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Items: 1 to 50 of 114

1.

PTM-Logo: a program for generation of sequence logos based on position-specific background amino-acid probabilities.

Saethang T, Hodge K, Yang CR, Zhao Y, Kimkong I, Knepper MA, Pisitkun T.

Bioinformatics. 2019 Jul 18. pii: btz568. doi: 10.1093/bioinformatics/btz568. [Epub ahead of print]

PMID:
31318409
2.

Corrigendum to "Proteomic identification of predictive biomarkers for malignant transformation in complete hydatidiform moles" [Placenta 77 (2019) 58-64].

Vanichtantikul A, Hodge KG, Somparn P, Saethang T, Triratanachat S, Pisitkun T, Lertkhachonsuk R.

Placenta. 2019 Jul 9. pii: S0143-4004(19)30509-0. doi: 10.1016/j.placenta.2019.06.387. [Epub ahead of print] No abstract available.

PMID:
31300166
3.

Rapid Aldosterone-Mediated Signaling in the DCT Increases Activity of the Thiazide-Sensitive NaCl Cotransporter.

Cheng L, Poulsen SB, Wu Q, Esteva-Font C, Olesen ETB, Peng L, Olde B, Leeb-Lundberg LMF, Pisitkun T, Rieg T, Dimke H, Fenton RA.

J Am Soc Nephrol. 2019 Jun 28. pii: ASN.2018101025. doi: 10.1681/ASN.2018101025. [Epub ahead of print]

PMID:
31253651
4.

Flavors of Flaviviral RNA Structure: towards an Integrated View of RNA Function from Translation through Encapsidation.

Hodge K, Kamkaew M, Pisitkun T, Chimnaronk S.

Bioessays. 2019 Aug;41(8):e1900003. doi: 10.1002/bies.201900003. Epub 2019 Jun 18. Review.

PMID:
31210384
5.

Analysis of the Zika and Japanese Encephalitis Virus NS5 Interactomes.

Kovanich D, Saisawang C, Sittipaisankul P, Ramphan S, Kalpongnukul N, Somparn P, Pisitkun T, Smith DR.

J Proteome Res. 2019 Jun 27. doi: 10.1021/acs.jproteome.9b00318. [Epub ahead of print]

PMID:
31199156
6.

Hepatic protein Carbonylation profiles induced by lipid accumulation and oxidative stress for investigating cellular response to non-alcoholic fatty liver disease in vitro.

Chienwichai P, Reamtong O, Boonyuen U, Pisitkun T, Somparn P, Tharnpoophasiam P, Worakhunpiset S, Topanurak S.

Proteome Sci. 2019 Mar 27;17:1. doi: 10.1186/s12953-019-0149-9. eCollection 2019.

7.

Decreased Protein Kinase C-β Type II Associated with the Prominent Endotoxin Exhaustion in the Macrophage of FcGRIIb-/- Lupus Prone Mice is Revealed by Phosphoproteomic Analysis.

Ondee T, Jaroonwitchawan T, Pisitkun T, Gillen J, Nita-Lazar A, Leelahavanichkul A, Somparn P.

Int J Mol Sci. 2019 Mar 18;20(6). pii: E1354. doi: 10.3390/ijms20061354.

8.

Quantitative proteomic analysis of dermal papilla from male androgenetic alopecia comparing before and after treatment with low-level laser therapy.

Panchaprateep R, Pisitkun T, Kalpongnukul N.

Lasers Surg Med. 2019 Mar 7. doi: 10.1002/lsm.23074. [Epub ahead of print]

PMID:
30843235
9.

Proteomic identification of predictive biomarkers for malignant transformation in complete hydatidiform moles.

Vanichtantikul A, Hodge KG, Somparn P, Saethang T, Triratanachat S, Pisitkun T, Lertkhachonsuk R.

Placenta. 2019 Feb;77:58-64. doi: 10.1016/j.placenta.2019.02.004. Epub 2019 Feb 5. Erratum in: Placenta. 2019 Jul 9;:.

PMID:
30827356
10.

Oncoproteomic and gene expression analyses identify prognostic biomarkers for second primary malignancy in patients with head and neck squamous cell carcinoma.

Bunbanjerdsuk S, Vorasan N, Saethang T, Pongrujikorn T, Pangpunyakulchai D, Mongkonsiri N, Arsa L, Thokanit N, Pongsapich W, Anekpuritanang T, Ngamphaiboon N, Jinawath A, Sunpaweravong S, Pisitkun T, Suktitipat B, Jinawath N.

Mod Pathol. 2019 Jul;32(7):943-956. doi: 10.1038/s41379-019-0211-2. Epub 2019 Feb 8.

PMID:
30737471
11.

Sequence-based searching of custom proteome and transcriptome databases.

Medvar B, Sarkar A, Knepper M, Pisitkun T.

Physiol Rep. 2018 Sep;6(18):e13846. doi: 10.14814/phy2.13846.

12.

From Molecules to Mechanisms: Functional Proteomics and Its Application to Renal Tubule Physiology.

Rinschen MM, Limbutara K, Knepper MA, Payne DM, Pisitkun T.

Physiol Rev. 2018 Oct 1;98(4):2571-2606. doi: 10.1152/physrev.00057.2017. Review.

PMID:
30182799
13.

Comprehensive Proteomics Identification of IFN-λ3-regulated Antiviral Proteins in HBV-transfected Cells.

Makjaroen J, Somparn P, Hodge K, Poomipak W, Hirankarn N, Pisitkun T.

Mol Cell Proteomics. 2018 Nov;17(11):2197-2215. doi: 10.1074/mcp.RA118.000735. Epub 2018 Aug 10.

PMID:
30097535
14.

Human MicroRNAs Expression Profiles in Influenza B Virus-Infected Cells based on Illumina MiSeq Platform.

Khongnomnan K, Poomipak W, Praianantathavorn K, Saengchoowong S, Pisitkun T, Poovorawan Y, Payungporn S.

Microrna. 2018;7(3):204-214. doi: 10.2174/2211536607666180515111048.

PMID:
29766833
15.

Analysis of snake venom metalloproteinases from Myanmar Russell's viper transcriptome.

Yee KT, Tongsima S, Vasieva O, Ngamphiw C, Wilantho A, Wilkinson MC, Somparn P, Pisitkun T, Rojnuckarin P.

Toxicon. 2018 May;146:31-41. doi: 10.1016/j.toxicon.2018.03.005. Epub 2018 Mar 19.

PMID:
29567103
16.

RNA sequencing of kidney distal tubule cells reveals multiple mediators of chronic aldosterone action.

Poulsen SB, Limbutara K, Fenton RA, Pisitkun T, Christensen BM.

Physiol Genomics. 2018 May 1;50(5):343-354. doi: 10.1152/physiolgenomics.00084.2017. Epub 2018 Mar 9.

17.

AbDesigner3D: a structure-guided tool for peptide-based antibody production.

Saethang T, Hodge K, Kimkong I, Payne DM, Knepper MA, Pisitkun T.

Bioinformatics. 2018 Jun 15;34(12):2158-2160. doi: 10.1093/bioinformatics/bty055.

18.

CHIP Regulates Aquaporin-2 Quality Control and Body Water Homeostasis.

Wu Q, Moeller HB, Stevens DA, Sanchez-Hodge R, Childers G, Kortenoeven MLA, Cheng L, Rosenbaek LL, Rubel C, Patterson C, Pisitkun T, Schisler JC, Fenton RA.

J Am Soc Nephrol. 2018 Mar;29(3):936-948. doi: 10.1681/ASN.2017050526. Epub 2017 Dec 14.

19.

Transcriptomic profiling in human mesangial cells using patient-derived lupus autoantibodies identified miR-10a as a potential regulator of IL8.

Tangtanatakul P, Thammasate B, Jacquet A, Reantragoon R, Pisitkun T, Avihingsanon Y, Leelahavanichkul A, Hirankarn N.

Sci Rep. 2017 Nov 6;7(1):14517. doi: 10.1038/s41598-017-15160-8.

20.

Identification of UT-A1- and AQP2-interacting proteins in rat inner medullary collecting duct.

Chou CL, Hwang G, Hageman DJ, Han L, Agrawal P, Pisitkun T, Knepper MA.

Am J Physiol Cell Physiol. 2018 Jan 1;314(1):C99-C117. doi: 10.1152/ajpcell.00082.2017. Epub 2017 Oct 18.

21.

Multiple extracellular vesicle types in peritoneal dialysis effluent are prominent and contain known biomarkers.

Pearson LJ, Klaharn IY, Thongsawang B, Manuprasert W, Saejew T, Somparn P, Chuengsaman P, Kanjanabuch T, Pisitkun T.

PLoS One. 2017 Jun 8;12(6):e0178601. doi: 10.1371/journal.pone.0178601. eCollection 2017.

22.

Hypercalcemia induces targeted autophagic degradation of aquaporin-2 at the onset of nephrogenic diabetes insipidus.

Khositseth S, Charngkaew K, Boonkrai C, Somparn P, Uawithya P, Chomanee N, Payne DM, Fenton RA, Pisitkun T.

Kidney Int. 2017 May;91(5):1070-1087. doi: 10.1016/j.kint.2016.12.005. Epub 2017 Jan 27.

PMID:
28139295
23.

Regulatory landscape of AGE-RAGE-oxidative stress axis and its modulation by PPARγ activation in high fructose diet-induced metabolic syndrome.

Cannizzaro L, Rossoni G, Savi F, Altomare A, Marinello C, Saethang T, Carini M, Payne DM, Pisitkun T, Aldini G, Leelahavanichkul A.

Nutr Metab (Lond). 2017 Jan 13;14:5. doi: 10.1186/s12986-016-0149-z. eCollection 2017.

24.

From 20th century metabolic wall charts to 21st century systems biology: database of mammalian metabolic enzymes.

Corcoran CC, Grady CR, Pisitkun T, Parulekar J, Knepper MA.

Am J Physiol Renal Physiol. 2017 Mar 1;312(3):F533-F542. doi: 10.1152/ajprenal.00601.2016. Epub 2016 Dec 14.

25.

Fc Gamma Receptor IIB Deficient Mice: A Lupus Model with Increased Endotoxin Tolerance-Related Sepsis Susceptibility.

Ondee T, Surawut S, Taratummarat S, Hirankarn N, Palaga T, Pisitkun P, Pisitkun T, Leelahavanichkul A.

Shock. 2017 Jun;47(6):743-752. doi: 10.1097/SHK.0000000000000796.

PMID:
27849678
26.

Label-free immunosensor based on graphene/polyaniline nanocomposite for neutrophil gelatinase-associated lipocalin detection.

Yukird J, Wongtangprasert T, Rangkupan R, Chailapakul O, Pisitkun T, Rodthongkum N.

Biosens Bioelectron. 2017 Jan 15;87:249-255. doi: 10.1016/j.bios.2016.08.062. Epub 2016 Aug 20.

PMID:
27567250
27.

A machine learning strategy for predicting localization of post-translational modification sites in protein-protein interacting regions.

Saethang T, Payne DM, Avihingsanon Y, Pisitkun T.

BMC Bioinformatics. 2016 Aug 17;17(1):307. doi: 10.1186/s12859-016-1165-8.

28.

Plumbagin Enhances Tamoxifen Sensitivity and Inhibits Tumor Invasion in Endocrine Resistant Breast Cancer through EMT Regulation.

Sakunrangsit N, Kalpongnukul N, Pisitkun T, Ketchart W.

Phytother Res. 2016 Dec;30(12):1968-1977. doi: 10.1002/ptr.5702. Epub 2016 Aug 17.

PMID:
27530731
29.

Comprehensive database of human E3 ubiquitin ligases: application to aquaporin-2 regulation.

Medvar B, Raghuram V, Pisitkun T, Sarkar A, Knepper MA.

Physiol Genomics. 2016 Jul 1;48(7):502-12. doi: 10.1152/physiolgenomics.00031.2016. Epub 2016 May 13.

30.

Deubiquitylation of Protein Cargo Is Not an Essential Step in Exosome Formation.

Huebner AR, Cheng L, Somparn P, Knepper MA, Fenton RA, Pisitkun T.

Mol Cell Proteomics. 2016 May;15(5):1556-71. doi: 10.1074/mcp.M115.054965. Epub 2016 Feb 16.

31.

Autophagic degradation of aquaporin-2 is an early event in hypokalemia-induced nephrogenic diabetes insipidus.

Khositseth S, Uawithya P, Somparn P, Charngkaew K, Thippamom N, Hoffert JD, Saeed F, Michael Payne D, Chen SH, Fenton RA, Pisitkun T.

Sci Rep. 2015 Dec 17;5:18311. doi: 10.1038/srep18311.

32.

Development of viable TAP-tagged dengue virus for investigation of host-virus interactions in viral replication.

Poyomtip T, Hodge K, Matangkasombut P, Sakuntabhai A, Pisitkun T, Jirawatnotai S, Chimnaronk S.

J Gen Virol. 2016 Mar;97(3):646-58. doi: 10.1099/jgv.0.000371. Epub 2015 Dec 14.

PMID:
26669909
33.

Peptide Labeling Using Isobaric Tagging Reagents for Quantitative Phosphoproteomics.

Cheng L, Pisitkun T, Knepper MA, Hoffert JD.

Methods Mol Biol. 2016;1355:53-70. doi: 10.1007/978-1-4939-3049-4_4.

34.

A Systems Level Analysis of Vasopressin-mediated Signaling Networks in Kidney Distal Convoluted Tubule Cells.

Cheng L, Wu Q, Kortenoeven MLA, Pisitkun T, Fenton RA.

Sci Rep. 2015 Aug 4;5:12829. doi: 10.1038/srep12829.

35.

Elevated expressions of myeloid-related proteins-8 and -14 are danger biomarkers for lupus nephritis.

Tantivitayakul P, Benjachat T, Somparn P, Leelahavanichkul A, Kittikovit V, Hirankarn N, Pisitkun T, Avihingsanon Y.

Lupus. 2016 Jan;25(1):38-45. doi: 10.1177/0961203315598015. Epub 2015 Jul 29.

PMID:
26223295
36.

Proteomic analysis of the kidney filtration barrier--Problems and perspectives.

Rinschen MM, Benzing T, Limbutara K, Pisitkun T.

Proteomics Clin Appl. 2015 Dec;9(11-12):1053-68. doi: 10.1002/prca.201400201. Epub 2015 Aug 11. Review.

PMID:
25907645
37.

Serum miRNA-122 in acute liver injury induced by kidney injury and sepsis in CD-1 mouse models.

Leelahavanichkul A, Somparn P, Panich T, Chancharoenthana W, Wongphom J, Pisitkun T, Hirankarn N, Eiam-Ong S.

Hepatol Res. 2015 Dec;45(13):1341-52. doi: 10.1111/hepr.12501. Epub 2015 Mar 29.

PMID:
25655304
38.

Comparative phosphoproteomic analysis of mammalian glomeruli reveals conserved podocin C-terminal phosphorylation as a determinant of slit diaphragm complex architecture.

Rinschen MM, Pahmeyer C, Pisitkun T, Schnell N, Wu X, Maaß M, Bartram MP, Lamkemeyer T, Schermer B, Benzing T, Brinkkoetter PT.

Proteomics. 2015 Apr;15(7):1326-31. doi: 10.1002/pmic.201400235. Epub 2015 Jan 19.

39.

Exosomes in urine biomarker discovery.

Huebner AR, Somparn P, Benjachat T, Leelahavanichkul A, Avihingsanon Y, Fenton RA, Pisitkun T.

Adv Exp Med Biol. 2015;845:43-58. doi: 10.1007/978-94-017-9523-4_5.

PMID:
25355568
40.

Integrated Design of Antibodies for Systems Biology Using Ab Designer.

Pisitkun T, Dummer P, Somparn P, Hirankarn N, Kopp JB, Knepper MA.

J Proteomics Bioinform. 2014 Mar 24;7(4):088-94.

41.

Letter to the editor: "Systems biology versus reductionism in cell physiology".

Knepper MA, Raghuram V, Bradford D, Chou CL, Hoffert JD, Pisitkun T.

Am J Physiol Cell Physiol. 2014 Aug 1;307(3):C308-9. doi: 10.1152/ajpcell.00175.2014. No abstract available.

42.

A knowledge base of vasopressin actions in the kidney.

Sanghi A, Zaringhalam M, Corcoran CC, Saeed F, Hoffert JD, Sandoval P, Pisitkun T, Knepper MA.

Am J Physiol Renal Physiol. 2014 Sep 15;307(6):F747-55. doi: 10.1152/ajprenal.00012.2014. Epub 2014 Jul 23.

43.

Exploiting Thread-Level and Instruction-Level Parallelism to Cluster Mass Spectrometry Data using Multicore Architectures.

Saeed F, Hoffert JD, Pisitkun T, Knepper MA.

Netw Model Anal Health Inform Bioinform. 2014 Apr;3:54.

44.

Duodenal CCK cells from male mice express multiple hormones including ghrelin.

Sykaras AG, Demenis C, Cheng L, Pisitkun T, Mclaughlin JT, Fenton RA, Smith CP.

Endocrinology. 2014 Sep;155(9):3339-51. doi: 10.1210/en.2013-2165. Epub 2014 Jul 8.

PMID:
25004095
45.

Phosphorylation and ubiquitylation are opposing processes that regulate endocytosis of the water channel aquaporin-2.

Moeller HB, Aroankins TS, Slengerik-Hansen J, Pisitkun T, Fenton RA.

J Cell Sci. 2014 Jul 15;127(Pt 14):3174-83. doi: 10.1242/jcs.150680. Epub 2014 May 29.

46.

Early targets of lithium in rat kidney inner medullary collecting duct include p38 and ERK1/2.

Trepiccione F, Pisitkun T, Hoffert JD, Poulsen SB, Capasso G, Nielsen S, Knepper MA, Fenton RA, Christensen BM.

Kidney Int. 2014 Oct;86(4):757-67. doi: 10.1038/ki.2014.107. Epub 2014 Apr 30.

47.

Use of LC-MS/MS and Bayes' theorem to identify protein kinases that phosphorylate aquaporin-2 at Ser256.

Bradford D, Raghuram V, Wilson JL, Chou CL, Hoffert JD, Knepper MA, Pisitkun T.

Am J Physiol Cell Physiol. 2014 Jul 15;307(2):C123-39. doi: 10.1152/ajpcell.00377.2012. Epub 2014 Mar 5.

48.

PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data.

Saeed F, Pisitkun T, Hoffert JD, Rashidian S, Wang G, Gucek M, Knepper MA.

Proteome Sci. 2013 Nov 7;11(Suppl 1):S14. doi: 10.1186/1477-5956-11-S1-S14. Epub 2013 Nov 7.

49.

Phosphoproteomic analysis reveals regulatory mechanisms at the kidney filtration barrier.

Rinschen MM, Wu X, König T, Pisitkun T, Hagmann H, Pahmeyer C, Lamkemeyer T, Kohli P, Schnell N, Schermer B, Dryer S, Brooks BR, Beltrao P, Krueger M, Brinkkoetter PT, Benzing T.

J Am Soc Nephrol. 2014 Jul;25(7):1509-22. doi: 10.1681/ASN.2013070760. Epub 2014 Feb 7.

50.

Global analysis of the effects of the V2 receptor antagonist satavaptan on protein phosphorylation in collecting duct.

Hoffert JD, Pisitkun T, Saeed F, Wilson JL, Knepper MA.

Am J Physiol Renal Physiol. 2014 Feb 15;306(4):410-21. doi: 10.1152/ajprenal.00497.2013. Epub 2013 Nov 20.

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