, Hirt H, Šamaj J.

Biotechnol Adv. 2013 Jan-Feb;31(1):118-28. doi: 10.1016/j.biotechadv.2011.12.002. Epub 2011 Dec 14. Review.

PMID:
22198202
16.

Plant Aurora kinases play a role in maintenance of primary meristems and control of endoreduplication.

Petrovská B, Cenklová V, Pochylová Z, Kourová H, Doskočilová A, Plíhal O, Binarová L, Binarová P.

New Phytol. 2012 Feb;193(3):590-604. doi: 10.1111/j.1469-8137.2011.03989.x. Epub 2011 Dec 9.

17.

N9-Substituted N⁶-[(3-methylbut-2-en-1-yl)amino]purine derivatives and their biological activity in selected cytokinin bioassays.

Mik V, Szüčová L, Spíchal L, Plíhal O, Nisler J, Zahajská L, Doležal K, Strnad M.

Bioorg Med Chem. 2011 Dec 1;19(23):7244-51. doi: 10.1016/j.bmc.2011.09.052. Epub 2011 Oct 5.

PMID:
22019467
18.

A nodulin/glutamine synthetase-like fusion protein is implicated in the regulation of root morphogenesis and in signalling triggered by flagellin.

Doskočilová A, Plíhal O, Volc J, Chumová J, Kourová H, Halada P, Petrovská B, Binarová P.

Planta. 2011 Sep;234(3):459-76. doi: 10.1007/s00425-011-1419-7. Epub 2011 Apr 30.

PMID:
21533644
19.

Heterologous expression, purification and characterization of nitrilase from Aspergillus niger K10.

Kaplan O, Bezouška K, Plíhal O, Ettrich R, Kulik N, Vaněk O, Kavan D, Benada O, Malandra A, Sveda O, Veselá AB, Rinágelová A, Slámová K, Cantarella M, Felsberg J, Dušková J, Dohnálek J, Kotik M, Křen V, Martínková L.

BMC Biotechnol. 2011 Jan 6;11:2. doi: 10.1186/1472-6750-11-2. Retraction in: BMC Biotechnol. 2013;13:57.

20.

Characteristics of Gloeophyllum trabeum alcohol oxidase, an extracellular source of H2O2 in brown rot decay of wood.

Daniel G, Volc J, Filonova L, Plíhal O, Kubátová E, Halada P.

Appl Environ Microbiol. 2007 Oct;73(19):6241-53. Epub 2007 Jul 27.

21.

Structure of the dimeric N-glycosylated form of fungal beta-N-acetylhexosaminidase revealed by computer modeling, vibrational spectroscopy, and biochemical studies.

Ettrich R, Kopecký V Jr, Hofbauerová K, Baumruk V, Novák P, Pompach P, Man P, Plíhal O, Kutý M, Kulik N, Sklenár J, Ryslavá H, Kren V, Bezouska K.

BMC Struct Biol. 2007 May 17;7:32.

22.

Large propeptides of fungal beta-N-acetylhexosaminidases are novel enzyme regulators that must be intracellularly processed to control activity, dimerization, and secretion into the extracellular environment.

Plíhal O, Sklenár J, Hofbauerová K, Novák P, Man P, Pompach P, Kavan D, Ryslavá H, Weignerová L, Charvátová-Pisvejcová A, Kren V, Bezouska K.

Biochemistry. 2007 Mar 13;46(10):2719-34. Epub 2007 Feb 16.

PMID:
17302431
23.

Purification and characterization of a nitrilase from Aspergillus niger K10.

Kaplan O, Vejvoda V, Plíhal O, Pompach P, Kavan D, Bojarová P, Bezouska K, Macková M, Cantarella M, Jirků V, Kren V, Martínková L.

Appl Microbiol Biotechnol. 2006 Dec;73(3):567-75. Epub 2006 Oct 24. Erratum in: Appl Microbiol Biotechnol. 2013 Apr;97(8):3745-6.

PMID:
17061133
24.

N-glycosylated catalytic unit meets O-glycosylated propeptide: complex protein architecture in a fungal hexosaminidase.

Plíhal O, Sklenár J, Kmonícková J, Man P, Pompach P, Havlícek V, Kren V, Bezouska K.

Biochem Soc Trans. 2004 Nov;32(Pt 5):764-5. Review.

PMID:
15494009

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