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Items: 1 to 50 of 151

1.

Of giraffes' necks and the inheritance of chromatin states.

Pirrotta V.

Nat Genet. 2017 May 26;49(6):821-823. doi: 10.1038/ng.3881.

PMID:
28546575
2.

Corrigendum to "Regulation of Polycomb group genes Psc and Su(z)2 in Drosophila melanogaster" [Mech. Dev. 128 (2012) 536-547].

Park SY, Schwartz YB, Kahn TG, Asker D, Pirrotta V.

Mech Dev. 2018 Feb;149:53. doi: 10.1016/j.mod.2017.01.002. Epub 2017 Jan 18. No abstract available.

PMID:
28108070
3.

Interdependence of PRC1 and PRC2 for recruitment to Polycomb Response Elements.

Kahn TG, Dorafshan E, Schultheis D, Zare A, Stenberg P, Reim I, Pirrotta V, Schwartz YB.

Nucleic Acids Res. 2016 Dec 1;44(21):10132-10149. Epub 2016 Aug 23.

4.

The Necessity of Chromatin: A View in Perspective.

Pirrotta V.

Cold Spring Harb Perspect Biol. 2016 Jan 4;8(1):a019547. doi: 10.1101/cshperspect.a019547. Review.

5.

Histone Marks Direct Chromosome Segregation.

Pirrotta V.

Cell. 2015 Nov 5;163(4):792-3. doi: 10.1016/j.cell.2015.10.043.

6.

Genome-wide activities of Polycomb complexes control pervasive transcription.

Lee HG, Kahn TG, Simcox A, Schwartz YB, Pirrotta V.

Genome Res. 2015 Aug;25(8):1170-81. doi: 10.1101/gr.188920.114. Epub 2015 May 18.

7.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

8.

Ruled by ubiquitylation: a new order for polycomb recruitment.

Schwartz YB, Pirrotta V.

Cell Rep. 2014 Jul 24;8(2):321-5. doi: 10.1016/j.celrep.2014.07.001. Review.

9.

Combinatorial interactions are required for the efficient recruitment of pho repressive complex (PhoRC) to polycomb response elements.

Kahn TG, Stenberg P, Pirrotta V, Schwartz YB.

PLoS Genet. 2014 Jul 10;10(7):e1004495. doi: 10.1371/journal.pgen.1004495. eCollection 2014 Jul.

10.

Binding the boundaries of chromatin domains.

Pirrotta V.

Genome Biol. 2014 Jun 30;15(6):121. doi: 10.1186/gb4183.

11.

A new world of Polycombs: unexpected partnerships and emerging functions.

Schwartz YB, Pirrotta V.

Nat Rev Genet. 2013 Dec;14(12):853-64. doi: 10.1038/nrg3603. Epub 2013 Nov 12. Review.

PMID:
24217316
12.

Insulators target active genes to transcription factories and polycomb-repressed genes to polycomb bodies.

Li HB, Ohno K, Gui H, Pirrotta V.

PLoS Genet. 2013 Apr;9(4):e1003436. doi: 10.1371/journal.pgen.1003436. Epub 2013 Apr 18.

13.

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain.

Riddle NC, Jung YL, Gu T, Alekseyenko AA, Asker D, Gui H, Kharchenko PV, Minoda A, Plachetka A, Schwartz YB, Tolstorukov MY, Kuroda MI, Pirrotta V, Karpen GH, Park PJ, Elgin SC.

PLoS Genet. 2012 Sep;8(9):e1002954. doi: 10.1371/journal.pgen.1002954. Epub 2012 Sep 20.

14.

Molecular biology. How to read the chromatin past.

Pirrotta V.

Science. 2012 Aug 24;337(6097):919-20. doi: 10.1126/science.1227684. No abstract available.

PMID:
22923567
15.

Nature and function of insulator protein binding sites in the Drosophila genome.

Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, Kuroda MI, Park PJ, Savitsky M, Karpen GH, Pirrotta V.

Genome Res. 2012 Nov;22(11):2188-98. doi: 10.1101/gr.138156.112. Epub 2012 Jul 5. Erratum in: Genome Res. 2013 Feb;23(2):409.

16.

Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context.

Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, Karpen GH, Pirrotta V, Kuroda MI, Park PJ.

PLoS Genet. 2012;8(4):e1002646. doi: 10.1371/journal.pgen.1002646. Epub 2012 Apr 26. Erratum in: PLoS Genet. 2014 Jan;10(1). doi: 10.1371/annotation/39c76721-c8e1-4d42-ae6b-33063ce207d2.

17.

Regulation of Polycomb group genes Psc and Su(z)2 in Drosophila melanogaster.

Park SY, Schwartz YB, Kahn TG, Asker D, Pirrotta V.

Mech Dev. 2012 Jan-Feb;128(11-12):536-47. doi: 10.1016/j.mod.2012.01.004. Epub 2012 Jan 24. Erratum in: Mech Dev. 2018 Feb;149:53.

18.

A view of nuclear Polycomb bodies.

Pirrotta V, Li HB.

Curr Opin Genet Dev. 2012 Apr;22(2):101-9. doi: 10.1016/j.gde.2011.11.004. Epub 2011 Dec 16. Review.

19.
20.

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.

Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22.

21.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

22.

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin.

Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, Tolstorukov MY, Gorchakov AA, Jaffe JD, Kennedy C, Linder-Basso D, Peach SE, Shanower G, Zheng H, Kuroda MI, Pirrotta V, Park PJ, Elgin SC, Karpen GH.

Genome Res. 2011 Feb;21(2):147-63. doi: 10.1101/gr.110098.110. Epub 2010 Dec 22.

23.

Insulators, not Polycomb response elements, are required for long-range interactions between Polycomb targets in Drosophila melanogaster.

Li HB, Müller M, Bahechar IA, Kyrchanova O, Ohno K, Georgiev P, Pirrotta V.

Mol Cell Biol. 2011 Feb;31(4):616-25. doi: 10.1128/MCB.00849-10. Epub 2010 Dec 6.

24.

An assessment of histone-modification antibody quality.

Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, Luu Y, Ngo Q, Perry M, Rechtsteiner A, Riddle NC, Schwartz YB, Shanower GA, Vielle A, Ahringer J, Elgin SC, Kuroda MI, Pirrotta V, Ren B, Strome S, Park PJ, Karpen GH, Hawkins RD, Lieb JD.

Nat Struct Mol Biol. 2011 Jan;18(1):91-3. doi: 10.1038/nsmb.1972. Epub 2010 Dec 5.

25.

It's not just sex.

Pirrotta V.

Dev Cell. 2010 Sep 14;19(3):359-60. doi: 10.1016/j.devcel.2010.08.016.

26.

Alternative epigenetic chromatin states of polycomb target genes.

Schwartz YB, Kahn TG, Stenberg P, Ohno K, Bourgon R, Pirrotta V.

PLoS Genet. 2010 Jan;6(1):e1000805. doi: 10.1371/journal.pgen.1000805. Epub 2010 Jan 8.

27.

Role of the polycomb protein EED in the propagation of repressive histone marks.

Margueron R, Justin N, Ohno K, Sharpe ML, Son J, Drury WJ 3rd, Voigt P, Martin SR, Taylor WR, De Marco V, Pirrotta V, Reinberg D, Gamblin SJ.

Nature. 2009 Oct 8;461(7265):762-7. doi: 10.1038/nature08398. Epub 2009 Sep 20.

28.

A little bit of sugar makes polycomb better.

Schwartz YB, Pirrotta V.

J Mol Cell Biol. 2009 Oct;1(1):11-2. doi: 10.1093/jmcb/mjp008. Epub 2009 Aug 11.

PMID:
19671629
29.

Regulation of the Drosophila Enhancer of split and invected-engrailed gene complexes by sister chromatid cohesion proteins.

Schaaf CA, Misulovin Z, Sahota G, Siddiqui AM, Schwartz YB, Kahn TG, Pirrotta V, Gause M, Dorsett D.

PLoS One. 2009 Jul 9;4(7):e6202. doi: 10.1371/journal.pone.0006202.

30.

Polycomb repression under the skin.

Pirrotta V.

Cell. 2009 Mar 20;136(6):992-4. doi: 10.1016/j.cell.2009.03.004.

31.

Polycomb complexes and epigenetic states.

Schwartz YB, Pirrotta V.

Curr Opin Cell Biol. 2008 Jun;20(3):266-73. doi: 10.1016/j.ceb.2008.03.002. Epub 2008 Apr 23. Review.

PMID:
18439810
32.

Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo.

Sarma K, Margueron R, Ivanov A, Pirrotta V, Reinberg D.

Mol Cell Biol. 2008 Apr;28(8):2718-31. doi: 10.1128/MCB.02017-07. Epub 2008 Feb 19.

33.

ESC, ESCL and their roles in Polycomb Group mechanisms.

Ohno K, McCabe D, Czermin B, Imhof A, Pirrotta V.

Mech Dev. 2008 May-Jun;125(5-6):527-41. doi: 10.1016/j.mod.2008.01.002. Epub 2008 Jan 12.

34.

Enhancer blocking and transvection at the Drosophila apterous locus.

Gohl D, Müller M, Pirrotta V, Affolter M, Schedl P.

Genetics. 2008 Jan;178(1):127-43. doi: 10.1534/genetics.107.077768.

35.

Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.

Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M, MacArthur S, Fay JC, Eisen MB, Pirrotta V, Biggin MD, Dorsett D.

Chromosoma. 2008 Feb;117(1):89-102. Epub 2007 Oct 27.

36.

CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo.

Konev AY, Tribus M, Park SY, Podhraski V, Lim CY, Emelyanov AV, Vershilova E, Pirrotta V, Kadonaga JT, Lusser A, Fyodorov DV.

Science. 2007 Aug 24;317(5841):1087-90.

37.

Polycomb silencing mechanisms and the management of genomic programmes.

Schwartz YB, Pirrotta V.

Nat Rev Genet. 2007 Jan;8(1):9-22. Review.

PMID:
17173055
38.

Integrity of the Mod(mdg4)-67.2 BTB domain is critical to insulator function in Drosophila melanogaster.

Golovnin A, Mazur A, Kopantseva M, Kurshakova M, Gulak PV, Gilmore B, Whitfield WG, Geyer P, Pirrotta V, Georgiev P.

Mol Cell Biol. 2007 Feb;27(3):963-74. Epub 2006 Nov 13.

39.

Differentiation and gene regulation. Genomic programs and differentiation: editorial overview.

Pirrotta V, van Lohuizen M.

Curr Opin Genet Dev. 2006 Oct;16(5):443-6. Epub 2006 Aug 22. No abstract available.

PMID:
16930988
40.

Polycomb complexes and the propagation of the methylation mark at the Drosophila ubx gene.

Kahn TG, Schwartz YB, Dellino GI, Pirrotta V.

J Biol Chem. 2006 Sep 29;281(39):29064-75. Epub 2006 Aug 2.

41.

Genome-wide analysis of Polycomb targets in Drosophila melanogaster.

Schwartz YB, Kahn TG, Nix DA, Li XY, Bourgon R, Biggin M, Pirrotta V.

Nat Genet. 2006 Jun;38(6):700-5. Epub 2006 May 28.

PMID:
16732288
42.

Polycomb silencing mechanisms and genomic programming.

Pirrotta V.

Ernst Schering Res Found Workshop. 2006;(57):97-113. Review.

PMID:
16568951
43.

The Mcp element mediates stable long-range chromosome-chromosome interactions in Drosophila.

Vazquez J, Müller M, Pirrotta V, Sedat JW.

Mol Biol Cell. 2006 May;17(5):2158-65. Epub 2006 Feb 22.

44.

Functional dissection of the Suppressor of UnderReplication protein of Drosophila melanogaster: identification of domains influencing chromosome binding and DNA replication.

Kolesnikova TD, Makunin IV, Volkova EI, Pirrotta V, Belyaeva ES, Zhimulev IF.

Genetica. 2005 Jul;124(2-3):187-200.

PMID:
16134332
45.

Polycomb silencing mechanisms in Drosophila.

Schwartz YB, Kahn TG, Dellino GI, Pirrotta V.

Cold Spring Harb Symp Quant Biol. 2004;69:301-8. No abstract available.

PMID:
16117662
46.
47.

The ways of PARP.

Pirrotta V.

Cell. 2004 Dec 17;119(6):735-6.

48.
49.

Polycomb silencing blocks transcription initiation.

Dellino GI, Schwartz YB, Farkas G, McCabe D, Elgin SC, Pirrotta V.

Mol Cell. 2004 Mar 26;13(6):887-93.

50.

The ThioredoxinT and deadhead gene pair encode testis- and ovary-specific thioredoxins in Drosophila melanogaster.

Svensson MJ, Chen JD, Pirrotta V, Larsson J.

Chromosoma. 2003 Oct;112(3):133-43. Epub 2003 Sep 17.

PMID:
14579129

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